Wall clock time and date at job start Tue Mar 31 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47266 * 2 1 4 4 C 1.46900 * 110.99823 * 293.94969 * 3 2 1 5 5 C 1.46906 * 111.00194 * 169.99918 * 3 2 1 6 6 C 1.52999 * 109.46897 * 190.00054 * 5 3 2 7 7 C 1.50706 * 109.46573 * 179.97438 * 6 5 3 8 8 O 1.21274 * 120.00042 * 359.72068 * 7 6 5 9 9 N 1.34777 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.47433 * 125.64688 * 0.02779 * 9 7 6 11 11 C 1.54910 * 104.82934 * 204.08751 * 10 9 7 12 12 C 1.55155 * 101.58418 * 322.98996 * 11 10 9 13 13 H 1.09000 * 110.72333 * 277.13849 * 12 11 10 14 14 N 1.46505 * 110.72225 * 153.86128 * 12 11 10 15 15 C 1.36939 * 119.99238 * 86.45358 * 14 12 11 16 16 H 1.08000 * 120.00222 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99586 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00063 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00116 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46960 * 120.00086 * 19 17 15 22 22 H 1.48498 * 109.47499 * 240.00452 * 19 17 15 23 23 C 1.47021 * 125.64871 * 179.71262 * 9 7 6 24 24 H 1.08994 * 109.88347 * 298.39896 * 23 9 7 25 25 C 1.52999 * 109.87870 * 59.56638 * 23 9 7 26 26 H 1.09001 * 109.47115 * 300.00351 * 1 2 3 27 27 H 1.09004 * 109.47016 * 60.00091 * 1 2 3 28 28 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47115 * 239.99649 * 2 1 3 30 30 H 1.09004 * 109.47016 * 119.99908 * 2 1 3 31 31 H 1.08988 * 109.47607 * 296.04741 * 4 3 2 32 32 H 1.08999 * 109.46920 * 56.05251 * 4 3 2 33 33 H 1.09005 * 109.46934 * 176.04425 * 4 3 2 34 34 H 1.09000 * 109.47033 * 69.99800 * 5 3 2 35 35 H 1.09001 * 109.46544 * 309.99856 * 5 3 2 36 36 H 1.09000 * 109.47486 * 60.00024 * 6 5 3 37 37 H 1.09001 * 109.47362 * 299.99301 * 6 5 3 38 38 H 1.08994 * 110.36728 * 322.92805 * 10 9 7 39 39 H 1.08997 * 110.36547 * 85.14244 * 10 9 7 40 40 H 1.08997 * 111.00154 * 81.06538 * 11 10 9 41 41 H 1.09002 * 111.00439 * 204.87664 * 11 10 9 42 42 H 0.96992 * 120.00161 * 266.46149 * 14 12 11 43 43 H 0.96997 * 119.99879 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47613 * 58.54700 * 25 23 9 45 45 H 1.09001 * 109.46874 * 178.54768 * 25 23 9 46 46 H 1.09001 * 109.47081 * 298.54570 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 -1.2534 5 6 3.4686 1.4311 0.2382 6 6 3.8999 2.8791 0.4791 7 6 5.3862 2.9263 0.7241 8 8 6.0354 1.9021 0.7126 9 7 5.9929 4.1062 0.9610 10 6 5.3267 5.4205 1.0093 11 6 6.4442 6.4436 0.6865 12 6 7.6645 5.8090 1.4046 13 1 7.6673 6.0692 2.4631 14 7 8.9155 6.2227 0.7643 15 6 9.5230 7.3912 1.1398 16 1 9.0800 8.0074 1.9082 17 6 10.7087 7.7830 0.5335 18 7 11.2488 7.0316 -0.4026 19 14 11.5370 9.3772 1.0451 20 1 10.7343 10.0329 2.1086 21 1 12.8978 9.0841 1.5623 22 1 11.6375 10.2816 -0.1284 23 6 7.4277 4.2951 1.2205 24 1 7.7142 3.7602 2.1259 25 6 8.2431 3.7844 0.0309 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1770 1.5790 -2.0859 32 1 0.5920 2.0179 -1.4052 33 1 1.9825 3.1098 -1.1988 34 1 3.9926 1.0358 -0.6321 35 1 3.7122 0.8289 1.1135 36 1 3.3759 3.2744 1.3494 37 1 3.6563 3.4813 -0.3962 38 1 4.5364 5.4730 0.2605 39 1 4.9189 5.6028 2.0036 40 1 6.6144 6.5102 -0.3880 41 1 6.2101 7.4228 1.1043 42 1 9.3135 5.6691 0.0744 43 1 12.0771 7.3056 -0.8265 44 1 7.9455 4.3202 -0.8705 45 1 9.3037 3.9511 0.2191 46 1 8.0611 2.7182 -0.1035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179856491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:06 Heat of formation + Delta-G solvation = -14.778016 kcal Electronic energy + Delta-G solvation = -22929.388555 eV Core-core repulsion = 19661.487706 eV Total energy + Delta-G solvation = -3267.900849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06977 -38.25916 -37.26105 -34.18300 -32.65427 -31.57004 -30.69951 -29.75390 -28.65036 -26.82703 -25.20746 -23.89790 -23.05457 -22.12981 -20.99213 -19.46423 -18.56784 -17.55042 -17.03580 -16.23613 -15.74527 -15.56706 -15.04259 -14.81235 -14.48027 -14.32112 -13.78245 -13.59555 -13.29581 -13.12045 -12.76410 -12.50372 -12.37127 -12.11310 -12.05904 -11.95884 -11.76972 -11.54375 -11.48972 -11.22332 -11.13417 -11.05348 -10.95855 -10.83112 -10.45789 -10.19999 -9.97143 -9.73320 -9.46203 -8.96449 -8.60931 -8.37368 -7.03254 -5.82789 -3.12546 2.82789 3.10094 3.40074 3.45827 3.48115 3.74546 4.54279 4.65529 4.69448 4.83566 4.90849 4.96294 5.06121 5.19051 5.21529 5.27581 5.28839 5.35887 5.42727 5.53478 5.54616 5.60663 5.63021 5.67011 5.72589 5.77198 5.82755 5.83422 5.94660 6.06297 6.11634 6.23051 6.33079 6.56235 6.57151 6.72108 6.78392 6.79273 6.84006 6.99372 7.65813 7.80356 8.35297 8.38467 9.47463 10.02791 10.37722 11.39789 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.046109 B = 0.002911 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.114399 B = 9614.858547 C = 9856.636004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.071 3.929 6 C -0.132 4.132 7 C 0.527 3.473 8 O -0.547 6.547 9 N -0.609 5.609 10 C 0.098 3.902 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.062 0.938 14 N -0.718 5.718 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.128 3.872 24 H 0.071 0.929 25 C -0.158 4.158 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.391 0.609 43 H 0.256 0.744 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.531 -9.426 0.529 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.132 4.132 5 C -0.057 4.057 6 C -0.172 4.172 7 C 0.315 3.685 8 O -0.426 6.426 9 N -0.343 5.343 10 C -0.025 4.025 11 C -0.195 4.195 12 C 0.061 3.939 13 H 0.080 0.920 14 N -0.361 5.361 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.025 3.975 24 H 0.089 0.911 25 C -0.216 4.216 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.229 0.771 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.358 -9.645 0.962 22.548 hybrid contribution 0.975 0.481 -0.724 1.307 sum -19.382 -9.164 0.238 21.441 Atomic orbital electron populations 1.21808 0.94854 1.01497 1.02467 1.22077 0.96018 0.88727 1.00975 1.62009 1.14063 1.16046 1.34842 1.22502 1.01401 0.99485 0.89785 1.21818 0.86265 0.95713 1.01895 1.21591 0.92493 0.98828 1.04288 1.20191 0.89531 0.82162 0.76601 1.90674 1.66916 1.32912 1.52053 1.48634 1.09491 1.06441 1.69773 1.22377 0.96387 0.82935 1.00823 1.23542 0.95829 0.97592 1.02507 1.21178 0.87352 0.89132 0.96204 0.91990 1.42680 1.22619 1.25431 1.45403 1.19284 1.03428 0.97855 1.16816 0.91001 1.24765 0.98107 0.98960 0.98974 1.69672 1.21113 1.38551 1.28565 0.86103 0.79331 0.83021 0.77607 1.20508 1.21840 1.21862 1.21820 0.79336 0.98026 0.98363 0.91144 1.21992 1.01008 1.00975 0.97608 0.91809 0.92690 0.92356 0.94886 0.90677 0.95566 0.91150 0.91123 0.93913 0.89964 0.88298 0.89170 0.91401 0.91607 0.90716 0.90599 0.77107 0.93432 0.92599 0.90300 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.84 37.16 0.37 -0.64 16 2 C 0.05 0.42 5.68 -3.83 -0.02 0.39 16 3 N -0.55 -5.21 4.76 -242.92 -1.16 -6.36 16 4 C 0.02 0.14 9.13 60.06 0.55 0.68 16 5 C 0.07 0.79 4.25 -3.82 -0.02 0.78 16 6 C -0.13 -1.46 4.63 -27.88 -0.13 -1.59 16 7 C 0.53 7.99 7.63 -10.98 -0.08 7.90 16 8 O -0.55 -10.14 14.88 5.56 0.08 -10.06 16 9 N -0.61 -9.32 3.08 -163.01 -0.50 -9.82 16 10 C 0.10 1.26 6.69 -2.52 -0.02 1.24 16 11 C -0.15 -2.47 6.77 -24.58 -0.17 -2.64 16 12 C 0.17 3.32 3.45 -66.09 -0.23 3.09 16 13 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 14 N -0.72 -17.33 5.02 -51.64 -0.26 -17.59 16 15 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 19 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.13 2.29 3.49 -66.95 -0.23 2.06 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 C -0.16 -3.01 7.93 37.16 0.29 -2.71 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.36 6.47 -51.93 -0.34 0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 30 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 31 H 0.03 0.22 8.14 -51.94 -0.42 -0.20 16 32 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 33 H 0.07 0.56 6.47 -51.93 -0.34 0.22 16 34 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.89 6.26 -51.93 -0.32 0.57 16 38 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.39 10.01 4.94 -40.82 -0.20 9.81 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 45 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 46 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -30.74 357.51 -8.72 -39.46 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.04 Total: 7.46 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 0.07 Total: 1.49 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -1.19 Total: -60.63 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.74 -8.72 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179856491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.687 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds