Wall clock time and date at job start Tue Mar 31 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.46873 * 2 1 4 4 C 1.46906 * 111.00051 * 293.95407 * 3 2 1 5 5 C 1.46895 * 111.00163 * 169.99876 * 3 2 1 6 6 C 1.52993 * 109.47356 * 189.99574 * 5 3 2 7 7 C 1.50705 * 109.47269 * 179.97438 * 6 5 3 8 8 O 1.21288 * 119.99774 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00448 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00602 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47422 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47058 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99937 * 270.00095 * 12 11 10 14 14 H 1.08003 * 119.99855 * 144.92770 * 13 12 11 15 15 C 1.38814 * 120.00273 * 324.92932 * 13 12 11 16 16 N 1.31620 * 119.99838 * 337.93463 * 15 13 12 17 17 Si 1.86801 * 120.00091 * 157.93681 * 15 13 12 18 18 H 1.48501 * 109.46754 * 89.99914 * 17 15 13 19 19 H 1.48495 * 109.46949 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47225 * 330.00128 * 17 15 13 21 21 C 1.46494 * 119.99631 * 90.00309 * 12 11 10 22 22 C 1.53008 * 117.49603 * 183.23516 * 21 12 11 23 23 C 1.53005 * 117.50060 * 114.58020 * 21 12 11 24 24 H 1.09004 * 109.47483 * 60.00358 * 1 2 3 25 25 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47655 * 300.00096 * 1 2 3 27 27 H 1.08997 * 109.46817 * 240.00196 * 2 1 3 28 28 H 1.08994 * 109.46759 * 119.99558 * 2 1 3 29 29 H 1.09004 * 109.46726 * 296.04927 * 4 3 2 30 30 H 1.08994 * 109.47202 * 56.04407 * 4 3 2 31 31 H 1.09002 * 109.47554 * 176.05133 * 4 3 2 32 32 H 1.09009 * 109.46916 * 69.99633 * 5 3 2 33 33 H 1.08998 * 109.47192 * 310.00556 * 5 3 2 34 34 H 1.08997 * 109.47087 * 60.00588 * 6 5 3 35 35 H 1.08995 * 109.47625 * 299.99865 * 6 5 3 36 36 H 0.97000 * 119.99744 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.46594 * 59.99687 * 10 9 7 38 38 H 1.09002 * 109.46711 * 300.00837 * 10 9 7 39 39 H 1.09004 * 109.46724 * 60.00514 * 11 10 9 40 40 H 1.08991 * 109.47467 * 300.00375 * 11 10 9 41 41 H 0.96995 * 119.99672 * 176.06957 * 16 15 13 42 42 H 1.08998 * 115.55292 * 328.90743 * 21 12 11 43 43 H 1.09004 * 117.49709 * 0.02562 * 22 21 12 44 44 H 1.09001 * 117.49616 * 145.02232 * 22 21 12 45 45 H 1.08992 * 117.50031 * 214.97936 * 23 21 12 46 46 H 1.09007 * 117.49694 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 -1.2534 5 6 3.4684 1.4312 0.2382 6 6 3.8997 2.8792 0.4790 7 6 5.3860 2.9265 0.7240 8 8 6.0363 1.9029 0.7071 9 7 5.9926 4.1063 0.9618 10 6 7.4374 4.1524 1.1994 11 6 7.8688 5.6004 1.4404 12 7 9.3136 5.6464 1.6785 13 6 9.8015 5.5301 2.9527 14 1 10.7348 5.0159 3.1288 15 6 9.0965 6.0730 4.0182 16 7 8.2300 7.0414 3.8088 17 14 9.3775 5.4292 5.7491 18 1 10.4655 6.2062 6.3955 19 1 8.1289 5.5738 6.5397 20 1 9.7616 3.9961 5.6879 21 6 10.2363 5.8167 0.5535 22 6 11.7354 5.7810 0.8577 23 6 11.0576 7.1067 0.5025 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.1769 1.5790 -2.0860 30 1 0.5919 2.0178 -1.4053 31 1 1.9823 3.1099 -1.1989 32 1 3.9925 1.0359 -0.6321 33 1 3.7121 0.8290 1.1134 34 1 3.3758 3.2744 1.3492 35 1 3.6561 3.4813 -0.3963 36 1 5.4724 4.9249 0.9757 37 1 7.9615 3.7576 0.3290 38 1 7.6811 3.5498 2.0744 39 1 7.3447 5.9955 2.3107 40 1 7.6251 6.2026 0.5652 41 1 7.6962 7.3817 4.5436 42 1 9.9049 5.3933 -0.3946 43 1 12.0350 5.6302 1.8949 44 1 12.3902 5.3343 0.1095 45 1 11.2667 7.5316 -0.4792 46 1 10.9110 7.8287 1.3058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691232650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:45 Heat of formation + Delta-G solvation = -10.846870 kcal Electronic energy + Delta-G solvation = -22362.011765 eV Core-core repulsion = 19094.281384 eV Total energy + Delta-G solvation = -3267.730382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79323 -38.92902 -38.60232 -36.29813 -34.96989 -33.43373 -32.59585 -30.58099 -29.21778 -27.54327 -26.26061 -24.16044 -23.18646 -22.82630 -21.79785 -21.58770 -21.12732 -18.55768 -17.88719 -17.32266 -17.03714 -16.97590 -16.33163 -16.23626 -16.17912 -15.73703 -15.16232 -14.96315 -14.61472 -14.44856 -14.16156 -13.76966 -13.64870 -13.25458 -13.09190 -12.93264 -12.80058 -12.67619 -12.61632 -12.51827 -12.26412 -12.14043 -11.91883 -11.85429 -11.74629 -11.67278 -11.39029 -11.00747 -10.84428 -10.50198 -10.01513 -9.35112 -8.58019 -7.85114 -5.48523 1.41769 1.46252 1.54970 1.67432 2.16778 2.48967 3.00614 3.13372 3.39562 3.57446 3.82829 3.95838 4.12452 4.17972 4.28774 4.31255 4.37174 4.41318 4.51191 4.56314 4.58376 4.62225 4.62605 4.64710 4.81194 4.91575 4.93506 4.94026 5.01429 5.03359 5.04429 5.14366 5.23708 5.32563 5.37681 5.49186 5.53790 5.66492 5.76276 6.02615 6.10832 6.41615 6.64018 7.10911 7.30992 7.80048 8.29135 9.07048 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.003209 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.807502 B = 8723.574230 C = 9534.653282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.549 5.549 4 C 0.014 3.986 5 C 0.077 3.923 6 C -0.122 4.122 7 C 0.506 3.494 8 O -0.596 6.596 9 N -0.713 5.713 10 C 0.121 3.879 11 C 0.144 3.856 12 N -0.566 5.566 13 C -0.263 4.263 14 H 0.058 0.942 15 C -0.031 4.031 16 N -0.907 5.907 17 Si 0.948 3.052 18 H -0.284 1.284 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.098 3.902 22 C -0.186 4.186 23 C -0.211 4.211 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.413 0.587 37 H 0.045 0.955 38 H 0.029 0.971 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.253 0.747 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.863 -7.098 -10.377 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.274 5.274 4 C -0.134 4.134 5 C -0.052 4.052 6 C -0.162 4.162 7 C 0.294 3.706 8 O -0.477 6.477 9 N -0.365 5.365 10 C -0.006 4.006 11 C 0.017 3.983 12 N -0.284 5.284 13 C -0.393 4.393 14 H 0.075 0.925 15 C -0.229 4.229 16 N -0.550 5.550 17 Si 0.776 3.224 18 H -0.210 1.210 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.010 4.010 22 C -0.224 4.224 23 C -0.252 4.252 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.250 0.750 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.129 0.871 43 H 0.093 0.907 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.708 -7.439 -9.865 18.455 hybrid contribution 0.703 -0.227 0.599 0.951 sum -13.006 -7.666 -9.266 17.714 Atomic orbital electron populations 1.21766 0.93340 1.02356 1.02534 1.22163 0.97231 0.88186 1.00693 1.62041 1.12603 1.16832 1.35891 1.22596 1.02285 0.99682 0.88837 1.21671 0.87345 0.95634 1.00550 1.21576 0.89175 0.99281 1.06212 1.21333 0.91340 0.82701 0.75271 1.90667 1.68368 1.35091 1.53586 1.45959 1.09277 1.09908 1.71310 1.21769 0.79785 1.00454 0.98580 1.20968 0.84907 0.91321 1.01108 1.43438 1.01000 1.82029 1.01909 1.19184 1.08052 1.28329 0.83777 0.92455 1.25668 1.00651 0.95607 1.00947 1.70114 1.27863 1.24738 1.32316 0.85604 0.77113 0.78392 0.81298 1.21039 1.21289 1.20431 1.21537 0.88494 0.98885 0.92047 1.23060 0.95950 1.01537 1.01828 1.23268 1.08522 0.92027 1.01367 0.92025 0.91171 0.92228 0.94989 0.91252 0.95843 0.89807 0.90222 0.95395 0.91701 0.86575 0.86358 0.75032 0.93693 0.95234 0.90015 0.93511 0.93725 0.87140 0.90731 0.87198 0.87810 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.84 71.98 0.71 -1.12 16 2 C 0.04 0.76 5.68 86.30 0.49 1.25 16 3 N -0.55 -10.38 4.76 -922.47 -4.39 -14.77 16 4 C 0.01 0.20 9.13 127.69 1.17 1.37 16 5 C 0.08 1.77 4.25 86.30 0.37 2.14 16 6 C -0.12 -2.64 5.62 29.85 0.17 -2.47 16 7 C 0.51 16.00 7.83 87.66 0.69 16.68 16 8 O -0.60 -24.33 15.98 -3.05 -0.05 -24.38 16 9 N -0.71 -22.61 5.56 -463.06 -2.57 -25.19 16 10 C 0.12 4.86 6.00 86.38 0.52 5.38 16 11 C 0.14 6.26 5.45 86.38 0.47 6.73 16 12 N -0.57 -27.26 2.78 -678.03 -1.88 -29.14 16 13 C -0.26 -14.07 8.63 84.03 0.73 -13.35 16 14 H 0.06 3.12 6.55 -2.91 -0.02 3.10 16 15 C -0.03 -1.66 4.96 84.86 0.42 -1.24 16 16 N -0.91 -50.26 11.33 21.65 0.25 -50.01 16 17 Si 0.95 44.22 29.61 68.60 2.03 46.25 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 C 0.10 4.03 6.56 45.00 0.30 4.32 16 22 C -0.19 -7.03 9.80 30.62 0.30 -6.73 16 23 C -0.21 -8.18 10.36 30.62 0.32 -7.86 16 24 H 0.06 0.71 6.47 -2.38 -0.02 0.69 16 25 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 28 H 0.07 1.24 7.93 -2.39 -0.02 1.22 16 29 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 1.02 6.30 -2.39 -0.02 1.00 16 31 H 0.08 1.04 6.47 -2.39 -0.02 1.02 16 32 H 0.03 0.72 8.08 -2.38 -0.02 0.70 16 33 H 0.06 1.71 7.89 -2.39 -0.02 1.69 16 34 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.12 1.93 6.55 -2.39 -0.02 1.91 16 36 H 0.41 10.59 8.47 -92.71 -0.79 9.80 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 4.04 5.35 -2.38 -0.01 4.02 16 40 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 41 H 0.25 13.58 8.32 -92.71 -0.77 12.81 16 42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.07 3.18 6.37 -2.38 -0.02 3.17 16 44 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -65.52 367.82 0.18 -65.34 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.17 Total: 26.79 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 6.63 Total: 5.11 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -8.60 Total: -119.12 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.52 0.18 -65.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691232650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.495 kcal (2) G-P(sol) polarization free energy of solvation -65.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds