Wall clock time and date at job start Tue Mar 31 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46636 * 2 1 4 4 C 1.53001 * 109.47536 * 119.99829 * 2 1 3 5 5 N 1.46898 * 109.47108 * 175.00471 * 4 2 1 6 6 C 1.46904 * 111.00007 * 180.02562 * 5 4 2 7 7 C 1.50695 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00149 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99890 * 180.02562 * 7 6 5 10 10 C 1.47087 * 120.88164 * 179.97438 * 9 7 6 11 11 C 1.53233 * 108.51817 * 231.20398 * 10 9 7 12 12 N 1.46905 * 109.34461 * 306.16600 * 11 10 9 13 13 C 1.46895 * 110.99974 * 187.25362 * 12 11 10 14 14 C 1.50702 * 109.46770 * 170.00187 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46900 * 111.26196 * 63.11001 * 12 11 10 23 23 C 1.47077 * 120.88346 * 0.02562 * 9 7 6 24 24 H 1.08999 * 109.47383 * 299.99706 * 1 2 3 25 25 H 1.08996 * 109.47479 * 59.99797 * 1 2 3 26 26 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47329 * 240.00813 * 2 1 3 28 28 H 1.09001 * 109.47330 * 60.00471 * 3 2 1 29 29 H 1.09001 * 109.46976 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47352 * 300.00281 * 3 2 1 31 31 H 1.08998 * 109.46362 * 55.00172 * 4 2 1 32 32 H 1.09001 * 109.46954 * 295.00477 * 4 2 1 33 33 H 1.00895 * 111.00696 * 56.04657 * 5 4 2 34 34 H 1.09000 * 109.46734 * 59.99421 * 6 5 4 35 35 H 1.09001 * 109.46638 * 299.99898 * 6 5 4 36 36 H 1.08999 * 109.62348 * 111.49529 * 10 9 7 37 37 H 1.08990 * 109.78576 * 351.00887 * 10 9 7 38 38 H 1.09003 * 109.49046 * 186.21182 * 11 10 9 39 39 H 1.08999 * 109.49709 * 66.12959 * 11 10 9 40 40 H 1.09004 * 109.47258 * 50.00511 * 13 12 11 41 41 H 1.08994 * 109.47601 * 290.00103 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.49699 * 56.85399 * 22 12 11 44 44 H 1.09003 * 109.48977 * 176.93746 * 22 12 11 45 45 H 1.09005 * 109.63045 * 248.50602 * 23 9 7 46 46 H 1.08998 * 109.62824 * 9.08326 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5041 -0.8265 1.1904 6 6 4.0304 -1.5157 2.3761 7 6 5.5317 -1.6051 2.2801 8 8 6.1065 -1.1408 1.3183 9 7 6.2354 -2.2018 3.2624 10 6 7.7011 -2.3004 3.1883 11 6 8.1035 -3.7593 3.4284 12 7 7.5126 -4.2258 4.6899 13 6 8.0126 -5.5611 5.0433 14 6 7.5839 -5.9026 6.4471 15 1 6.9983 -5.1983 7.0194 16 6 7.9341 -7.1168 6.9988 17 7 8.6468 -7.9746 6.3018 18 14 7.3962 -7.5431 8.7360 19 1 6.0774 -8.2243 8.6928 20 1 8.3990 -8.4452 9.3573 21 1 7.2846 -6.2991 9.5392 22 6 6.0450 -4.2126 4.6277 23 6 5.5581 -2.7728 4.4365 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4427 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6054 -1.7197 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9280 0.0827 1.0823 34 1 3.6096 -2.5197 2.4294 35 1 3.7558 -0.9586 3.2719 36 1 8.1497 -1.6662 3.9529 37 1 8.0428 -1.9836 2.2031 38 1 9.1895 -3.8321 3.4867 39 1 7.7407 -4.3767 2.6066 40 1 9.1009 -5.5691 4.9836 41 1 7.6053 -6.2969 4.3500 42 1 8.8935 -8.8286 6.6900 43 1 5.7109 -4.8236 3.7892 44 1 5.6381 -4.6141 5.5558 45 1 5.8004 -2.1841 5.3213 46 1 4.4801 -2.7694 4.2750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692263434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:03 Heat of formation + Delta-G solvation = -57.323869 kcal Electronic energy + Delta-G solvation = -22618.479821 eV Core-core repulsion = 19348.734045 eV Total energy + Delta-G solvation = -3269.745776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22849 -39.13216 -38.07046 -35.95978 -34.73138 -34.34817 -32.26039 -30.18246 -28.71329 -28.02398 -27.00613 -25.05111 -24.49193 -23.63309 -21.97220 -21.01397 -19.84902 -18.49334 -18.29525 -17.51876 -16.83145 -16.68272 -16.26855 -16.01170 -15.83049 -15.43286 -15.33148 -15.10327 -14.86873 -14.41985 -14.20797 -14.05074 -13.69773 -13.45525 -13.20540 -13.06799 -13.01105 -12.75331 -12.73737 -12.59239 -12.38125 -12.30483 -12.12336 -11.86191 -11.76888 -11.62410 -11.55890 -11.28150 -10.80347 -10.61857 -9.77443 -9.39821 -9.07074 -8.20022 -6.30615 1.43801 1.45330 1.56734 1.58434 1.90093 2.41418 3.12525 3.15969 3.22195 3.53585 3.97575 3.98698 4.03303 4.04120 4.20317 4.23406 4.27117 4.31779 4.39478 4.45007 4.54720 4.64628 4.73400 4.76793 4.81431 4.83833 4.86557 4.93835 5.01326 5.02122 5.09549 5.19143 5.22259 5.29438 5.41568 5.44373 5.47928 5.63971 5.94872 6.02110 6.22971 6.33070 6.45813 6.55277 6.85474 7.13922 7.39537 8.91434 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.027495 B = 0.002934 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.116268 B = 9539.496890 C =10220.681103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.065 3.935 5 N -0.692 5.692 6 C 0.048 3.952 7 C 0.510 3.490 8 O -0.575 6.575 9 N -0.613 5.613 10 C 0.128 3.872 11 C 0.044 3.956 12 N -0.539 5.539 13 C 0.208 3.792 14 C -0.520 4.520 15 H 0.071 0.929 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.261 1.261 22 C 0.047 3.953 23 C 0.120 3.880 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.347 0.653 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.012 0.988 40 H 0.003 0.997 41 H -0.042 1.042 42 H 0.264 0.736 43 H 0.014 0.986 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 16.703 -7.036 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.063 4.063 5 N -0.326 5.326 6 C -0.084 4.084 7 C 0.300 3.700 8 O -0.454 6.454 9 N -0.346 5.346 10 C 0.005 3.995 11 C -0.086 4.086 12 N -0.263 5.263 13 C 0.082 3.918 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.185 1.185 22 C -0.081 4.081 23 C -0.002 4.002 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.031 0.969 40 H 0.022 0.978 41 H -0.024 1.024 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.228 16.549 -7.549 23.722 hybrid contribution 0.172 -0.881 0.618 1.090 sum -15.055 15.668 -6.930 22.807 Atomic orbital electron populations 1.21772 0.93719 1.02171 1.02357 1.21106 0.96348 0.96153 0.97853 1.21863 1.00685 0.95832 1.02288 1.22103 0.85894 1.00851 0.97459 1.60168 1.06407 1.26768 1.39254 1.21846 0.89604 1.02700 0.94238 1.21152 0.90899 0.76940 0.81052 1.90653 1.72567 1.49331 1.32836 1.48325 1.07476 1.57159 1.21659 1.21553 0.80048 0.95149 1.02748 1.22428 1.00157 0.95612 0.90372 1.62025 1.06962 1.27496 1.29857 1.19379 0.93966 0.83437 0.95056 1.21456 1.33751 1.01313 0.99335 0.91051 1.25969 0.95163 0.96190 1.02577 1.70105 1.39229 1.09058 1.39390 0.85338 0.77886 0.78336 0.78790 1.19733 1.21265 1.18469 1.22398 0.88290 0.96462 1.00998 1.22025 0.97967 0.92432 0.87764 0.92080 0.92055 0.92384 0.91686 0.92201 0.93346 0.92060 0.90601 0.93868 0.83340 0.86898 0.89529 0.89939 0.89508 0.90196 0.96928 0.97845 1.02433 0.92759 0.96797 0.89309 0.89362 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.10 -1.34 3.13 -10.79 -0.03 -1.37 16 3 C -0.15 -1.97 8.96 71.98 0.65 -1.32 16 4 C 0.07 0.97 5.14 86.30 0.44 1.41 16 5 N -0.69 -14.03 6.12 -517.93 -3.17 -17.20 16 6 C 0.05 0.93 4.53 85.55 0.39 1.31 16 7 C 0.51 14.16 7.74 87.66 0.68 14.84 16 8 O -0.57 -20.21 15.66 -3.03 -0.05 -20.26 16 9 N -0.61 -17.07 3.01 -818.05 -2.46 -19.53 16 10 C 0.13 3.91 6.59 86.35 0.57 4.48 16 11 C 0.04 1.59 5.62 86.38 0.49 2.07 16 12 N -0.54 -22.36 4.62 -899.92 -4.16 -26.52 16 13 C 0.21 10.89 4.72 85.56 0.40 11.29 16 14 C -0.52 -28.31 8.41 25.60 0.22 -28.09 16 15 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.94 -55.87 13.29 21.45 0.28 -55.58 16 18 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 C 0.05 1.65 5.45 86.37 0.47 2.12 16 23 C 0.12 2.96 6.50 86.33 0.56 3.52 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.74 6.68 -2.39 -0.02 0.73 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.35 7.34 6.69 -89.70 -0.60 6.74 16 34 H 0.11 1.97 7.66 -2.39 -0.02 1.95 16 35 H 0.09 1.22 8.00 -2.39 -0.02 1.20 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.09 2.70 7.07 -2.39 -0.02 2.68 16 38 H 0.08 2.89 7.99 -2.39 -0.02 2.87 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.00 0.20 7.97 -2.38 -0.02 0.18 16 41 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 42 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.09 3.24 6.67 -2.39 -0.02 3.23 16 45 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.12 2.00 6.02 -2.39 -0.01 1.99 16 Total: -1.00 -68.11 361.03 -1.24 -69.35 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.34 Total: 15.14 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.95 Total: 9.80 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -9.51 Total: -118.83 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -68.11 -1.24 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692263434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.025 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds