Wall clock time and date at job start Tue Mar 31 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47384 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47235 * 299.99977 * 3 2 1 6 6 H 1.48497 * 109.47317 * 59.99766 * 3 2 1 7 7 C 1.40055 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.39744 * 119.99719 * 359.97438 * 7 2 1 10 10 O 1.22104 * 119.99701 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00215 * 180.02562 * 9 7 2 12 12 N 1.40089 * 120.00190 * 179.97438 * 11 9 7 13 13 C 1.31244 * 120.00252 * 179.97438 * 12 11 9 14 14 C 1.41401 * 120.00294 * 180.02562 * 13 12 11 15 15 C 1.40983 * 120.78580 * 359.97438 * 14 13 12 16 16 O 1.35455 * 119.87749 * 0.02822 * 15 14 13 17 17 C 1.39099 * 120.25222 * 179.74608 * 15 14 13 18 18 C 1.36179 * 121.83213 * 0.25578 * 17 15 14 19 19 C 1.40898 * 120.98821 * 0.02562 * 18 17 15 20 20 C 1.40342 * 121.10256 * 180.02562 * 19 18 17 21 21 C 1.36537 * 119.81646 * 179.97438 * 20 19 18 22 22 C 1.38964 * 120.95032 * 0.03706 * 21 20 19 23 23 C 1.37768 * 120.67706 * 359.96190 * 22 21 20 24 24 C 1.39706 * 119.53330 * 0.02562 * 23 22 21 25 25 H 0.97000 * 120.00313 * 359.97438 * 1 2 3 26 26 H 0.97008 * 119.99615 * 0.02562 * 11 9 7 27 27 H 1.07994 * 119.99486 * 0.02562 * 13 12 11 28 28 H 0.96696 * 113.99987 * 269.72083 * 16 15 14 29 29 H 1.07997 * 119.08529 * 180.23647 * 17 15 14 30 30 H 1.07997 * 119.51066 * 179.97438 * 18 17 15 31 31 H 1.07999 * 120.09408 * 359.95425 * 20 19 18 32 32 H 1.08004 * 119.52258 * 180.02562 * 21 20 19 33 33 H 1.07996 * 119.66138 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.23496 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3965 1.2124 7 6 2.0072 -1.2129 -0.0005 8 1 3.0871 -1.2129 -0.0001 9 6 1.3084 -2.4231 -0.0005 10 8 0.0874 -2.4230 0.0004 11 7 1.9823 -3.5903 -0.0005 12 7 1.2818 -4.8035 0.0000 13 6 1.9379 -5.9402 -0.0005 14 6 1.2309 -7.1647 -0.0005 15 6 -0.1788 -7.1840 0.0006 16 8 -0.8696 -6.0189 0.0011 17 6 -0.8630 -8.3951 -0.0048 18 6 -0.2091 -9.5895 -0.0060 19 6 1.1988 -9.6458 -0.0013 20 6 1.8752 -10.8755 -0.0031 21 6 3.2404 -10.8993 0.0011 22 6 3.9758 -9.7203 0.0078 23 6 3.3424 -8.4968 0.0097 24 6 1.9463 -8.4441 0.0053 25 1 -0.4850 0.8400 0.0004 26 1 2.9523 -3.5903 -0.0002 27 1 3.0179 -5.9401 -0.0009 28 1 -1.0732 -5.6827 0.8845 29 1 -1.9430 -8.3879 -0.0077 30 1 -0.7780 -10.5075 -0.0097 31 1 1.3175 -11.8003 -0.0073 32 1 3.7560 -11.8483 -0.0007 33 1 5.0548 -9.7634 0.0114 34 1 3.9210 -7.5849 0.0145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059465336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:50 Heat of formation + Delta-G solvation = 14.450362 kcal Electronic energy + Delta-G solvation = -20661.664271 eV Core-core repulsion = 17332.954928 eV Total energy + Delta-G solvation = -3328.709343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.095 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20979 -37.98284 -37.49020 -35.30574 -34.88800 -33.02217 -32.41886 -30.57756 -29.73251 -28.29839 -26.53636 -23.89363 -23.05051 -22.50479 -20.43821 -19.63188 -18.37352 -17.70044 -17.27263 -16.61641 -15.67934 -15.60521 -15.40547 -14.48180 -14.40071 -14.03092 -13.68960 -13.42263 -13.39784 -13.12010 -12.92873 -12.65429 -12.35348 -11.55877 -11.44501 -11.29629 -11.10220 -11.02725 -10.79295 -10.68049 -10.38964 -10.30060 -9.71062 -9.27467 -9.02195 -8.44486 -8.20872 -7.76115 -6.93935 -6.42088 -4.98924 0.35300 1.06558 1.73142 2.75291 3.01578 3.09529 3.14607 3.25501 3.70102 4.06400 4.15424 4.42020 4.51250 4.68401 4.84561 4.90151 5.04679 5.12685 5.26218 5.33067 5.43547 5.75833 5.76514 5.84181 5.89489 6.09851 6.18053 6.25721 6.42487 6.48979 6.59675 6.70860 6.90296 6.95967 7.17829 7.83496 7.95009 8.22072 8.63881 8.73524 9.27169 10.35902 10.63330 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.031753 B = 0.003509 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.606283 B = 7978.429265 C = 8847.587628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.087 3.913 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.555 3.445 10 O -0.549 6.549 11 N -0.585 5.585 12 N -0.149 5.149 13 C -0.002 4.002 14 C -0.041 4.041 15 C 0.128 3.872 16 O -0.464 6.464 17 C -0.129 4.129 18 C -0.105 4.105 19 C -0.056 4.056 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.104 4.104 24 C -0.026 4.026 25 H 0.274 0.726 26 H 0.367 0.633 27 H 0.105 0.895 28 H 0.392 0.608 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -18.244 1.677 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.364 3.636 10 O -0.429 6.429 11 N -0.331 5.331 12 N 0.037 4.963 13 C -0.206 4.206 14 C -0.044 4.044 15 C 0.077 3.923 16 O -0.274 6.274 17 C -0.148 4.148 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.028 4.028 25 H 0.085 0.915 26 H 0.203 0.797 27 H 0.122 0.878 28 H 0.250 0.750 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.690 -17.481 1.077 17.898 hybrid contribution 1.886 0.598 0.439 2.027 sum 5.575 -16.882 1.516 17.844 Atomic orbital electron populations 1.70066 1.07314 1.27970 1.31423 1.25755 0.94699 1.00739 0.92467 0.86158 0.80431 0.80790 0.78527 1.18522 1.19806 1.19812 1.19584 0.94616 0.89890 1.53006 0.91119 1.16562 0.87986 0.80301 0.78760 1.90773 1.13164 1.85195 1.53719 1.48318 1.07519 1.02372 1.74854 1.75411 1.26386 0.92450 1.02026 1.22577 0.96933 0.90910 1.10170 1.18975 0.92151 0.90651 1.02585 1.18860 0.88755 0.86199 0.98450 1.84795 1.74018 1.35558 1.33048 1.21026 1.00696 0.91795 1.01240 1.20866 0.92763 0.97679 1.01155 1.17927 0.93440 0.92603 1.01689 1.21015 0.94549 0.96485 1.00197 1.20796 0.94159 0.98166 1.01185 1.21119 0.99828 0.92229 1.00663 1.21218 0.93161 0.98219 0.99608 1.18731 0.92994 0.91059 0.99990 0.91499 0.79747 0.87825 0.74974 0.85429 0.85643 0.85774 0.86251 0.86034 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.53 11.68 55.55 0.65 -20.88 16 2 C 0.09 2.35 5.49 -17.36 -0.10 2.26 16 3 Si 0.92 19.24 29.56 -169.99 -5.02 14.22 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.53 -14.72 9.20 -38.34 -0.35 -15.07 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 16.06 7.62 -15.70 -0.12 15.94 16 10 O -0.55 -18.15 15.17 4.82 0.07 -18.07 16 11 N -0.58 -14.02 6.26 28.74 0.18 -13.84 16 12 N -0.15 -3.37 8.84 31.02 0.27 -3.10 16 13 C 0.00 -0.04 10.21 -16.60 -0.17 -0.21 16 14 C -0.04 -0.68 5.94 -104.29 -0.62 -1.30 16 15 C 0.13 2.14 6.74 -38.22 -0.26 1.88 16 16 O -0.46 -8.85 11.28 -18.06 -0.20 -9.06 16 17 C -0.13 -1.73 9.81 -40.00 -0.39 -2.12 16 18 C -0.10 -1.23 9.71 -39.32 -0.38 -1.61 16 19 C -0.06 -0.72 5.74 -106.85 -0.61 -1.33 16 20 C -0.10 -1.07 9.76 -39.40 -0.38 -1.45 16 21 C -0.13 -1.19 9.95 -39.93 -0.40 -1.59 16 22 C -0.12 -1.22 10.02 -39.48 -0.40 -1.62 16 23 C -0.10 -1.27 9.49 -39.21 -0.37 -1.64 16 24 C -0.03 -0.36 5.90 -104.73 -0.62 -0.98 16 25 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 26 H 0.37 7.43 8.62 -182.60 -1.57 5.85 16 27 H 0.10 1.59 6.39 -52.49 -0.34 1.26 16 28 H 0.39 6.54 9.06 45.56 0.41 6.95 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.41 6.41 -52.49 -0.34 1.07 16 LS Contribution 306.60 15.07 4.62 4.62 Total: -1.00 -35.78 306.60 -8.09 -43.87 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -3.49 Total: 11.10 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -5.17 Total: -8.86 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 1.10 Total: -37.82 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.13 Total: -27.13 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.78 -8.09 -43.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059465336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.323 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds