Wall clock time and date at job start Tue Mar 31 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 O 1.21281 * 120.00424 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99729 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00147 * 180.02562 * 6 4 3 8 8 C 1.50691 * 109.47489 * 180.02562 * 7 6 4 9 9 H 1.08003 * 119.99817 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00594 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99452 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00572 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46706 * 59.99952 * 12 10 8 14 14 H 1.48491 * 109.47177 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47205 * 300.00113 * 12 10 8 16 16 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 17 17 C 1.53001 * 109.47528 * 293.95568 * 16 2 1 18 18 H 1.08997 * 109.49902 * 55.07674 * 17 16 2 19 19 C 1.53115 * 109.50495 * 175.19637 * 17 16 2 20 20 C 1.53122 * 109.15944 * 177.59442 * 19 17 16 21 21 C 1.53038 * 109.27779 * 302.34720 * 20 19 17 22 22 N 1.46852 * 109.52470 * 59.17716 * 21 20 19 23 23 C 1.46900 * 110.99976 * 174.16193 * 22 21 20 24 24 C 1.46840 * 111.19639 * 298.25854 * 22 21 20 25 25 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 26 26 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 27 27 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 28 28 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 29 29 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 30 30 H 0.96997 * 120.00358 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.46758 * 300.00277 * 7 6 4 32 32 H 1.09000 * 109.46907 * 59.99604 * 7 6 4 33 33 H 0.96997 * 119.99656 * 180.02562 * 11 10 8 34 34 H 1.09009 * 109.47296 * 53.95365 * 16 2 1 35 35 H 1.09002 * 109.47055 * 173.95064 * 16 2 1 36 36 H 1.08999 * 109.52343 * 297.49884 * 19 17 16 37 37 H 1.09001 * 109.52226 * 57.69533 * 19 17 16 38 38 H 1.09001 * 109.50140 * 182.40753 * 20 19 17 39 39 H 1.08996 * 109.50285 * 62.28681 * 20 19 17 40 40 H 1.08996 * 109.46263 * 299.16041 * 21 20 19 41 41 H 1.09000 * 109.45697 * 179.18931 * 21 20 19 42 42 H 1.09001 * 109.47143 * 184.21642 * 23 22 21 43 43 H 1.09007 * 109.46996 * 304.20714 * 23 22 21 44 44 H 1.08991 * 109.47407 * 64.21165 * 23 22 21 45 45 H 1.08999 * 109.46785 * 301.72263 * 24 22 21 46 46 H 1.09002 * 109.46318 * 181.75602 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0055 1.4454 2.1410 6 7 2.0189 3.3199 1.5237 7 6 1.6709 3.9766 2.7861 8 6 2.2108 5.3835 2.7861 9 1 2.7588 5.7515 1.9313 10 6 2.0052 6.2009 3.8772 11 7 1.3374 5.7529 4.9179 12 14 2.6751 7.9447 3.8775 13 1 2.0839 8.7021 2.7453 14 1 2.3211 8.6107 5.1565 15 1 4.1523 7.9075 3.7304 16 6 1.9954 -0.7660 -1.1376 17 6 1.6314 -2.2426 -0.9704 18 1 0.5531 -2.3395 -0.8447 19 6 2.0743 -3.0220 -2.2117 20 6 1.7609 -4.5073 -2.0108 21 6 2.4680 -5.0068 -0.7489 22 7 2.0099 -4.2303 0.4103 23 6 2.5628 -4.7722 1.6588 24 6 2.3423 -2.8078 0.2614 25 1 -0.3634 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5612 1.9274 -0.8310 30 1 2.5243 3.8011 0.8499 31 1 0.5866 4.0039 2.8946 32 1 2.1052 3.4204 3.6168 33 1 1.1925 6.3280 5.6854 34 1 1.5611 -0.3872 -2.0629 35 1 3.0797 -0.6611 -1.1757 36 1 1.5379 -2.6514 -3.0851 37 1 3.1465 -2.8929 -2.3596 38 1 2.1127 -5.0733 -2.8733 39 1 0.6846 -4.6405 -1.9018 40 1 3.5451 -4.8860 -0.8642 41 1 2.2351 -6.0604 -0.5951 42 1 2.1491 -4.2261 2.5066 43 1 2.3018 -5.8271 1.7439 44 1 3.6475 -4.6656 1.6522 45 1 3.4200 -2.6972 0.1414 46 1 2.0183 -2.2642 1.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741252685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:51 Heat of formation + Delta-G solvation = -37.677131 kcal Electronic energy + Delta-G solvation = -22676.850783 eV Core-core repulsion = 19407.956954 eV Total energy + Delta-G solvation = -3268.893829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.63016 -38.81534 -36.63358 -34.14699 -33.68236 -32.31046 -31.48900 -28.59635 -27.05496 -26.79073 -26.41958 -23.62656 -22.88955 -22.13284 -20.80373 -19.78569 -19.53552 -17.09312 -16.04424 -15.92186 -15.70851 -15.32569 -15.18430 -14.75859 -14.65784 -14.51713 -14.22473 -13.94362 -13.43273 -13.23910 -12.96206 -12.46540 -12.42770 -12.31925 -12.22072 -11.94606 -11.90127 -11.61340 -11.49370 -11.17247 -11.14746 -10.97977 -10.81422 -10.60290 -10.52785 -10.40838 -10.29900 -9.39657 -8.95507 -8.71202 -8.43410 -8.14811 -7.82044 -6.15436 -4.22399 3.25545 3.30334 3.31798 3.43306 3.70951 3.80487 4.28264 4.47283 4.61927 4.67136 4.77118 4.88578 5.10323 5.20379 5.23753 5.29113 5.31856 5.34797 5.38747 5.43801 5.51515 5.55528 5.58897 5.64922 5.67897 5.72401 5.76726 5.78244 5.82598 5.89158 5.91895 6.21458 6.23097 6.42168 6.97211 6.99381 7.04874 7.17874 7.35272 7.48644 7.54558 7.69543 7.99067 8.66806 8.81120 9.16628 9.44477 10.94742 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.034809 B = 0.002747 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.190585 B =10191.657950 C =10553.704819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.520 5.520 3 C 0.035 3.965 4 C 0.499 3.501 5 O -0.538 6.538 6 N -0.716 5.716 7 C 0.252 3.748 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.060 3.940 17 C -0.080 4.080 18 H 0.082 0.918 19 C -0.116 4.116 20 C -0.115 4.115 21 C 0.054 3.946 22 N -0.545 5.545 23 C 0.026 3.974 24 C 0.068 3.932 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.389 0.611 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.028 0.972 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -18.418 -15.332 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.244 5.244 3 C -0.096 4.096 4 C 0.283 3.717 5 O -0.416 6.416 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.069 4.069 17 C -0.099 4.099 18 H 0.100 0.900 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.074 4.074 22 N -0.270 5.270 23 C -0.122 4.122 24 C -0.060 4.060 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.969 -19.049 -14.033 23.742 hybrid contribution 1.288 1.715 -1.035 2.381 sum 3.257 -17.334 -15.068 23.198 Atomic orbital electron populations 1.22599 0.86545 1.02626 1.01181 1.61603 1.08899 1.11887 1.41993 1.22021 1.01427 0.89792 0.96387 1.20301 0.80651 0.82362 0.88432 1.90627 1.40112 1.64282 1.46541 1.46457 1.55786 1.12561 1.21735 1.19061 0.96420 0.91416 0.79975 1.21196 1.36832 0.97260 1.02914 0.92008 1.24954 0.94964 0.98959 0.95151 1.69969 1.39477 1.36863 1.05985 0.86477 0.79341 0.83666 0.77434 1.20098 1.21070 1.20077 1.22189 0.99994 0.93236 0.91462 1.21188 1.01530 0.92924 0.94232 0.89975 1.21620 1.01026 0.95175 0.97644 1.21555 1.01455 0.95781 0.96501 1.22091 0.96834 0.97590 0.90885 1.61908 1.59797 1.03212 1.02058 1.22331 0.97172 1.00342 0.92346 1.22077 0.97052 0.87126 0.99713 0.91333 0.89037 0.96579 0.88592 0.92585 0.77894 0.95663 0.95581 0.92399 0.94714 0.90988 0.91866 0.92262 0.91709 0.91108 0.95245 0.91145 0.90980 0.91716 0.95888 0.95418 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.97 60.07 0.54 0.80 16 2 N -0.52 -7.29 3.97 -244.36 -0.97 -8.26 16 3 C 0.04 0.50 5.45 -4.98 -0.03 0.48 16 4 C 0.50 9.90 7.52 -10.99 -0.08 9.81 16 5 O -0.54 -12.83 14.33 5.56 0.08 -12.75 16 6 N -0.72 -15.02 5.55 -61.48 -0.34 -15.36 16 7 C 0.25 6.70 5.43 -5.20 -0.03 6.68 16 8 C -0.54 -14.79 9.28 -34.45 -0.32 -15.11 16 9 H 0.06 1.56 7.60 -52.48 -0.40 1.17 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 12 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.06 0.65 4.35 -3.83 -0.02 0.63 16 17 C -0.08 -0.82 2.27 -90.54 -0.21 -1.03 16 18 H 0.08 0.94 6.34 -51.93 -0.33 0.61 16 19 C -0.12 -0.97 5.29 -26.61 -0.14 -1.12 16 20 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 21 C 0.05 0.48 5.46 -3.83 -0.02 0.46 16 22 N -0.55 -5.91 4.91 -242.96 -1.19 -7.10 16 23 C 0.03 0.26 9.59 60.06 0.58 0.83 16 24 C 0.07 0.79 4.62 -3.84 -0.02 0.77 16 25 H 0.07 0.90 6.37 -51.93 -0.33 0.57 16 26 H 0.09 1.61 5.83 -51.93 -0.30 1.31 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.10 1.19 7.93 -51.93 -0.41 0.78 16 29 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.03 0.35 8.12 -51.92 -0.42 -0.07 16 35 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 1.31 7.76 -51.93 -0.40 0.91 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -31.59 361.06 -9.67 -41.26 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.40 Total: 2.61 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 0.00 Total: 3.79 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -1.77 Total: -56.21 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.59 -9.67 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741252685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.583 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds