Wall clock time and date at job start Tue Mar 31 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46991 * 2 1 4 4 N 1.46508 * 109.47041 * 120.00130 * 2 1 3 5 5 C 1.34771 * 119.99955 * 278.02379 * 4 2 1 6 6 O 1.21285 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00166 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.47187 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46818 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00333 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99340 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00430 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99631 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47336 * 90.00002 * 13 11 9 15 15 H 1.48498 * 109.47457 * 210.00503 * 13 11 9 16 16 H 1.48506 * 109.47147 * 330.00006 * 13 11 9 17 17 C 1.53006 * 109.46791 * 239.99776 * 2 1 3 18 18 H 1.09005 * 109.48548 * 177.34923 * 17 2 1 19 19 C 1.53048 * 109.49025 * 297.41498 * 17 2 1 20 20 N 1.46954 * 109.36353 * 178.37196 * 19 17 2 21 21 C 1.46905 * 111.00223 * 176.81402 * 20 19 17 22 22 C 1.46965 * 110.88037 * 300.67756 * 20 19 17 23 23 C 1.53053 * 109.35739 * 59.32341 * 22 20 19 24 24 N 1.46951 * 109.48946 * 57.31082 * 17 2 1 25 25 C 1.46898 * 111.00151 * 56.84131 * 24 17 2 26 26 H 1.08999 * 109.47227 * 299.99667 * 1 2 3 27 27 H 1.08999 * 109.47107 * 60.00387 * 1 2 3 28 28 H 1.09006 * 109.47196 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99852 * 98.02700 * 4 2 1 30 30 H 1.08991 * 109.46980 * 60.00250 * 7 5 4 31 31 H 1.09005 * 109.46805 * 300.00080 * 7 5 4 32 32 H 1.09006 * 109.46409 * 300.00003 * 8 7 5 33 33 H 1.08994 * 109.47108 * 59.99562 * 8 7 5 34 34 H 0.97001 * 120.00401 * 179.97438 * 12 11 9 35 35 H 1.09003 * 109.49255 * 298.33760 * 19 17 2 36 36 H 1.08999 * 109.48964 * 58.40160 * 19 17 2 37 37 H 1.09002 * 109.47222 * 179.84587 * 21 20 19 38 38 H 1.09001 * 109.46696 * 299.84581 * 21 20 19 39 39 H 1.08995 * 109.46940 * 59.84257 * 21 20 19 40 40 H 1.08999 * 109.48915 * 299.35542 * 22 20 19 41 41 H 1.08997 * 109.48765 * 179.28612 * 22 20 19 42 42 H 1.09005 * 109.48340 * 181.63628 * 23 22 20 43 43 H 1.08991 * 109.51172 * 61.58074 * 23 22 20 44 44 H 1.08993 * 109.47145 * 53.65952 * 25 24 17 45 45 H 1.09005 * 109.47194 * 173.66287 * 25 24 17 46 46 H 1.09001 * 109.47194 * 293.65940 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.0893 -0.0346 2.3713 6 8 1.7485 1.1274 2.4387 7 6 2.5922 -0.7448 3.6017 8 6 2.5716 0.2180 4.7906 9 6 3.0738 -0.4925 6.0210 10 1 3.3770 -1.5273 5.9612 11 6 3.1463 0.1788 7.2232 12 7 2.7767 1.4388 7.2962 13 14 3.7682 -0.7020 8.7486 14 1 5.2404 -0.5356 8.8508 15 1 3.1199 -0.1239 9.9530 16 1 3.4388 -2.1470 8.6547 17 6 2.0399 -0.7213 -1.2493 18 1 3.1289 -0.6805 -1.2737 19 6 1.5838 -2.1819 -1.2175 20 7 2.0417 -2.8620 -2.4371 21 6 1.6880 -4.2876 -2.4094 22 6 1.4996 -2.2082 -3.6364 23 6 1.9558 -0.7476 -3.6681 24 7 1.4979 -0.0675 -2.4485 25 6 1.8516 1.3580 -2.4763 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.2905 -1.6201 1.1424 30 1 3.6118 -1.0899 3.4307 31 1 1.9503 -1.5995 3.8156 32 1 3.2131 1.0729 4.5768 33 1 1.5518 0.5628 4.9613 34 1 2.8274 1.9109 8.1421 35 1 2.0084 -2.6767 -0.3440 36 1 0.4958 -2.2221 -1.1655 37 1 2.0361 -4.7662 -3.3247 38 1 2.1598 -4.7623 -1.5490 39 1 0.6057 -4.3919 -2.3337 40 1 0.4106 -2.2486 -3.6119 41 1 1.8630 -2.7220 -4.5264 42 1 1.5311 -0.2528 -4.5416 43 1 3.0437 -0.7071 -3.7204 44 1 2.9306 1.4668 -2.3676 45 1 1.5363 1.7922 -3.4251 46 1 1.3502 1.8728 -1.6568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896537818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:25 Heat of formation + Delta-G solvation = -56.357613 kcal Electronic energy + Delta-G solvation = -23191.105059 eV Core-core repulsion = 19921.401184 eV Total energy + Delta-G solvation = -3269.703876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36500 -40.14446 -37.07749 -36.02347 -35.52365 -33.28589 -32.22875 -30.32022 -29.93486 -27.71908 -26.33840 -25.65079 -24.36049 -23.55639 -22.09460 -21.18225 -20.23112 -18.85284 -17.68166 -17.46964 -16.69673 -16.54288 -16.45405 -16.27569 -15.89402 -15.64106 -15.51489 -14.98435 -14.81566 -14.47830 -14.22601 -14.00835 -13.65342 -13.37787 -13.23664 -13.12169 -13.01522 -12.80679 -12.73167 -12.61197 -12.46692 -12.30395 -12.09314 -11.90904 -11.81029 -11.63118 -11.39923 -11.29422 -10.70558 -10.56356 -10.10521 -9.45757 -9.27471 -8.17262 -6.31314 1.42520 1.45366 1.56259 1.73249 2.13473 2.44284 2.90072 2.95538 3.15679 3.58815 3.79343 3.94658 4.04324 4.10998 4.22274 4.33581 4.35300 4.44790 4.51350 4.52201 4.57241 4.57690 4.65328 4.68927 4.73367 4.77834 4.90321 4.91446 4.97496 5.02176 5.04952 5.07074 5.13292 5.31434 5.48222 5.54552 5.64511 5.86288 5.89340 5.91817 6.08918 6.13149 6.18631 6.59816 6.87284 7.35602 7.39157 8.95415 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.003183 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.854472 B = 8795.922043 C = 9483.836871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.150 3.850 3 H 0.063 0.937 4 N -0.716 5.716 5 C 0.514 3.486 6 O -0.585 6.585 7 C -0.120 4.120 8 C 0.043 3.957 9 C -0.543 4.543 10 H 0.076 0.924 11 C -0.008 4.008 12 N -0.938 5.938 13 Si 0.974 3.026 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.255 1.255 17 C 0.093 3.907 18 H 0.046 0.954 19 C 0.061 3.939 20 N -0.556 5.556 21 C 0.025 3.975 22 C 0.056 3.944 23 C 0.057 3.943 24 N -0.538 5.538 25 C 0.019 3.981 26 H 0.028 0.972 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.412 0.588 30 H 0.104 0.896 31 H 0.104 0.896 32 H -0.018 1.018 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.037 0.963 44 H 0.024 0.976 45 H 0.088 0.912 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 -11.529 -25.884 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 H 0.082 0.918 4 N -0.370 5.370 5 C 0.303 3.697 6 O -0.465 6.465 7 C -0.159 4.159 8 C 0.005 3.995 9 C -0.581 4.581 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.798 3.202 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.178 1.178 17 C -0.017 4.017 18 H 0.064 0.936 19 C -0.067 4.067 20 N -0.281 5.281 21 C -0.123 4.123 22 C -0.072 4.072 23 C -0.071 4.071 24 N -0.263 5.263 25 C -0.129 4.129 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.250 0.750 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.000 1.000 33 H 0.001 0.999 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.612 -10.585 -25.759 27.971 hybrid contribution 0.323 0.002 1.070 1.118 sum -2.290 -10.582 -24.689 26.959 Atomic orbital electron populations 1.21995 0.94326 1.02403 1.01475 1.20839 0.95139 0.96125 0.83411 0.91846 1.46032 1.67183 1.16008 1.07817 1.21305 0.76278 0.86600 0.85552 1.90653 1.50275 1.19428 1.86114 1.21646 1.03155 0.99878 0.91270 1.18679 0.94802 0.93716 0.92281 1.21725 1.43333 0.98657 0.94375 0.90579 1.26145 0.95578 0.95598 1.03174 1.70178 1.49045 1.11587 1.26980 0.85318 0.78353 0.79112 0.77439 1.19719 1.21215 1.17849 1.21679 0.96875 0.93828 0.89271 0.93612 1.22216 0.98869 0.92182 0.93446 1.62159 1.59930 1.03665 1.02337 1.22400 0.98975 0.87212 1.03712 1.22235 0.97808 0.93781 0.93339 1.22263 0.98424 0.94068 0.92313 1.62133 1.59351 1.02993 1.01804 1.22466 0.98731 0.88132 1.03573 0.95322 0.89952 0.91477 0.75033 0.87823 0.87741 0.99999 0.99942 0.92878 0.89687 0.93365 0.90140 0.90846 0.95359 0.94157 0.88585 0.88242 0.94474 0.95768 0.89303 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.89 71.98 0.64 -3.02 16 2 C 0.15 3.89 1.85 44.99 0.08 3.97 16 3 H 0.06 1.98 6.19 -2.39 -0.01 1.97 16 4 N -0.72 -19.94 5.01 -442.52 -2.22 -22.15 16 5 C 0.51 20.20 7.75 87.66 0.68 20.88 16 6 O -0.59 -29.10 15.57 -3.05 -0.05 -29.15 16 7 C -0.12 -4.86 5.64 29.85 0.17 -4.69 16 8 C 0.04 2.42 4.26 29.85 0.13 2.54 16 9 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 10 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 11 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 12 N -0.94 -60.07 13.29 21.45 0.28 -59.79 16 13 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 16 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 17 C 0.09 1.88 1.94 44.92 0.09 1.97 16 18 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 19 C 0.06 1.06 4.42 86.31 0.38 1.44 16 20 N -0.56 -8.62 4.97 -921.92 -4.58 -13.20 16 21 C 0.02 0.29 9.60 127.69 1.23 1.52 16 22 C 0.06 0.74 5.62 86.31 0.49 1.23 16 23 C 0.06 0.81 5.61 86.31 0.48 1.29 16 24 N -0.54 -9.65 3.92 -896.56 -3.52 -13.16 16 25 C 0.02 0.33 8.85 127.69 1.13 1.46 16 26 H 0.03 0.90 8.01 -2.39 -0.02 0.88 16 27 H 0.08 1.91 7.13 -2.39 -0.02 1.89 16 28 H 0.07 1.50 6.46 -2.38 -0.02 1.49 16 29 H 0.41 8.68 6.75 -92.71 -0.63 8.05 16 30 H 0.10 3.69 8.14 -2.39 -0.02 3.68 16 31 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 32 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 33 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.08 1.34 6.46 -2.39 -0.02 1.33 16 36 H 0.05 0.88 6.42 -2.39 -0.02 0.87 16 37 H 0.08 0.76 8.13 -2.39 -0.02 0.74 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 0.95 8.13 -2.39 -0.02 0.93 16 42 H 0.10 1.06 8.07 -2.38 -0.02 1.04 16 43 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.02 0.45 8.12 -2.39 -0.02 0.43 16 45 H 0.09 1.20 8.02 -2.38 -0.02 1.18 16 46 H 0.06 1.29 6.35 -2.39 -0.02 1.27 16 Total: -1.00 -76.05 356.10 -1.54 -77.59 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.32 Total: 15.58 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.19 Total: -2.33 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -10.03 Total: -108.31 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.15 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.05 -1.54 -77.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896537818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.233 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds