Wall clock time and date at job start Tue Mar 31 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00275 * 2 1 4 4 C 1.50695 * 109.47164 * 275.00424 * 3 2 1 5 5 H 1.07998 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00138 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00074 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00155 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46965 * 89.99800 * 8 6 4 10 10 H 1.48498 * 109.47199 * 209.99763 * 8 6 4 11 11 H 1.48502 * 109.47137 * 330.00186 * 8 6 4 12 12 S 1.65601 * 119.99929 * 180.02562 * 2 1 3 13 13 O 1.42096 * 106.40297 * 336.45805 * 12 2 1 14 14 O 1.42104 * 106.39958 * 203.54066 * 12 2 1 15 15 N 1.65601 * 107.21883 * 90.00121 * 12 2 1 16 16 C 1.46503 * 119.99708 * 275.98114 * 15 12 2 17 17 C 1.39672 * 119.99803 * 95.97826 * 15 12 2 18 18 C 1.38913 * 120.07390 * 59.48985 * 17 15 12 19 19 C 1.38101 * 119.92373 * 179.97438 * 18 17 15 20 20 C 1.38288 * 120.07808 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.14482 * 0.28029 * 20 19 18 22 22 C 1.38105 * 120.07518 * 359.44613 * 21 20 19 23 23 H 1.09004 * 109.47580 * 270.00054 * 1 2 3 24 24 H 1.08999 * 109.46998 * 30.00055 * 1 2 3 25 25 H 1.09000 * 109.47114 * 149.99964 * 1 2 3 26 26 H 1.09005 * 109.47108 * 34.99849 * 3 2 1 27 27 H 1.08995 * 109.47470 * 154.99570 * 3 2 1 28 28 H 0.96994 * 120.00470 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46710 * 269.99866 * 16 15 12 30 30 H 1.08998 * 109.46992 * 30.00029 * 16 15 12 31 31 H 1.09001 * 109.46868 * 150.00480 * 16 15 12 32 32 H 1.08002 * 120.03886 * 0.02562 * 18 17 15 33 33 H 1.07998 * 119.96523 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.93031 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.95758 * 179.69388 * 21 20 19 36 36 H 1.08004 * 120.03679 * 180.27511 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2332 6 6 2.9997 2.9509 -1.6663 7 7 3.5017 3.6479 -0.6705 8 14 3.1787 3.5666 -3.4208 9 1 2.0178 4.4266 -3.7644 10 1 4.4316 4.3541 -3.5437 11 1 3.2287 2.4086 -4.3491 12 16 2.2929 -1.4342 -0.0006 13 8 1.4113 -2.4067 0.5434 14 8 3.5759 -1.1570 0.5440 15 7 2.5381 -1.8580 -1.5826 16 6 1.4905 -2.5670 -2.3217 17 6 3.7435 -1.5394 -2.2122 18 6 4.9425 -2.0261 -1.7070 19 6 6.1325 -1.7096 -2.3323 20 6 6.1314 -0.9096 -3.4603 21 6 4.9400 -0.4192 -3.9627 22 6 3.7459 -0.7364 -3.3457 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6501 2.0043 0.5894 27 1 3.1857 1.1177 0.4343 28 1 3.9645 4.4818 -0.8469 29 1 1.6262 -3.6420 -2.2028 30 1 0.5136 -2.2789 -1.9336 31 1 1.5526 -2.3076 -3.3786 32 1 4.9440 -2.6519 -0.8268 33 1 7.0650 -2.0879 -1.9404 34 1 7.0634 -0.6633 -3.9471 35 1 4.9431 0.2093 -4.8410 36 1 2.8154 -0.3567 -3.7412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032804228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:05 Heat of formation + Delta-G solvation = -38.174317 kcal Electronic energy + Delta-G solvation = -21710.216409 eV Core-core repulsion = 18514.669040 eV Total energy + Delta-G solvation = -3195.547369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.04935 -36.73359 -35.53257 -35.42003 -35.26620 -32.47461 -30.52790 -29.52907 -27.79573 -25.91156 -25.06369 -22.43425 -22.29438 -21.54887 -18.69512 -17.45508 -16.87268 -16.75147 -16.30036 -15.70361 -15.08559 -14.74219 -14.43770 -13.81690 -13.48312 -13.35016 -13.28701 -13.01216 -12.61259 -12.43461 -12.24443 -12.10406 -11.73139 -11.63122 -11.47643 -11.18733 -11.12959 -10.97524 -10.88974 -10.67124 -10.52650 -10.09779 -9.79012 -9.38599 -8.48449 -8.47179 -8.16482 -7.89055 -6.09305 -4.14843 1.08023 1.79163 1.85551 3.23939 3.29742 3.32234 3.37785 4.02921 4.18294 4.37192 4.88832 5.07454 5.25817 5.33037 5.35251 5.47117 5.53461 5.63044 5.76431 5.80548 5.87400 5.99662 6.02832 6.17422 6.24086 6.43106 6.50957 6.71424 6.91158 6.96169 6.98317 7.30743 7.41173 7.51147 7.63686 7.86588 8.15811 8.87809 9.50430 10.99220 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.010548 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.332363 B = 2653.881289 C = 3852.302570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.993 5.993 3 C 0.244 3.756 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.890 5.890 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.269 1.269 12 S 2.780 3.220 13 O -0.994 6.994 14 O -0.964 6.964 15 N -0.960 5.960 16 C 0.098 3.902 17 C 0.157 3.843 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.112 4.112 22 C -0.095 4.095 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -9.866 -5.630 11.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.836 5.836 3 C 0.122 3.878 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.194 1.194 12 S 2.790 3.210 13 O -0.978 6.978 14 O -0.948 6.948 15 N -0.790 5.790 16 C -0.047 4.047 17 C 0.063 3.937 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.144 4.144 21 C -0.130 4.130 22 C -0.116 4.116 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.791 -10.209 -4.777 11.299 hybrid contribution -0.101 0.943 -1.312 1.619 sum -0.892 -9.266 -6.089 11.124 Atomic orbital electron populations 1.21269 0.80095 1.02056 1.00783 1.57667 1.14194 1.23480 1.88229 1.19246 0.92155 0.78619 0.97744 1.21471 1.36431 1.06613 0.92690 0.92038 1.24900 0.95149 0.96548 0.97001 1.69924 1.36932 1.15108 1.30869 0.86649 0.77561 0.79043 0.85129 1.20842 1.21131 1.19389 1.02126 0.73306 0.72826 0.72791 1.93543 1.67437 1.60361 1.76439 1.93599 1.40339 1.85056 1.75848 1.55788 1.20955 1.69740 1.32526 1.21495 0.89126 0.96264 0.97791 1.17197 0.84492 0.97075 0.94964 1.21204 0.91978 1.00005 0.99946 1.20873 0.97263 0.99123 0.95838 1.21072 0.97798 0.98606 0.96944 1.20950 0.92272 0.99518 1.00295 1.21138 0.98775 0.95674 0.96045 0.93585 0.90653 0.93019 0.94388 0.93102 0.92667 0.92399 0.91270 0.90947 0.86053 0.86067 0.86402 0.86319 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.31 59.84 0.62 2.41 16 2 N -0.99 -20.89 3.23 -123.06 -0.40 -21.29 16 3 C 0.24 6.13 5.41 -5.20 -0.03 6.11 16 4 C -0.53 -13.82 9.38 -34.44 -0.32 -14.14 16 5 H 0.06 1.53 7.47 -52.49 -0.39 1.14 16 6 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 S 2.78 57.14 5.93 -107.50 -0.64 56.50 16 13 O -0.99 -20.57 16.50 -57.17 -0.94 -21.51 16 14 O -0.96 -22.68 14.27 -57.17 -0.82 -23.50 16 15 N -0.96 -17.09 3.30 -65.39 -0.22 -17.31 16 16 C 0.10 1.34 10.22 59.85 0.61 1.95 16 17 C 0.16 2.90 5.28 -83.79 -0.44 2.45 16 18 C -0.11 -1.97 8.60 -39.38 -0.34 -2.31 16 19 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 20 C -0.13 -1.92 10.04 -39.54 -0.40 -2.32 16 21 C -0.11 -1.85 10.04 -39.61 -0.40 -2.24 16 22 C -0.10 -1.71 9.25 -39.38 -0.36 -2.07 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.26 8.07 -51.93 -0.42 0.85 16 25 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 26 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 31 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 32 H 0.12 2.11 7.49 -52.49 -0.39 1.72 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.17 7.73 -52.48 -0.41 1.77 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -31.82 317.47 -8.82 -40.65 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.76 Total: 1.61 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.56 Total: -10.63 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.12 Total: -63.40 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.76 Total: -45.02 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 57.14 SS G_CDS: -0.64 Total: 56.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.82 -8.82 -40.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032804228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.473 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds