Wall clock time and date at job start Tue Mar 31 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47236 * 2 1 4 4 N 1.46901 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00071 * 293.95951 * 4 3 2 6 6 C 1.46898 * 110.99984 * 170.00237 * 4 3 2 7 7 C 1.50704 * 109.46804 * 190.00523 * 6 4 3 8 8 O 1.21279 * 120.00220 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99640 * 180.02562 * 7 6 4 10 10 C 1.47022 * 125.64929 * 359.69135 * 9 7 6 11 11 C 1.54340 * 107.26573 * 178.85153 * 10 9 7 12 12 C 1.55148 * 103.01948 * 338.13758 * 11 10 9 13 13 H 1.09003 * 111.00837 * 277.23291 * 12 11 10 14 14 N 1.46504 * 111.03866 * 153.39597 * 12 11 10 15 15 C 1.46495 * 119.99923 * 307.78635 * 14 12 11 16 16 C 1.36938 * 119.99919 * 127.78409 * 14 12 11 17 17 H 1.07999 * 120.00376 * 23.26475 * 16 14 12 18 18 C 1.38816 * 119.99869 * 203.26449 * 16 14 12 19 19 N 1.31621 * 119.99905 * 13.81977 * 18 16 14 20 20 Si 1.86794 * 119.99765 * 193.81937 * 18 16 14 21 21 H 1.48498 * 109.47552 * 60.00178 * 20 18 16 22 22 H 1.48500 * 109.46862 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47708 * 299.99910 * 20 18 16 24 24 C 1.47425 * 125.64664 * 179.97438 * 9 7 6 25 25 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47049 * 299.99938 * 1 2 3 27 27 H 1.09005 * 109.47108 * 59.99629 * 1 2 3 28 28 H 1.09005 * 109.47378 * 240.00495 * 2 1 3 29 29 H 1.09001 * 109.47519 * 120.00089 * 2 1 3 30 30 H 1.09005 * 109.47051 * 60.00063 * 3 2 1 31 31 H 1.08992 * 109.47130 * 300.00394 * 3 2 1 32 32 H 1.08995 * 109.46955 * 296.04187 * 5 4 3 33 33 H 1.09000 * 109.47143 * 56.04861 * 5 4 3 34 34 H 1.09002 * 109.47000 * 176.04388 * 5 4 3 35 35 H 1.09000 * 109.47023 * 310.00139 * 6 4 3 36 36 H 1.08997 * 109.47367 * 70.00406 * 6 4 3 37 37 H 1.09007 * 109.88040 * 298.39107 * 10 9 7 38 38 H 1.08997 * 109.88792 * 59.56087 * 10 9 7 39 39 H 1.09007 * 110.84721 * 219.67163 * 11 10 9 40 40 H 1.08993 * 110.66749 * 96.52254 * 11 10 9 41 41 H 1.09000 * 109.46895 * 95.15838 * 15 14 12 42 42 H 1.08999 * 109.47295 * 215.15862 * 15 14 12 43 43 H 1.08999 * 109.47013 * 335.16139 * 15 14 12 44 44 H 0.97001 * 119.99710 * 180.02562 * 19 18 16 45 45 H 1.08993 * 110.36643 * 322.92889 * 24 9 7 46 46 H 1.08996 * 110.36552 * 85.25480 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8858 1.2542 6 6 4.0355 2.7931 -0.2374 7 6 5.5219 2.7182 -0.4743 8 8 6.0869 1.6453 -0.4478 9 7 6.2234 3.8435 -0.7154 10 6 5.6666 5.2026 -0.7817 11 6 6.8418 6.1664 -1.0502 12 6 8.0744 5.3580 -0.5664 13 1 8.2005 5.4460 0.5128 14 7 9.2886 5.7787 -1.2700 15 6 9.3091 5.8214 -2.7342 16 6 10.4043 6.1322 -0.5590 17 1 10.5427 5.7642 0.4469 18 6 11.3574 6.9635 -1.1312 19 7 11.0755 7.6281 -2.2318 20 14 13.0400 7.1389 -0.3392 21 1 13.7047 5.8120 -0.2897 22 1 13.8680 8.0772 -1.1388 23 1 12.8854 7.6668 1.0401 24 6 7.6751 3.9147 -0.9623 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.7436 1.5263 2.0866 33 1 3.6293 -0.1145 1.4059 34 1 5.1223 0.8325 1.2000 35 1 3.5493 3.2235 -1.1130 36 1 3.8373 3.4190 0.6326 37 1 4.9399 5.2664 -1.5917 38 1 5.1916 5.4553 0.1662 39 1 6.7310 7.0838 -0.4719 40 1 6.9206 6.3900 -2.1141 41 1 9.0791 6.8321 -3.0715 42 1 10.2980 5.5351 -3.0923 43 1 8.5653 5.1288 -3.1283 44 1 11.7417 8.2087 -2.6319 45 1 8.2016 3.1911 -0.3401 46 1 7.8898 3.7375 -2.0161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193622325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:50 Heat of formation + Delta-G solvation = -1.141728 kcal Electronic energy + Delta-G solvation = -22913.233955 eV Core-core repulsion = 19645.924420 eV Total energy + Delta-G solvation = -3267.309535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.93248 -38.09170 -36.86561 -34.79553 -33.37548 -31.69807 -29.87176 -28.88073 -27.38611 -27.07082 -26.04988 -24.03250 -22.72092 -22.24005 -20.94379 -19.31881 -18.89657 -17.07645 -17.02056 -16.18034 -15.82924 -15.45083 -15.30751 -14.69781 -14.40586 -14.11547 -13.71191 -13.41461 -13.33389 -13.04582 -12.66831 -12.51744 -12.45804 -12.20606 -12.04592 -11.92280 -11.84264 -11.44165 -11.33942 -11.28980 -10.95275 -10.80822 -10.78457 -10.50813 -10.49823 -10.28040 -9.90487 -9.87529 -9.52234 -8.60401 -8.46433 -8.29404 -6.81740 -5.77882 -3.25470 2.84582 3.06680 3.37151 3.42760 3.44399 3.85648 4.45525 4.60430 4.67461 4.77653 5.01052 5.01923 5.09768 5.16429 5.22344 5.26582 5.30740 5.36868 5.42800 5.51001 5.52894 5.55176 5.60261 5.74673 5.77001 5.88475 5.90779 5.98409 6.01612 6.12702 6.30910 6.38478 6.54140 6.62240 6.75892 6.80175 6.87515 6.91357 7.32075 7.67341 7.76463 7.82154 8.33503 8.43976 9.17222 9.79641 10.28389 11.26564 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.044540 B = 0.002928 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.491280 B = 9559.209416 C = 9828.401620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.526 5.526 5 C 0.016 3.984 6 C 0.042 3.958 7 C 0.526 3.474 8 O -0.530 6.530 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.151 4.151 12 C 0.173 3.827 13 H 0.077 0.923 14 N -0.585 5.585 15 C 0.159 3.841 16 C -0.261 4.261 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.904 5.904 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.087 3.913 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.002 0.998 44 H 0.254 0.746 45 H 0.071 0.929 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.374 -8.195 4.011 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.250 5.250 5 C -0.131 4.131 6 C -0.089 4.089 7 C 0.313 3.687 8 O -0.406 6.406 9 N -0.351 5.351 10 C -0.021 4.021 11 C -0.191 4.191 12 C 0.063 3.937 13 H 0.095 0.905 14 N -0.305 5.305 15 C 0.014 3.986 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.038 4.038 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.798 -9.001 3.532 21.139 hybrid contribution 0.561 0.879 0.934 1.400 sum -18.237 -8.122 4.466 20.458 Atomic orbital electron populations 1.21739 0.95638 1.01762 1.01712 1.21540 0.95192 0.96274 1.02967 1.22203 0.86783 0.97574 1.00715 1.61635 1.06993 1.20125 1.36285 1.22612 1.03133 0.99229 0.88155 1.21944 0.93384 0.91142 1.02465 1.20052 0.88597 0.82914 0.77136 1.90656 1.71303 1.27624 1.51043 1.48519 1.10023 1.06388 1.70138 1.22062 0.97398 0.82199 1.00486 1.23205 0.94905 0.98002 1.02982 1.21405 0.86294 0.89551 0.96483 0.90458 1.43804 1.08170 1.76591 1.01955 1.20811 0.97805 0.97586 0.82362 1.19167 0.96831 1.23907 0.99172 0.91328 1.25030 0.99615 0.96671 0.98056 1.70059 1.33630 1.29537 1.21634 0.86306 0.83990 0.77525 0.78530 1.20975 1.21615 1.20878 1.22993 0.78449 1.00996 1.01321 0.92532 0.92924 0.92650 0.90966 0.91849 0.94928 0.90783 0.96285 0.91286 0.89200 0.88148 0.92127 0.92097 0.92034 0.90516 0.90490 0.94770 0.93993 0.97946 0.93600 0.91058 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.12 -1.00 5.87 -26.73 -0.16 -1.16 16 3 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16 4 N -0.53 -6.33 4.50 -244.37 -1.10 -7.43 16 5 C 0.02 0.19 9.01 60.06 0.54 0.74 16 6 C 0.04 0.49 4.64 -4.97 -0.02 0.47 16 7 C 0.53 8.33 7.57 -10.98 -0.08 8.25 16 8 O -0.53 -10.30 14.57 5.56 0.08 -10.22 16 9 N -0.62 -9.71 3.33 -170.52 -0.57 -10.28 16 10 C 0.10 1.33 6.49 -3.06 -0.02 1.32 16 11 C -0.15 -2.45 6.50 -24.89 -0.16 -2.61 16 12 C 0.17 3.41 3.53 -65.79 -0.23 3.18 16 13 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 14 N -0.58 -14.17 2.96 -171.04 -0.51 -14.67 16 15 C 0.16 3.78 7.57 59.84 0.45 4.23 16 16 C -0.26 -7.01 9.60 -15.06 -0.14 -7.16 16 17 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 18 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 19 N -0.90 -25.75 10.77 55.49 0.60 -25.15 16 20 Si 0.91 21.56 29.58 -169.99 -5.03 16.53 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.09 1.61 6.47 -2.54 -0.02 1.60 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.53 6.47 -51.93 -0.34 0.19 16 30 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 32 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.72 6.30 -51.93 -0.33 0.39 16 34 H 0.09 1.31 5.88 -51.93 -0.31 1.01 16 35 H 0.10 1.01 7.93 -51.93 -0.41 0.60 16 36 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.33 6.99 -51.93 -0.36 0.97 16 41 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 42 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 43 H 0.00 0.04 6.38 -51.93 -0.33 -0.29 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 46 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -30.68 356.80 -8.92 -39.59 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -8.19 Total: -2.52 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 0.42 Total: 8.77 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -1.57 Total: -57.53 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.68 -8.92 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193622325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.452 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds