Wall clock time and date at job start Tue Mar 31 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99768 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47238 * 60.00017 * 10 8 6 12 12 H 1.48494 * 109.47094 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46981 * 299.99863 * 10 8 6 14 14 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 15 15 C 1.38257 * 119.99965 * 79.72689 * 14 2 1 16 16 C 1.38210 * 119.99954 * 179.76915 * 15 14 2 17 17 C 1.38251 * 119.99955 * 0.48043 * 16 15 14 18 18 C 1.38214 * 120.00151 * 359.79800 * 17 16 15 19 19 S 1.76200 * 120.00143 * 179.97438 * 18 17 16 20 20 N 1.65601 * 107.21680 * 269.97374 * 19 18 17 21 21 O 1.42096 * 106.40351 * 23.51558 * 19 18 17 22 22 O 1.42104 * 106.40168 * 156.43675 * 19 18 17 23 23 C 1.38208 * 119.99789 * 260.00392 * 14 2 1 24 24 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 26 26 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 27 27 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 28 28 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 29 29 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 30 30 H 0.96997 * 120.00560 * 179.97438 * 9 8 6 31 31 H 1.07998 * 119.99901 * 0.02562 * 15 14 2 32 32 H 1.07997 * 120.00012 * 180.25797 * 16 15 14 33 33 H 1.08001 * 120.00182 * 179.77018 * 17 16 15 34 34 H 0.97003 * 119.99629 * 150.00166 * 20 19 18 35 35 H 0.96994 * 119.99915 * 330.00213 * 20 19 18 36 36 H 1.07999 * 120.00382 * 359.97438 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 1 2.8381 -1.5693 -3.4795 8 6 2.7318 0.1355 -4.7595 9 7 2.4264 1.4113 -4.8528 10 14 3.3584 -0.7869 -6.2582 11 1 2.4372 -1.9093 -6.5695 12 1 3.4219 0.1382 -7.4180 13 1 4.7147 -1.3227 -5.9782 14 6 2.0324 -0.7105 1.2304 15 6 2.0615 -2.0922 1.2674 16 6 2.5268 -2.7437 2.3940 17 6 2.9537 -2.0138 3.4878 18 6 2.9192 -0.6326 3.4531 19 16 3.4627 0.2976 4.8473 20 7 2.1451 0.5351 5.8219 21 8 4.3501 -0.5443 5.5703 22 8 3.8338 1.5781 4.3554 23 6 2.4586 0.0193 2.3240 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.4496 -1.4979 -1.4101 28 1 1.0870 0.6163 -2.5525 29 1 2.7588 1.0464 -2.1182 30 1 2.5275 1.8736 -5.6995 31 1 1.7246 -2.6624 0.4143 32 1 2.5535 -3.8230 2.4213 33 1 3.3138 -2.5230 4.3696 34 1 2.2603 0.6178 6.7816 35 1 1.2582 0.5915 5.4332 36 1 2.4321 1.0986 2.2967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035046475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:46 Heat of formation + Delta-G solvation = -85.117777 kcal Electronic energy + Delta-G solvation = -19800.325185 eV Core-core repulsion = 16602.742195 eV Total energy + Delta-G solvation = -3197.582990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58683 -38.24501 -37.68409 -36.91959 -34.97151 -34.03383 -32.59633 -32.22753 -30.14926 -27.96552 -24.97231 -24.47120 -23.28687 -22.01892 -20.34680 -19.13761 -18.38099 -18.27850 -17.65801 -17.13502 -16.72070 -16.43804 -15.99573 -15.89007 -15.35274 -15.03432 -14.67621 -14.36633 -14.05294 -13.57904 -13.44737 -13.26805 -13.22334 -13.17561 -13.14431 -13.04175 -12.71641 -12.57121 -12.47551 -12.09870 -11.80629 -11.75507 -11.35117 -11.22902 -10.67137 -10.31107 -9.83084 -9.12517 -8.22877 -6.34049 -0.58156 -0.14945 0.32040 1.40833 1.44268 1.52062 2.19976 2.39220 2.47943 2.81454 3.10739 3.33270 3.66121 3.82679 3.91680 4.09625 4.14915 4.28856 4.34826 4.51114 4.65454 4.82089 4.88296 4.96063 5.03634 5.09607 5.20621 5.28586 5.29169 5.37453 5.50137 5.63104 5.88570 6.01514 6.38149 6.42472 6.70428 6.88607 7.36880 8.88283 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.003444 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.850887 B = 8127.561373 C = 8256.815954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 H 0.064 0.936 4 N -0.680 5.680 5 C 0.211 3.789 6 C -0.536 4.536 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.972 3.028 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.089 4.089 15 C -0.047 4.047 16 C -0.138 4.138 17 C -0.030 4.030 18 C -0.676 4.676 19 S 2.731 3.269 20 N -1.230 6.230 21 O -0.991 6.991 22 O -1.001 7.001 23 C -0.036 4.036 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.338 0.662 28 H -0.030 1.030 29 H -0.006 1.006 30 H 0.265 0.735 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.431 0.569 35 H 0.429 0.571 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -6.806 21.673 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 H 0.083 0.917 4 N -0.311 5.311 5 C 0.083 3.917 6 C -0.575 4.575 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.796 3.204 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.090 4.090 15 C -0.066 4.066 16 C -0.156 4.156 17 C -0.049 4.049 18 C -0.764 4.764 19 S 2.820 3.180 20 N -0.909 5.909 21 O -0.981 6.981 22 O -0.990 6.990 23 C -0.056 4.056 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.157 0.843 28 H -0.013 1.013 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.264 0.736 35 H 0.259 0.741 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.718 -6.291 21.757 22.951 hybrid contribution -1.351 -0.027 -1.635 2.121 sum -5.069 -6.318 20.122 21.691 Atomic orbital electron populations 1.22369 0.94792 1.02936 1.02296 1.20505 0.93997 0.96725 0.88644 0.91743 1.60621 1.56363 1.10135 1.03956 1.19194 0.93251 0.91450 0.87789 1.21519 1.44002 0.97294 0.94648 0.91644 1.25933 0.95571 0.95761 1.02371 1.70078 1.49606 1.10694 1.27010 0.85403 0.79074 0.78265 0.77655 1.18851 1.20939 1.19583 1.19996 0.99738 0.94799 0.94479 1.21506 0.93514 0.93747 0.97825 1.21615 0.99391 1.01858 0.92747 1.21206 0.92566 0.91417 0.99687 1.30511 1.20183 1.07605 1.18062 1.00410 0.72498 0.72705 0.72398 1.52691 1.24543 1.92498 1.21187 1.93545 1.63534 1.68936 1.72050 1.93584 1.81770 1.42135 1.81501 1.20883 0.92703 1.00404 0.91570 0.91132 0.90294 0.93824 0.84348 1.01272 0.98752 0.92641 0.84627 0.82148 0.82219 0.73633 0.74082 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.14 71.98 0.66 -3.97 16 2 C 0.11 3.77 2.79 44.17 0.12 3.89 16 3 H 0.06 2.41 7.66 -2.39 -0.02 2.39 16 4 N -0.68 -27.98 5.70 -499.44 -2.85 -30.83 16 5 C 0.21 11.11 5.24 85.56 0.45 11.56 16 6 C -0.54 -30.25 9.32 25.60 0.24 -30.01 16 7 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 10 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 C -0.09 -2.53 4.95 -19.87 -0.10 -2.63 16 15 C -0.05 -1.18 9.32 22.27 0.21 -0.97 16 16 C -0.14 -2.73 10.05 22.27 0.22 -2.50 16 17 C -0.03 -0.58 9.52 22.27 0.21 -0.37 16 18 C -0.68 -14.89 5.97 22.27 0.13 -14.76 16 19 S 2.73 54.39 6.28 -56.49 -0.35 54.03 16 20 N -1.23 -12.19 9.52 37.02 0.35 -11.84 16 21 O -0.99 -24.45 17.28 -128.00 -2.21 -26.67 16 22 O -1.00 -28.37 17.28 -128.00 -2.21 -30.59 16 23 C -0.04 -0.94 9.15 22.27 0.20 -0.74 16 24 H 0.07 1.74 8.13 -2.38 -0.02 1.72 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.40 7.45 -2.39 -0.02 1.39 16 27 H 0.34 12.74 7.82 -89.70 -0.70 12.04 16 28 H -0.03 -1.69 7.43 -2.39 -0.02 -1.71 16 29 H -0.01 -0.33 8.06 -2.38 -0.02 -0.35 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.14 3.19 7.26 -2.91 -0.02 3.17 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.16 2.39 7.62 -2.91 -0.02 2.36 16 34 H 0.43 2.53 8.96 -96.74 -0.87 1.67 16 35 H 0.43 2.44 8.96 -96.75 -0.87 1.57 16 36 H 0.14 3.51 7.60 -2.91 -0.02 3.49 16 Total: -1.00 -76.69 320.39 -3.46 -80.15 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -1.31 Total: 15.66 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 2.81 Total: -39.94 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -2.21 Total: -98.75 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -4.42 Total: -57.25 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 54.39 SS G_CDS: -0.35 Total: 54.03 kcal Total: -76.69 -3.46 -80.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035046475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds