Wall clock time and date at job start Tue Mar 31 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46793 * 2 1 4 4 N 1.46903 * 109.46721 * 120.00144 * 2 1 3 5 5 C 1.52995 * 109.46882 * 240.00174 * 2 1 3 6 6 C 1.53038 * 109.45739 * 180.02562 * 5 2 1 7 7 C 1.53192 * 109.31450 * 178.63078 * 6 5 2 8 8 N 1.46922 * 108.77862 * 54.62752 * 7 6 5 9 9 C 1.34777 * 120.62881 * 126.37028 * 8 7 6 10 10 O 1.21282 * 120.00142 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99986 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47087 * 40.00373 * 11 9 8 13 13 N 1.46905 * 109.47121 * 160.00176 * 11 9 8 14 14 C 1.52998 * 109.47064 * 280.00094 * 11 9 8 15 15 C 1.53004 * 109.47139 * 174.99796 * 14 11 9 16 16 C 1.50698 * 109.47137 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00164 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00019 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47051 * 60.00237 * 20 18 16 22 22 H 1.48502 * 109.46995 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46717 * 299.99835 * 20 18 16 24 24 C 1.46925 * 118.74032 * 306.65099 * 8 7 6 25 25 C 1.52757 * 109.00855 * 53.30690 * 24 8 7 26 26 H 1.08996 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 300.00254 * 1 2 3 28 28 H 1.09004 * 109.46954 * 59.99910 * 1 2 3 29 29 H 1.00902 * 110.99692 * 296.04120 * 4 2 1 30 30 H 1.00895 * 110.99880 * 60.00594 * 4 2 1 31 31 H 1.09004 * 109.46139 * 299.96757 * 5 2 1 32 32 H 1.09000 * 109.50487 * 58.67483 * 6 5 2 33 33 H 1.09007 * 109.52527 * 298.59205 * 6 5 2 34 34 H 1.09000 * 109.58483 * 294.84414 * 7 6 5 35 35 H 1.08995 * 109.70847 * 174.49335 * 7 6 5 36 36 H 1.00901 * 110.99869 * 60.00289 * 13 11 9 37 37 H 1.00896 * 110.99543 * 183.95412 * 13 11 9 38 38 H 1.08995 * 109.47368 * 294.99520 * 14 11 9 39 39 H 1.09001 * 109.47446 * 54.99927 * 14 11 9 40 40 H 1.08994 * 109.47287 * 300.00153 * 15 14 11 41 41 H 1.09004 * 109.46568 * 60.00209 * 15 14 11 42 42 H 0.96998 * 120.00540 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.58525 * 173.14215 * 24 8 7 44 44 H 1.08999 * 109.58305 * 293.56346 * 24 8 7 45 45 H 1.08997 * 109.56337 * 185.55610 * 25 24 8 46 46 H 1.08991 * 109.39366 * 65.51610 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 2.0400 -0.7212 -1.2492 6 6 3.5704 -0.7216 -1.2487 7 6 4.0773 -1.4741 -2.4830 8 7 3.4745 -0.8762 -3.6820 9 6 4.2478 -0.4563 -4.7029 10 8 5.4534 -0.5707 -4.6372 11 6 3.6145 0.1554 -5.9259 12 1 2.7908 0.8022 -5.6235 13 7 4.6167 0.9462 -6.6527 14 6 3.0839 -0.9550 -6.8349 15 6 2.3319 -0.3335 -8.0135 16 6 1.8098 -1.4272 -8.9092 17 1 1.9953 -2.4621 -8.6623 18 6 1.0952 -1.1067 -10.0439 19 7 0.8696 0.1536 -10.3450 20 14 0.4474 -2.4624 -11.1538 21 1 -0.4752 -3.3344 -10.3833 22 1 -0.2824 -1.8592 -12.2979 23 1 1.5842 -3.2713 -11.6623 24 6 2.0130 -0.7392 -3.7445 25 6 1.5289 0.0001 -2.4985 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7502 -0.1989 2.0372 30 1 1.6962 -1.6480 1.2227 31 1 1.6770 -1.7490 -1.2488 32 1 3.9338 -1.2149 -0.3472 33 1 3.9350 0.3054 -1.2736 34 1 3.7907 -2.5235 -2.4144 35 1 5.1628 -1.3950 -2.5415 36 1 5.3911 0.3687 -6.9440 37 1 4.2015 1.4190 -7.4414 38 1 3.9182 -1.5484 -7.2086 39 1 2.4071 -1.5954 -6.2692 40 1 1.4975 0.2600 -7.6399 41 1 3.0087 0.3068 -8.5792 42 1 0.3672 0.3791 -11.1434 43 1 1.7368 -0.1730 -4.6340 44 1 1.5546 -1.7274 -3.7810 45 1 0.4391 0.0204 -2.4865 46 1 1.9116 1.0205 -2.5115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118203001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:23 Heat of formation + Delta-G solvation = -83.652746 kcal Electronic energy + Delta-G solvation = -23280.020060 eV Core-core repulsion = 20009.132579 eV Total energy + Delta-G solvation = -3270.887481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45297 -39.34524 -37.14829 -36.63403 -34.85956 -32.89854 -32.25004 -31.69456 -29.34100 -28.39028 -26.71481 -25.25131 -23.99983 -22.77982 -21.82941 -21.06182 -20.00854 -18.90258 -18.25106 -17.12485 -16.78931 -16.51459 -16.25706 -15.83890 -15.74571 -15.49352 -15.08398 -15.06883 -14.63389 -14.49113 -14.21859 -14.15424 -13.83470 -13.59359 -13.40732 -13.20769 -13.02862 -12.87075 -12.65083 -12.54196 -12.27626 -12.15565 -11.81054 -11.69133 -11.50818 -11.44926 -11.34673 -11.30246 -10.62839 -10.55035 -9.71174 -9.60571 -9.48814 -8.20843 -6.31369 1.40346 1.41894 1.49817 1.59153 1.97757 2.40393 3.12642 3.46224 3.58198 3.71088 3.74275 3.85685 4.04496 4.12264 4.19509 4.21912 4.34205 4.37727 4.43710 4.49005 4.59264 4.65337 4.74402 4.79219 4.88795 4.90677 5.00098 5.05226 5.06687 5.11078 5.12190 5.26041 5.34474 5.46280 5.53265 5.63530 5.65173 5.80373 6.04969 6.21310 6.34396 6.38443 6.46224 6.68937 6.83445 7.16613 7.37678 8.89685 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.003705 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.884179 B = 7555.116992 C = 8357.971476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 H 0.069 0.931 4 N -0.849 5.849 5 C -0.072 4.072 6 C -0.105 4.105 7 C 0.106 3.894 8 N -0.606 5.606 9 C 0.523 3.477 10 O -0.577 6.577 11 C 0.081 3.919 12 H 0.107 0.893 13 N -0.831 5.831 14 C -0.119 4.119 15 C 0.033 3.967 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.098 3.902 25 C -0.127 4.127 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.347 0.653 30 H 0.345 0.655 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.343 0.657 37 H 0.353 0.647 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.004 0.996 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -1.693 22.220 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.015 4.015 3 H 0.087 0.913 4 N -0.379 5.379 5 C -0.091 4.091 6 C -0.144 4.144 7 C -0.016 4.016 8 N -0.339 5.339 9 C 0.312 3.688 10 O -0.457 6.457 11 C -0.034 4.034 12 H 0.125 0.875 13 N -0.362 5.362 14 C -0.159 4.159 15 C -0.004 4.004 16 C -0.584 4.584 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.783 3.217 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.024 4.024 25 C -0.165 4.165 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.121 -1.084 22.538 22.591 hybrid contribution -1.506 -1.115 -1.562 2.439 sum -2.627 -2.199 20.976 21.254 Atomic orbital electron populations 1.22651 0.96823 1.02405 1.02629 1.21323 0.92528 0.97659 0.89994 0.91252 1.58839 1.67596 1.07000 1.04438 1.21095 0.94685 0.99920 0.93428 1.21725 0.95888 1.00034 0.96714 1.21725 0.98614 0.97292 0.83931 1.48147 1.07814 1.60638 1.17282 1.20780 0.86579 0.76982 0.84478 1.90595 1.15989 1.57672 1.81404 1.21425 0.94788 0.95267 0.91888 0.87499 1.58770 1.11227 1.33863 1.32358 1.22132 0.99452 0.97269 0.97078 1.18942 0.94182 0.95233 0.92081 1.21577 1.34532 0.93696 1.08574 0.92757 1.25849 0.96361 0.97715 0.99241 1.70052 1.41212 1.18416 1.26897 0.85607 0.78619 0.79229 0.78241 1.19092 1.20811 1.19759 1.21933 0.78315 1.02105 1.00059 1.21945 1.02140 0.99228 0.93195 0.92203 0.92359 0.91640 0.83954 0.84213 0.90362 0.88861 0.93486 0.90476 0.91303 0.84390 0.83237 0.93985 0.91548 0.97780 0.98068 0.92706 0.89756 0.89998 0.88454 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 9.13 71.98 0.66 -1.28 16 2 C 0.10 1.21 2.94 44.92 0.13 1.34 16 3 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 4 N -0.85 -9.23 8.44 -168.67 -1.42 -10.66 16 5 C -0.07 -1.09 1.89 -10.77 -0.02 -1.11 16 6 C -0.11 -2.00 5.22 30.67 0.16 -1.84 16 7 C 0.11 2.53 6.44 86.36 0.56 3.09 16 8 N -0.61 -16.65 2.98 -819.77 -2.44 -19.09 16 9 C 0.52 18.40 6.95 87.66 0.61 19.01 16 10 O -0.58 -24.03 15.66 -3.04 -0.05 -24.07 16 11 C 0.08 2.87 2.36 44.17 0.10 2.98 16 12 H 0.11 3.54 6.53 -2.39 -0.02 3.52 16 13 N -0.83 -30.13 8.94 -171.79 -1.54 -31.67 16 14 C -0.12 -4.77 4.55 30.59 0.14 -4.63 16 15 C 0.03 1.61 4.74 29.85 0.14 1.75 16 16 C -0.55 -29.91 9.11 25.60 0.23 -29.67 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 20 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C 0.10 2.18 5.56 86.22 0.48 2.66 16 25 C -0.13 -2.15 5.03 30.53 0.15 -1.99 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.72 6.40 -2.38 -0.02 0.70 16 29 H 0.35 2.94 9.07 -89.69 -0.81 2.13 16 30 H 0.34 3.08 9.00 -89.70 -0.81 2.27 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.63 7.56 -2.39 -0.02 1.62 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.95 7.00 -2.39 -0.02 1.93 16 36 H 0.34 12.73 8.58 -89.69 -0.77 11.96 16 37 H 0.35 12.76 7.55 -89.70 -0.68 12.08 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.50 7.22 -2.39 -0.02 2.48 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.00 0.05 6.87 -2.39 -0.02 0.04 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.08 2.08 5.19 -2.39 -0.01 2.07 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.10 1.32 6.36 -2.39 -0.02 1.31 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -66.01 354.33 -1.39 -67.40 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -2.06 Total: 35.54 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 3.81 Total: -8.85 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.12 Total: -115.16 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.01 -1.39 -67.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118203001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.249 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds