Wall clock time and date at job start Tue Mar 31 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47376 * 2 1 4 4 C 1.50701 * 109.47613 * 239.99565 * 2 1 3 5 5 O 1.21280 * 119.99641 * 251.18518 * 4 2 1 6 6 N 1.34771 * 119.99723 * 71.17429 * 4 2 1 7 7 C 1.46501 * 120.00435 * 4.98486 * 6 4 2 8 8 C 1.46510 * 119.99662 * 184.98128 * 6 4 2 9 9 C 1.50698 * 109.46845 * 90.00518 * 8 6 4 10 10 H 1.07998 * 120.00169 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99668 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99836 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99897 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47452 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47013 * 119.99601 * 13 11 9 16 16 H 1.48501 * 109.47507 * 239.99716 * 13 11 9 17 17 N 1.46907 * 109.47074 * 119.99384 * 2 1 3 18 18 C 1.46957 * 110.99477 * 58.79669 * 17 2 1 19 19 C 1.53051 * 109.36149 * 176.81392 * 18 17 2 20 20 N 1.46955 * 109.36493 * 58.40511 * 19 18 17 21 21 C 1.46907 * 111.00016 * 176.81497 * 20 19 18 22 22 C 1.46957 * 110.87854 * 300.67483 * 20 19 18 23 23 H 1.08997 * 109.49436 * 299.35762 * 22 20 19 24 24 C 1.53005 * 109.48819 * 179.30886 * 22 20 19 25 25 C 1.46955 * 111.00016 * 295.00319 * 17 2 1 26 26 H 1.08998 * 109.47341 * 308.11297 * 1 2 3 27 27 H 1.09009 * 109.46650 * 68.10571 * 1 2 3 28 28 H 1.08995 * 109.47266 * 188.10483 * 1 2 3 29 29 H 1.08995 * 109.46988 * 94.23709 * 7 6 4 30 30 H 1.08995 * 109.46971 * 214.23965 * 7 6 4 31 31 H 1.08998 * 109.46846 * 334.23777 * 7 6 4 32 32 H 1.08997 * 109.46635 * 210.00116 * 8 6 4 33 33 H 1.08994 * 109.46727 * 330.00128 * 8 6 4 34 34 H 0.97001 * 119.99932 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.49436 * 296.77944 * 18 17 2 36 36 H 1.08993 * 109.48739 * 56.85219 * 18 17 2 37 37 H 1.09007 * 109.48678 * 298.43669 * 19 18 17 38 38 H 1.09002 * 109.48787 * 178.37219 * 19 18 17 39 39 H 1.09003 * 109.46862 * 183.79860 * 21 20 19 40 40 H 1.09000 * 109.46699 * 303.79870 * 21 20 19 41 41 H 1.08998 * 109.47448 * 63.79794 * 21 20 19 42 42 H 1.08998 * 109.47041 * 60.00399 * 24 22 20 43 43 H 1.08996 * 109.46913 * 180.02562 * 24 22 20 44 44 H 1.08995 * 109.47140 * 300.00515 * 24 22 20 45 45 H 1.09002 * 109.49352 * 63.21512 * 25 17 2 46 46 H 1.09002 * 109.48914 * 303.15133 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5539 -1.8009 -1.1304 6 7 1.9020 -0.1342 -2.4417 7 6 1.3723 1.2272 -2.5521 8 6 2.2900 -0.8694 -3.6481 9 6 1.1056 -1.6426 -4.1679 10 1 0.1586 -1.5919 -3.6511 11 6 1.2312 -2.4156 -5.3027 12 7 2.3845 -2.4777 -5.9317 13 14 -0.2368 -3.3746 -5.9467 14 1 -1.4081 -3.1379 -5.0651 15 1 -0.5556 -2.9248 -7.3256 16 1 0.0864 -4.8240 -5.9611 17 7 2.0196 -0.6924 1.1996 18 6 1.5250 -2.0754 1.2480 19 6 2.1199 -2.7846 2.4669 20 7 1.7487 -2.0526 3.6859 21 6 2.2384 -2.7450 4.8855 22 6 2.2433 -0.6696 3.6374 23 1 3.3306 -0.6747 3.5604 24 6 1.8253 0.0670 4.9116 25 6 1.6485 0.0396 2.4186 26 1 -0.3634 0.6343 0.8085 27 1 -0.3633 0.3833 -0.9536 28 1 -0.3633 -1.0173 0.1449 29 1 2.1985 1.9375 -2.5785 30 1 0.7872 1.3162 -3.4674 31 1 0.7369 1.4406 -1.6925 32 1 2.6272 -0.1659 -4.4094 33 1 3.0982 -1.5603 -3.4083 34 1 2.4727 -3.0212 -6.7303 35 1 0.4377 -2.0703 1.3251 36 1 1.8232 -2.6002 0.3405 37 1 3.2058 -2.8137 2.3765 38 1 1.7317 -3.8017 2.5211 39 1 1.8927 -2.2188 5.7752 40 1 1.8576 -3.7662 4.8963 41 1 3.3281 -2.7637 4.8748 42 1 2.2478 -0.4396 5.7794 43 1 2.1919 1.0928 4.8752 44 1 0.7380 0.0726 4.9879 45 1 0.5626 0.0688 2.5089 46 1 2.0366 1.0567 2.3644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761072841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:20 Heat of formation + Delta-G solvation = -28.860039 kcal Electronic energy + Delta-G solvation = -23975.150234 eV Core-core repulsion = 20706.638742 eV Total energy + Delta-G solvation = -3268.511491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48271 -39.90313 -37.05145 -36.51100 -34.76193 -33.35816 -32.22809 -29.71721 -28.81292 -27.56372 -27.39331 -25.95426 -24.71181 -23.89203 -22.48290 -20.45337 -19.86302 -18.67710 -17.98472 -17.30266 -16.80210 -16.47140 -16.28978 -16.18882 -15.88549 -15.55665 -15.46507 -14.75213 -14.61665 -14.10275 -14.07131 -13.88633 -13.57185 -13.49168 -13.28637 -13.08294 -13.02525 -12.82626 -12.73581 -12.63127 -12.59310 -12.36313 -12.21851 -12.18007 -11.93986 -11.75875 -11.63883 -11.44850 -10.65370 -10.23242 -9.40552 -9.36722 -9.16610 -8.22433 -6.37579 1.35777 1.38179 1.49803 1.83723 2.23919 2.40866 2.93125 3.00324 3.07017 3.64699 3.80990 4.04563 4.06004 4.10551 4.18735 4.25674 4.33588 4.38378 4.53244 4.59592 4.64065 4.65345 4.70649 4.71957 4.79623 4.82199 4.89491 4.93752 4.95462 4.98327 5.01865 5.14431 5.19694 5.23560 5.25805 5.38660 5.58129 5.85172 5.92227 5.98333 6.06384 6.19450 6.21930 6.71020 6.82068 7.28927 7.52673 8.84736 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.004152 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.011588 B = 6741.697902 C = 7221.574321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.128 0.872 4 C 0.503 3.497 5 O -0.579 6.579 6 N -0.609 5.609 7 C 0.070 3.930 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.283 1.283 17 N -0.534 5.534 18 C 0.041 3.959 19 C 0.068 3.932 20 N -0.546 5.546 21 C 0.022 3.978 22 C 0.080 3.920 23 H 0.032 0.968 24 C -0.136 4.136 25 C 0.061 3.939 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.021 0.979 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.023 0.977 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 9.018 20.669 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.035 4.035 3 H 0.146 0.854 4 C 0.291 3.709 5 O -0.459 6.459 6 N -0.340 5.340 7 C -0.072 4.072 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.209 1.209 17 N -0.258 5.258 18 C -0.086 4.086 19 C -0.060 4.060 20 N -0.271 5.271 21 C -0.126 4.126 22 C -0.029 4.029 23 H 0.050 0.950 24 C -0.194 4.194 25 C -0.066 4.066 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.039 0.961 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.146 8.409 20.551 22.588 hybrid contribution -0.143 -0.988 -1.066 1.460 sum -4.289 7.421 19.485 21.287 Atomic orbital electron populations 1.22420 0.93804 1.02898 1.04435 1.21594 0.95228 0.98921 0.87721 0.85403 1.21122 0.78657 0.85844 0.85244 1.90497 1.45806 1.23453 1.86140 1.48114 1.62831 1.16779 1.06319 1.22099 0.99705 0.81199 1.04151 1.18723 0.94802 0.90963 0.81607 1.21721 0.97212 1.28612 1.10297 0.92743 1.25866 0.99057 0.97406 0.96845 1.70067 1.25840 1.41202 1.19770 0.85368 0.78983 0.78015 0.78438 1.19013 1.19410 1.20851 1.62072 1.59769 1.02405 1.01575 1.22503 0.97005 0.89812 0.99327 1.22018 0.97511 0.97406 0.89114 1.62279 1.59798 1.02620 1.02427 1.22468 0.97584 0.99612 0.92889 1.21752 0.96698 0.88391 0.96046 0.94952 1.21812 1.02389 1.00254 0.94960 1.22349 0.99266 0.97600 0.87426 0.88422 0.90576 0.93450 0.91384 0.91491 0.88216 0.96065 0.98549 0.92437 0.94554 0.89900 0.95903 0.90042 0.89270 0.91145 0.96051 0.91512 0.90509 0.91641 0.93108 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.46 8.03 71.98 0.58 -3.88 16 2 C 0.08 2.29 1.92 44.17 0.08 2.37 16 3 H 0.13 3.03 7.41 -2.38 -0.02 3.01 16 4 C 0.50 21.40 6.80 87.66 0.60 22.00 16 5 O -0.58 -30.39 13.06 -3.03 -0.04 -30.43 16 6 N -0.61 -26.19 2.86 -851.14 -2.43 -28.62 16 7 C 0.07 2.10 9.80 127.77 1.25 3.36 16 8 C 0.26 14.31 5.22 85.63 0.45 14.76 16 9 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 10 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 11 C 0.01 0.41 5.46 84.66 0.46 0.88 16 12 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 13 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 N -0.53 -16.13 4.57 -874.86 -3.99 -20.13 16 18 C 0.04 1.39 4.74 86.31 0.41 1.79 16 19 C 0.07 1.96 5.62 86.31 0.49 2.44 16 20 N -0.55 -12.74 4.78 -896.51 -4.29 -17.03 16 21 C 0.02 0.40 9.13 127.69 1.17 1.57 16 22 C 0.08 1.67 2.56 44.92 0.12 1.79 16 23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 24 C -0.14 -1.91 8.86 71.98 0.64 -1.27 16 25 C 0.06 1.33 4.54 86.31 0.39 1.72 16 26 H 0.10 1.79 7.01 -2.39 -0.02 1.78 16 27 H 0.08 1.90 5.99 -2.38 -0.01 1.89 16 28 H 0.05 1.40 6.04 -2.39 -0.01 1.39 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.10 2.24 4.44 -2.39 -0.01 2.23 16 32 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 33 H 0.00 -0.23 7.36 -2.39 -0.02 -0.25 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.04 1.19 6.29 -2.39 -0.02 1.17 16 36 H 0.08 3.57 5.02 -2.39 -0.01 3.55 16 37 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.08 2.20 8.13 -2.39 -0.02 2.18 16 39 H 0.09 1.27 6.25 -2.39 -0.01 1.25 16 40 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 41 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.83 6.36 -2.39 -0.02 0.82 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 1.06 6.78 -2.39 -0.02 1.04 16 46 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -74.26 345.95 -0.63 -74.89 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.95 Total: 14.18 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.86 Total: 16.48 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -10.43 Total: -122.30 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.04 Total: -30.43 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.26 -0.63 -74.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.030 kcal (2) G-P(sol) polarization free energy of solvation -74.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds