Wall clock time and date at job start Tue Mar 31 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 N 1.46903 * 109.47004 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00066 * 66.05030 * 4 3 2 6 6 C 1.46903 * 110.99895 * 189.99797 * 4 3 2 7 7 C 1.50702 * 109.47085 * 170.00084 * 6 4 3 8 8 O 1.21283 * 119.99909 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99711 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.53081 * 109.43848 * 84.79387 * 10 9 7 12 12 C 1.53190 * 109.29209 * 181.23616 * 11 10 9 13 13 N 1.46921 * 108.89311 * 305.57883 * 12 11 10 14 14 C 1.36940 * 120.63187 * 233.51481 * 13 12 11 15 15 H 1.08001 * 120.00319 * 152.61971 * 14 13 12 16 16 C 1.38813 * 119.99903 * 332.62203 * 14 13 12 17 17 N 1.31624 * 120.00070 * 159.34992 * 16 14 13 18 18 Si 1.86800 * 120.00077 * 339.35529 * 16 14 13 19 19 H 1.48494 * 109.47321 * 92.87851 * 18 16 14 20 20 H 1.48501 * 109.47194 * 212.88430 * 18 16 14 21 21 H 1.48509 * 109.46983 * 332.87654 * 18 16 14 22 22 C 1.46923 * 118.74178 * 53.54201 * 13 12 11 23 23 C 1.53035 * 109.45960 * 204.99782 * 10 9 7 24 24 H 1.09003 * 109.46901 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47400 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.47029 * 60.00152 * 1 2 3 27 27 H 1.08994 * 109.47400 * 239.99829 * 2 1 3 28 28 H 1.09000 * 109.47029 * 119.99848 * 2 1 3 29 29 H 1.09003 * 109.46967 * 59.99840 * 3 2 1 30 30 H 1.09000 * 109.47075 * 299.99820 * 3 2 1 31 31 H 1.08999 * 109.47090 * 183.95510 * 5 4 3 32 32 H 1.09004 * 109.46698 * 303.94744 * 5 4 3 33 33 H 1.08992 * 109.47580 * 63.94775 * 5 4 3 34 34 H 1.09006 * 109.47081 * 50.00430 * 6 4 3 35 35 H 1.09000 * 109.47011 * 290.00270 * 6 4 3 36 36 H 0.96998 * 120.00063 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.46073 * 324.97324 * 10 9 7 38 38 H 1.08992 * 109.38800 * 61.36034 * 11 10 9 39 39 H 1.09002 * 109.61927 * 301.25313 * 11 10 9 40 40 H 1.08999 * 109.58729 * 185.71870 * 12 11 10 41 41 H 1.09004 * 109.58886 * 65.43758 * 12 11 10 42 42 H 0.97001 * 119.99914 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.59094 * 66.17180 * 22 13 12 44 44 H 1.09001 * 109.59077 * 186.46452 * 22 13 12 45 45 H 1.09002 * 109.49848 * 58.67960 * 23 10 9 46 46 H 1.09002 * 109.52425 * 298.59433 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8856 -1.2524 6 6 4.0354 2.7932 0.2387 7 6 5.5216 2.7184 0.4767 8 8 6.0866 1.6455 0.4510 9 7 6.2226 3.8437 0.7191 10 6 7.6674 3.7709 0.9510 11 6 8.3999 3.7734 -0.3932 12 6 9.9082 3.6661 -0.1478 13 7 10.3187 4.7390 0.7681 14 6 11.3366 5.5914 0.4327 15 1 11.3587 6.5922 0.8382 16 6 12.3400 5.1692 -0.4286 17 7 13.0722 6.0549 -1.0703 18 14 12.6510 3.3441 -0.6770 19 1 11.8718 2.8639 -1.8464 20 1 14.0984 3.1171 -0.9195 21 1 12.2301 2.6004 0.5375 22 6 9.6167 4.8797 2.0512 23 6 8.1118 4.9769 1.7817 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1233 0.8323 -1.1974 32 1 3.6304 -0.1147 -1.4043 33 1 3.7453 1.5258 -2.0852 34 1 3.5485 3.2238 1.1138 35 1 3.8377 3.4188 -0.6317 36 1 5.7706 4.7017 0.7401 37 1 7.9030 2.8527 1.4890 38 1 8.1823 4.7012 -0.9220 39 1 8.0675 2.9258 -0.9926 40 1 10.4404 3.7693 -1.0934 41 1 10.1381 2.6979 0.2971 42 1 13.7731 5.7599 -1.6725 43 1 9.8205 4.0104 2.6765 44 1 9.9584 5.7823 2.5577 45 1 7.5724 4.9850 2.7289 46 1 7.8989 5.8950 1.2340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:22 Heat of formation + Delta-G solvation = -36.299129 kcal Electronic energy + Delta-G solvation = -22977.971514 eV Core-core repulsion = 19709.137440 eV Total energy + Delta-G solvation = -3268.834074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09879 -39.41840 -38.15112 -36.01089 -34.14910 -33.98978 -32.00853 -31.94212 -29.21568 -27.91276 -26.68950 -24.52862 -24.35066 -23.27277 -21.64947 -21.44815 -20.94622 -18.90347 -17.99129 -17.65526 -16.86206 -16.81220 -16.32823 -15.98475 -15.81271 -15.48229 -15.35887 -15.08465 -14.81120 -14.53637 -14.25308 -14.08553 -13.89314 -13.64488 -13.44288 -13.01609 -12.79438 -12.68542 -12.65070 -12.56518 -12.37569 -12.22799 -12.04980 -11.93826 -11.76048 -11.48640 -11.44913 -11.44166 -10.83173 -10.64309 -9.98315 -9.28472 -8.97864 -8.18850 -5.49862 1.27133 1.38049 1.46512 1.71422 2.09965 2.38772 3.02687 3.03457 3.32456 3.75328 3.86388 3.97041 3.98309 4.14623 4.23573 4.29530 4.30966 4.35086 4.45770 4.49254 4.53887 4.57232 4.67274 4.69883 4.70286 4.84009 4.86948 4.89121 4.94315 5.02005 5.08078 5.10864 5.15465 5.24464 5.30762 5.42558 5.44463 5.57854 5.85584 5.94377 6.11453 6.11661 6.68911 6.89070 7.38135 7.59892 8.01397 9.00718 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.035598 B = 0.003197 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.372257 B = 8754.914274 C = 9194.874978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.547 5.547 5 C 0.021 3.979 6 C 0.042 3.958 7 C 0.507 3.493 8 O -0.569 6.569 9 N -0.713 5.713 10 C 0.162 3.838 11 C -0.128 4.128 12 C 0.125 3.875 13 N -0.619 5.619 14 C -0.243 4.243 15 H 0.062 0.938 16 C -0.032 4.032 17 N -0.953 5.953 18 Si 0.938 3.062 19 H -0.281 1.281 20 H -0.309 1.309 21 H -0.266 1.266 22 C 0.142 3.858 23 C -0.124 4.124 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.260 -6.837 3.395 28.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.070 4.070 4 N -0.271 5.271 5 C -0.127 4.127 6 C -0.089 4.089 7 C 0.294 3.706 8 O -0.447 6.447 9 N -0.366 5.366 10 C 0.056 3.944 11 C -0.168 4.168 12 C 0.000 4.000 13 N -0.344 5.344 14 C -0.373 4.373 15 H 0.080 0.920 16 C -0.227 4.227 17 N -0.600 5.600 18 Si 0.768 3.232 19 H -0.208 1.208 20 H -0.238 1.238 21 H -0.191 1.191 22 C 0.017 3.983 23 C -0.163 4.163 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.252 0.748 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.594 -7.869 3.694 27.978 hybrid contribution 0.661 0.077 -1.181 1.355 sum -25.932 -7.792 2.513 27.194 Atomic orbital electron populations 1.21701 0.94207 1.02218 1.02291 1.21526 0.96400 0.95998 1.02028 1.22262 0.84977 0.97975 1.01784 1.61621 1.08662 1.20695 1.36141 1.22482 1.01137 1.00118 0.88971 1.22038 0.90628 0.91577 1.04668 1.21175 0.90395 0.83530 0.75511 1.90672 1.72530 1.30085 1.51442 1.46005 1.08022 1.10150 1.72401 1.20625 0.79526 0.99329 0.94872 1.22207 0.95181 1.01314 0.98126 1.21262 0.94626 0.90612 0.93549 1.44540 1.38245 1.35135 1.16503 1.18910 1.00010 0.93402 1.24965 0.92039 1.25827 0.97195 1.00464 0.99223 1.69944 1.25025 1.34721 1.30286 0.86053 0.75316 0.83460 0.78410 1.20824 1.23753 1.19075 1.21117 0.91008 1.00050 0.86115 1.22135 0.96636 0.96996 1.00538 0.92264 0.92010 0.92328 0.92488 0.92299 0.89416 0.93903 0.92324 0.90757 0.95205 0.85163 0.89921 0.74827 0.91758 0.91724 0.92648 0.93287 0.95866 0.92971 0.95043 0.91226 0.88481 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.65 5.86 30.59 0.18 -1.47 16 3 C 0.06 0.77 4.96 86.30 0.43 1.20 16 4 N -0.55 -10.73 4.50 -927.02 -4.17 -14.90 16 5 C 0.02 0.45 9.01 127.69 1.15 1.60 16 6 C 0.04 0.69 5.45 85.56 0.47 1.15 16 7 C 0.51 12.64 7.52 87.66 0.66 13.30 16 8 O -0.57 -19.81 13.97 -3.04 -0.04 -19.85 16 9 N -0.71 -15.86 5.08 -442.34 -2.25 -18.11 16 10 C 0.16 4.81 2.41 45.03 0.11 4.92 16 11 C -0.13 -4.61 5.66 30.68 0.17 -4.43 16 12 C 0.13 5.58 4.20 86.36 0.36 5.94 16 13 N -0.62 -29.05 2.77 -699.09 -1.94 -30.99 16 14 C -0.24 -13.70 10.03 84.03 0.84 -12.86 16 15 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 16 C -0.03 -1.90 5.23 84.86 0.44 -1.46 16 17 N -0.95 -60.15 13.97 21.65 0.30 -59.85 16 18 Si 0.94 48.18 24.34 68.60 1.67 49.85 16 19 H -0.28 -13.93 6.62 99.48 0.66 -13.28 16 20 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16 21 H -0.27 -13.32 6.64 99.48 0.66 -12.66 16 22 C 0.14 5.20 6.52 86.37 0.56 5.76 16 23 C -0.12 -3.40 5.55 30.67 0.17 -3.23 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.83 6.47 -2.39 -0.02 0.82 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.95 7.93 -2.39 -0.02 0.93 16 30 H 0.04 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 32 H 0.07 1.45 6.30 -2.38 -0.02 1.44 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.13 1.41 7.93 -2.38 -0.02 1.39 16 35 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.41 6.19 8.60 -92.71 -0.80 5.39 16 37 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 2.42 4.50 -2.39 -0.01 2.41 16 41 H 0.02 1.06 7.07 -2.38 -0.02 1.04 16 42 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 45 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.99 351.54 -0.11 -73.10 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.05 Total: 11.02 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.26 Total: 9.72 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -8.05 Total: -123.84 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.85 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.67 Total: 49.85 kcal Total: -72.99 -0.11 -73.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.802 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds