Wall clock time and date at job start Tue Mar 31 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00061 * 2 1 4 4 C 1.34776 * 119.99740 * 180.02562 * 2 1 3 5 5 O 1.21275 * 120.00127 * 359.97438 * 4 2 1 6 6 C 1.50704 * 119.99829 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.72497 * 56.90079 * 6 4 2 8 8 C 1.54939 * 110.66802 * 293.80622 * 6 4 2 9 9 C 1.54593 * 102.92332 * 204.15074 * 8 6 4 10 10 C 1.53994 * 105.13909 * 21.95695 * 9 8 6 11 11 N 1.47900 * 107.05742 * 1.22332 * 10 9 8 12 12 C 1.46906 * 111.00325 * 214.15432 * 11 10 9 13 13 C 1.52997 * 109.46544 * 65.15841 * 12 11 10 14 14 C 1.53007 * 109.46948 * 185.63413 * 13 12 11 15 15 N 1.46898 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.46900 * 110.99869 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46826 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00476 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99687 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00161 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47113 * 89.99634 * 21 19 17 23 23 H 1.48495 * 109.47404 * 210.00113 * 21 19 17 24 24 H 1.48502 * 109.47065 * 330.00044 * 21 19 17 25 25 H 1.08992 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46907 * 299.99434 * 1 2 3 27 27 H 1.08998 * 109.47275 * 59.99421 * 1 2 3 28 28 H 1.08992 * 109.47583 * 270.00491 * 3 2 1 29 29 H 1.09001 * 109.46446 * 30.00627 * 3 2 1 30 30 H 1.09002 * 109.46599 * 149.99697 * 3 2 1 31 31 H 1.09003 * 110.72508 * 85.78780 * 8 6 4 32 32 H 1.09004 * 110.87653 * 322.57818 * 8 6 4 33 33 H 1.09002 * 110.31005 * 263.04068 * 9 8 6 34 34 H 1.09001 * 110.39561 * 140.91413 * 9 8 6 35 35 H 1.09000 * 109.91791 * 241.87501 * 10 9 8 36 36 H 1.09000 * 109.91837 * 120.57557 * 10 9 8 37 37 H 1.08996 * 109.47121 * 185.15938 * 12 11 10 38 38 H 1.09000 * 109.46511 * 305.16195 * 12 11 10 39 39 H 1.09000 * 109.47317 * 305.62727 * 13 12 11 40 40 H 1.08993 * 109.47670 * 65.63470 * 13 12 11 41 41 H 1.09000 * 109.46551 * 299.99783 * 14 13 12 42 42 H 1.09002 * 109.47008 * 59.99354 * 14 13 12 43 43 H 1.00898 * 111.00016 * 56.04500 * 15 14 13 44 44 H 1.08996 * 109.47055 * 299.99985 * 16 15 14 45 45 H 1.08999 * 109.47245 * 60.00105 * 16 15 14 46 46 H 0.97001 * 119.99553 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 1 4.0319 -0.6107 0.8529 8 6 4.1922 -0.5818 -1.3275 9 6 5.6006 -1.2111 -1.4290 10 6 5.5435 -2.4697 -0.5434 11 7 4.1701 -2.5569 -0.0016 12 6 4.1743 -3.1185 1.3559 13 6 4.8992 -2.1593 2.3022 14 6 5.0273 -2.8053 3.6833 15 7 5.7227 -1.8841 4.5921 16 6 5.8636 -2.4719 5.9309 17 6 6.5805 -1.5006 6.8330 18 1 6.8999 -0.5427 6.4499 19 6 6.8296 -1.8354 8.1472 20 7 6.4411 -3.0022 8.6135 21 14 7.7188 -0.6318 9.2652 22 1 6.7267 0.2459 9.9364 23 1 8.4880 -1.3831 10.2893 24 1 8.6486 0.1988 8.4585 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.3791 1.5835 -1.0276 29 1 1.6084 2.0283 0.5140 30 1 3.1499 1.1383 0.5139 31 1 4.2583 0.5048 -1.2713 32 1 3.5722 -0.8859 -2.1709 33 1 6.3529 -0.5177 -1.0530 34 1 5.8211 -1.4844 -2.4609 35 1 6.2600 -2.3818 0.2733 36 1 5.7639 -3.3544 -1.1408 37 1 3.1478 -3.2569 1.6950 38 1 4.6878 -4.0800 1.3496 39 1 5.8924 -1.9425 1.9090 40 1 4.3312 -1.2329 2.3857 41 1 4.0341 -3.0221 4.0764 42 1 5.5953 -3.7318 3.5998 43 1 5.2497 -0.9940 4.6362 44 1 4.8761 -2.6866 6.3392 45 1 6.4376 -3.3961 5.8635 46 1 6.6160 -3.2375 9.5381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521996648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:09 Heat of formation + Delta-G solvation = -23.633793 kcal Electronic energy + Delta-G solvation = -22982.628437 eV Core-core repulsion = 19714.343572 eV Total energy + Delta-G solvation = -3268.284864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63774 -38.47483 -35.84207 -35.65846 -33.46876 -32.19506 -30.29664 -29.54699 -27.91984 -26.49316 -26.17300 -24.08806 -22.42230 -21.44801 -21.20117 -20.77464 -18.89084 -17.48195 -16.51650 -16.32638 -16.03226 -15.77168 -15.35468 -14.79939 -14.62290 -14.24548 -13.94659 -13.66042 -13.43647 -13.18142 -13.00870 -12.85594 -12.68896 -12.35412 -12.26915 -12.13488 -11.95346 -11.69787 -11.57062 -11.41036 -11.17246 -10.96603 -10.92451 -10.72310 -10.58811 -10.22949 -9.94328 -9.78837 -9.19596 -8.90715 -8.49126 -8.34978 -7.31072 -6.03761 -4.06086 2.52412 2.72017 3.30652 3.36645 3.41052 3.88774 4.25997 4.35813 4.42223 4.64685 4.69033 4.81833 4.93028 5.00526 5.01518 5.12953 5.17979 5.23283 5.30312 5.31919 5.35901 5.48465 5.52843 5.53885 5.60456 5.67562 5.70140 5.73803 5.89097 5.96652 6.03408 6.18766 6.20699 6.40887 6.50669 6.72943 6.94880 7.14898 7.25282 7.41711 7.77259 8.08798 8.12193 8.37977 8.60218 9.03045 9.58757 11.07396 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.003226 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.085919 B = 8678.247354 C = 9122.439397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.077 3.923 4 C 0.526 3.474 5 O -0.518 6.518 6 C 0.037 3.963 7 H 0.091 0.909 8 C -0.112 4.112 9 C -0.129 4.129 10 C 0.027 3.973 11 N -0.491 5.491 12 C 0.045 3.955 13 C -0.153 4.153 14 C 0.064 3.936 15 N -0.691 5.691 16 C 0.193 3.807 17 C -0.515 4.515 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.900 3.100 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.064 0.936 43 H 0.325 0.675 44 H -0.014 1.014 45 H 0.028 0.972 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.602 8.217 -22.157 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.362 5.362 3 C -0.066 4.066 4 C 0.313 3.687 5 O -0.392 6.392 6 C -0.075 4.075 7 H 0.108 0.892 8 C -0.150 4.150 9 C -0.167 4.167 10 C -0.100 4.100 11 N -0.214 5.214 12 C -0.083 4.083 13 C -0.193 4.193 14 C -0.067 4.067 15 N -0.321 5.321 16 C 0.066 3.934 17 C -0.554 4.554 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.004 0.996 45 H 0.046 0.954 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.623 6.947 -22.511 24.761 hybrid contribution 0.027 1.252 1.691 2.104 sum -7.596 8.198 -20.820 23.630 Atomic orbital electron populations 1.21651 0.79250 1.04221 1.01055 1.47698 1.07048 1.06387 1.75116 1.21881 0.97494 0.85412 1.01860 1.20396 0.89560 0.83151 0.75612 1.90681 1.69747 1.30841 1.47920 1.22836 0.92064 0.92661 0.99926 0.89184 1.22495 0.96671 0.99931 0.95943 1.22387 0.96619 0.96934 1.00768 1.22979 0.90117 0.98573 0.98358 1.64700 1.18381 1.16518 1.21791 1.22350 1.01745 0.98104 0.86117 1.22270 1.00991 0.99222 0.96769 1.21776 0.96350 0.96877 0.91713 1.60701 1.52975 1.05237 1.13164 1.19556 0.95239 0.95777 0.82805 1.21187 1.37037 1.02470 0.94660 0.92013 1.25008 0.96024 0.95483 0.98132 1.69971 1.47145 1.20924 1.15657 0.86473 0.79689 0.80852 0.80247 1.20723 1.21197 1.19768 0.89532 0.92275 0.92446 0.92398 0.90917 0.90794 0.90299 0.90562 0.90974 0.90737 0.92207 0.90038 0.90057 0.90141 0.90916 0.92593 0.96392 0.91703 0.85862 0.99635 0.95419 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.69 59.85 0.64 1.33 16 2 N -0.63 -6.15 3.27 -189.52 -0.62 -6.78 16 3 C 0.08 0.49 9.06 59.85 0.54 1.03 16 4 C 0.53 6.76 6.98 -10.98 -0.08 6.69 16 5 O -0.52 -8.69 15.15 5.56 0.08 -8.61 16 6 C 0.04 0.41 1.51 -66.94 -0.10 0.31 16 7 H 0.09 0.99 4.64 -51.93 -0.24 0.74 16 8 C -0.11 -0.94 5.77 -24.87 -0.14 -1.08 16 9 C -0.13 -1.05 6.93 -25.38 -0.18 -1.23 16 10 C 0.03 0.29 6.46 -2.75 -0.02 0.27 16 11 N -0.49 -6.25 4.82 -223.99 -1.08 -7.33 16 12 C 0.05 0.63 5.22 -3.82 -0.02 0.61 16 13 C -0.15 -2.21 4.62 -26.73 -0.12 -2.34 16 14 C 0.06 1.16 5.69 -3.82 -0.02 1.14 16 15 N -0.69 -15.13 6.49 -115.06 -0.75 -15.88 16 16 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 17 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 18 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.05 1.59 5.46 -17.81 -0.10 1.49 16 20 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.09 0.91 6.90 -51.93 -0.36 0.55 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 29 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.07 0.46 6.05 -51.93 -0.31 0.14 16 31 H 0.08 0.48 6.59 -51.93 -0.34 0.14 16 32 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 5.79 -51.93 -0.30 0.35 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.27 7.55 -51.93 -0.39 0.87 16 38 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 39 H 0.07 1.04 6.11 -51.93 -0.32 0.72 16 40 H 0.06 0.79 6.27 -51.93 -0.33 0.46 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.33 6.78 8.72 -39.29 -0.34 6.43 16 44 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -33.90 356.99 -9.15 -43.06 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.94 Total: 1.61 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 0.06 Total: -1.76 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -1.71 Total: -56.45 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.90 -9.15 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521996648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.421 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds