Wall clock time and date at job start Tue Mar 31 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.46873 * 2 1 4 4 C 1.46906 * 111.00051 * 293.95407 * 3 2 1 5 5 C 1.46895 * 111.00163 * 169.99876 * 3 2 1 6 6 C 1.52993 * 109.47356 * 189.99574 * 5 3 2 7 7 C 1.50705 * 109.47269 * 179.97438 * 6 5 3 8 8 O 1.21288 * 119.99774 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00448 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00602 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47422 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.09004 * 109.47483 * 60.00358 * 1 2 3 25 25 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47655 * 300.00096 * 1 2 3 27 27 H 1.08997 * 109.46817 * 240.00196 * 2 1 3 28 28 H 1.08994 * 109.46759 * 119.99558 * 2 1 3 29 29 H 1.09004 * 109.46726 * 296.04927 * 4 3 2 30 30 H 1.08994 * 109.47202 * 56.04407 * 4 3 2 31 31 H 1.09002 * 109.47554 * 176.05133 * 4 3 2 32 32 H 1.09009 * 109.46916 * 69.99633 * 5 3 2 33 33 H 1.08998 * 109.47192 * 310.00556 * 5 3 2 34 34 H 1.08997 * 109.47087 * 60.00588 * 6 5 3 35 35 H 1.08995 * 109.47625 * 299.99865 * 6 5 3 36 36 H 0.97000 * 119.99744 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.46594 * 59.99687 * 10 9 7 38 38 H 1.09002 * 109.46711 * 300.00837 * 10 9 7 39 39 H 1.09004 * 109.46724 * 60.00514 * 11 10 9 40 40 H 1.08991 * 109.47467 * 300.00375 * 11 10 9 41 41 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 42 42 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 43 43 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 44 44 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 45 45 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 46 46 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 -1.2534 5 6 3.4684 1.4312 0.2382 6 6 3.8997 2.8792 0.4790 7 6 5.3860 2.9265 0.7240 8 8 6.0363 1.9029 0.7071 9 7 5.9926 4.1063 0.9618 10 6 7.4374 4.1524 1.1994 11 6 7.8688 5.6004 1.4404 12 7 9.3136 5.6464 1.6785 13 6 9.8015 5.5301 2.9527 14 1 10.7348 5.0159 3.1288 15 6 9.0965 6.0730 4.0182 16 7 8.2300 7.0414 3.8088 17 14 9.3775 5.4292 5.7491 18 1 10.4655 6.2062 6.3955 19 1 8.1289 5.5738 6.5397 20 1 9.7616 3.9961 5.6879 21 6 10.2363 5.8167 0.5535 22 6 11.7354 5.7810 0.8577 23 6 11.0576 7.1067 0.5025 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.1769 1.5790 -2.0860 30 1 0.5919 2.0178 -1.4053 31 1 1.9823 3.1099 -1.1989 32 1 3.9925 1.0359 -0.6321 33 1 3.7121 0.8290 1.1134 34 1 3.3758 3.2744 1.3492 35 1 3.6561 3.4813 -0.3963 36 1 5.4724 4.9249 0.9757 37 1 7.9615 3.7576 0.3290 38 1 7.6811 3.5498 2.0744 39 1 7.3447 5.9955 2.3107 40 1 7.6251 6.2026 0.5652 41 1 7.6962 7.3817 4.5436 42 1 9.9049 5.3933 -0.3946 43 1 12.0350 5.6302 1.8949 44 1 12.3902 5.3343 0.1095 45 1 11.2667 7.5316 -0.4792 46 1 10.9110 7.8287 1.3058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691232650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:46 Heat of formation + Delta-G solvation = 8.769161 kcal Electronic energy + Delta-G solvation = -22361.161151 eV Core-core repulsion = 19094.281384 eV Total energy + Delta-G solvation = -3266.879767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.47138 -37.85031 -37.09567 -34.73507 -33.21206 -32.47155 -30.83635 -29.63884 -27.73068 -26.62079 -24.47116 -23.02309 -21.67393 -21.27388 -20.92902 -20.00119 -19.66396 -17.18466 -16.21709 -16.07733 -15.61887 -15.43057 -15.28794 -15.08303 -14.60986 -14.27859 -14.08450 -13.74821 -13.33507 -13.02388 -12.63568 -12.53118 -12.31093 -12.04615 -11.96630 -11.93170 -11.57007 -11.47303 -11.09855 -11.05448 -10.94851 -10.74623 -10.73170 -10.33802 -10.13450 -9.87103 -9.65962 -9.53496 -9.29218 -8.57653 -8.54759 -8.47075 -6.65580 -5.86868 -3.46704 2.98143 3.31315 3.39216 3.40842 3.45530 3.94406 4.42315 4.73224 4.81462 4.90135 4.96298 5.02137 5.14796 5.23562 5.25794 5.27919 5.31979 5.33565 5.46562 5.59781 5.70364 5.76741 5.84100 5.88218 5.90351 5.99804 6.03061 6.10388 6.19631 6.28556 6.47959 6.52221 6.60289 6.84226 6.85057 6.87802 6.97379 7.05918 7.19513 7.52126 7.74852 7.93979 8.39670 8.60586 9.07034 9.69866 10.24670 11.09727 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.003209 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.807502 B = 8723.574230 C = 9534.653282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.546 5.546 4 C 0.017 3.983 5 C 0.071 3.929 6 C -0.137 4.137 7 C 0.508 3.492 8 O -0.552 6.552 9 N -0.720 5.720 10 C 0.099 3.901 11 C 0.136 3.864 12 N -0.548 5.548 13 C -0.258 4.258 14 H 0.068 0.932 15 C 0.011 3.989 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.031 0.969 41 H 0.255 0.745 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 -7.151 -9.036 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.131 4.131 5 C -0.057 4.057 6 C -0.178 4.178 7 C 0.293 3.707 8 O -0.431 6.431 9 N -0.371 5.371 10 C -0.026 4.026 11 C 0.009 3.991 12 N -0.264 5.264 13 C -0.388 4.388 14 H 0.085 0.915 15 C -0.189 4.189 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.202 1.202 21 C 0.010 3.990 22 C -0.234 4.234 23 C -0.261 4.261 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.231 0.769 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.619 -7.512 -8.509 16.973 hybrid contribution 0.351 -0.190 0.246 0.469 sum -12.268 -7.702 -8.263 16.676 Atomic orbital electron populations 1.21810 0.94885 1.01472 1.02464 1.22077 0.95998 0.88770 1.00969 1.62004 1.14200 1.16017 1.34781 1.22502 1.01352 0.99511 0.89784 1.21808 0.86094 0.95881 1.01873 1.21626 0.92983 0.98837 1.04355 1.20552 0.89645 0.83779 0.76753 1.90683 1.66989 1.33622 1.51782 1.46102 1.10680 1.08791 1.71516 1.22296 0.77491 1.02412 1.00427 1.21102 0.85878 0.90434 1.01667 1.43232 0.99825 1.81577 1.01807 1.19077 1.08386 1.29013 0.82287 0.91476 1.25122 1.00255 0.95150 0.98384 1.70028 1.26986 1.23831 1.31778 0.86407 0.77400 0.79226 0.84455 1.21172 1.21372 1.20173 1.21231 0.88097 0.97708 0.91941 1.23045 0.96377 1.01842 1.02096 1.23362 1.09018 0.92857 1.00873 0.92713 0.92378 0.91787 0.94933 0.90648 0.95655 0.91202 0.91076 0.93990 0.89941 0.88170 0.89205 0.76864 0.93302 0.91655 0.87653 0.95063 0.93490 0.89515 0.88406 0.90687 0.91178 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.84 37.16 0.37 -0.73 16 2 C 0.05 0.45 5.68 -3.82 -0.02 0.43 16 3 N -0.55 -5.60 4.76 -242.92 -1.16 -6.76 16 4 C 0.02 0.14 9.13 60.07 0.55 0.69 16 5 C 0.07 0.86 4.25 -3.83 -0.02 0.84 16 6 C -0.14 -1.61 5.62 -27.88 -0.16 -1.77 16 7 C 0.51 8.20 7.83 -10.99 -0.09 8.12 16 8 O -0.55 -11.16 15.98 5.55 0.09 -11.07 16 9 N -0.72 -11.71 5.56 -60.29 -0.33 -12.04 16 10 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 11 C 0.14 2.97 5.45 -4.04 -0.02 2.95 16 12 N -0.55 -13.15 2.78 -165.66 -0.46 -13.61 16 13 C -0.26 -6.80 8.63 -15.06 -0.13 -6.93 16 14 H 0.07 1.78 6.55 -52.48 -0.34 1.44 16 15 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 16 N -0.88 -24.18 11.33 55.49 0.63 -23.55 16 17 Si 0.90 21.19 29.61 -169.99 -5.03 16.16 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.12 2.52 6.56 -67.93 -0.45 2.07 16 22 C -0.20 -3.84 9.80 -26.69 -0.26 -4.10 16 23 C -0.22 -4.43 10.36 -26.69 -0.28 -4.71 16 24 H 0.05 0.38 6.47 -51.93 -0.34 0.04 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.08 0.69 7.93 -51.93 -0.41 0.27 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.52 6.30 -51.93 -0.33 0.19 16 31 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 32 H 0.04 0.55 8.08 -51.92 -0.42 0.13 16 33 H 0.08 1.08 7.89 -51.93 -0.41 0.67 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.88 6.55 -51.93 -0.34 0.54 16 36 H 0.40 5.41 8.47 -40.82 -0.35 5.06 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.11 2.57 5.35 -51.93 -0.28 2.29 16 40 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 41 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -29.94 367.82 -9.42 -39.36 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.08 Total: 6.94 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.61 Total: -0.97 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.32 Total: -55.96 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.94 -9.42 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691232650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.126 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds