Wall clock time and date at job start Tue Mar 31 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47384 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47235 * 299.99977 * 3 2 1 6 6 H 1.48497 * 109.47317 * 59.99766 * 3 2 1 7 7 C 1.40055 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.39744 * 119.99719 * 359.97438 * 7 2 1 10 10 O 1.22104 * 119.99701 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00215 * 180.02562 * 9 7 2 12 12 N 1.40089 * 120.00190 * 179.97438 * 11 9 7 13 13 C 1.31244 * 120.00252 * 179.97438 * 12 11 9 14 14 C 1.41401 * 120.00294 * 180.02562 * 13 12 11 15 15 C 1.40983 * 120.78580 * 359.97438 * 14 13 12 16 16 O 1.35455 * 119.87749 * 0.02822 * 15 14 13 17 17 C 1.39099 * 120.25222 * 179.74608 * 15 14 13 18 18 C 1.36179 * 121.83213 * 0.25578 * 17 15 14 19 19 C 1.40898 * 120.98821 * 0.02562 * 18 17 15 20 20 C 1.40342 * 121.10256 * 180.02562 * 19 18 17 21 21 C 1.36537 * 119.81646 * 179.97438 * 20 19 18 22 22 C 1.38964 * 120.95032 * 0.03706 * 21 20 19 23 23 C 1.37768 * 120.67706 * 359.96190 * 22 21 20 24 24 C 1.39706 * 119.53330 * 0.02562 * 23 22 21 25 25 H 0.97000 * 120.00313 * 359.97438 * 1 2 3 26 26 H 0.97008 * 119.99615 * 0.02562 * 11 9 7 27 27 H 1.07994 * 119.99486 * 0.02562 * 13 12 11 28 28 H 0.96696 * 113.99987 * 269.72083 * 16 15 14 29 29 H 1.07997 * 119.08529 * 180.23647 * 17 15 14 30 30 H 1.07997 * 119.51066 * 179.97438 * 18 17 15 31 31 H 1.07999 * 120.09408 * 359.95425 * 20 19 18 32 32 H 1.08004 * 119.52258 * 180.02562 * 21 20 19 33 33 H 1.07996 * 119.66138 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.23496 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8822 2.3965 1.2124 7 6 2.0072 -1.2129 -0.0005 8 1 3.0871 -1.2129 -0.0001 9 6 1.3084 -2.4231 -0.0005 10 8 0.0874 -2.4230 0.0004 11 7 1.9823 -3.5903 -0.0005 12 7 1.2818 -4.8035 0.0000 13 6 1.9379 -5.9402 -0.0005 14 6 1.2309 -7.1647 -0.0005 15 6 -0.1788 -7.1840 0.0006 16 8 -0.8696 -6.0189 0.0011 17 6 -0.8630 -8.3951 -0.0048 18 6 -0.2091 -9.5895 -0.0060 19 6 1.1988 -9.6458 -0.0013 20 6 1.8752 -10.8755 -0.0031 21 6 3.2404 -10.8993 0.0011 22 6 3.9758 -9.7203 0.0078 23 6 3.3424 -8.4968 0.0097 24 6 1.9463 -8.4441 0.0053 25 1 -0.4850 0.8400 0.0004 26 1 2.9523 -3.5903 -0.0002 27 1 3.0179 -5.9401 -0.0009 28 1 -1.0732 -5.6827 0.8845 29 1 -1.9430 -8.3879 -0.0077 30 1 -0.7780 -10.5075 -0.0097 31 1 1.3175 -11.8003 -0.0073 32 1 3.7560 -11.8483 -0.0007 33 1 5.0548 -9.7634 0.0114 34 1 3.9210 -7.5849 0.0145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059465336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:49 Heat of formation + Delta-G solvation = -12.317324 kcal Electronic energy + Delta-G solvation = -20662.825005 eV Core-core repulsion = 17332.954928 eV Total energy + Delta-G solvation = -3329.870077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.095 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25741 -39.61308 -39.00675 -37.01206 -35.97075 -34.79393 -34.06590 -32.00410 -30.74459 -29.67878 -28.33965 -25.21033 -24.04827 -23.55259 -22.18136 -21.09368 -19.58133 -19.46295 -18.50687 -17.91908 -17.57615 -16.88556 -16.55503 -15.95603 -15.57062 -15.30628 -15.14368 -14.84633 -14.71034 -14.36916 -14.33400 -13.87430 -13.37332 -13.24400 -13.21935 -12.74983 -12.72271 -12.28231 -11.99442 -11.95183 -11.83501 -11.64968 -11.07459 -10.83906 -10.70972 -9.95869 -9.62458 -9.43282 -8.43515 -8.35450 -7.11830 -0.72558 0.08329 0.66935 1.37246 1.38173 1.58097 1.61435 2.06284 2.10243 2.34633 2.43318 3.13890 3.33358 3.65569 3.76676 3.79223 3.91570 3.99692 4.21139 4.35689 4.43875 4.55709 4.59608 4.73722 4.94151 5.11618 5.14738 5.19558 5.23666 5.32772 5.48336 5.63525 5.64308 5.80350 5.84803 6.01209 6.08621 6.66001 6.88192 6.93435 7.42805 8.39930 8.58890 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.031753 B = 0.003509 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.606283 B = 7978.429265 C = 8847.587628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.029 3.971 3 Si 1.011 2.989 4 H -0.244 1.244 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.543 3.457 10 O -0.611 6.611 11 N -0.596 5.596 12 N -0.223 5.223 13 C 0.047 3.953 14 C -0.094 4.094 15 C 0.124 3.876 16 O -0.492 6.492 17 C -0.157 4.157 18 C -0.066 4.066 19 C -0.082 4.082 20 C -0.095 4.095 21 C -0.126 4.126 22 C -0.103 4.103 23 C -0.135 4.135 24 C -0.029 4.029 25 H 0.282 0.718 26 H 0.380 0.620 27 H 0.129 0.871 28 H 0.394 0.606 29 H 0.144 0.856 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -21.600 1.695 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.167 1.167 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.111 0.889 9 C 0.353 3.647 10 O -0.496 6.496 11 N -0.341 5.341 12 N -0.032 5.032 13 C -0.158 4.158 14 C -0.097 4.097 15 C 0.074 3.926 16 O -0.303 6.303 17 C -0.175 4.175 18 C -0.085 4.085 19 C -0.082 4.082 20 C -0.113 4.113 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.153 4.153 24 C -0.031 4.031 25 H 0.092 0.908 26 H 0.218 0.782 27 H 0.146 0.854 28 H 0.253 0.747 29 H 0.162 0.838 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.114 -20.893 1.097 21.797 hybrid contribution 1.232 1.026 0.438 1.662 sum 7.346 -19.867 1.535 21.237 Atomic orbital electron populations 1.70231 1.09915 1.29715 1.32634 1.27141 0.95575 1.05387 0.90850 0.84791 0.79259 0.74229 0.78874 1.16656 1.19017 1.18827 1.20129 0.95845 0.90339 1.53354 0.88873 1.16936 0.87535 0.82082 0.78159 1.90702 1.15482 1.86681 1.56698 1.47534 1.07732 1.02355 1.76485 1.75519 1.27029 0.92661 1.08017 1.23163 0.98399 0.90525 1.03761 1.19142 0.92464 0.91157 1.06900 1.19382 0.89232 0.86484 0.97544 1.84748 1.74624 1.37300 1.33662 1.21145 1.01623 0.91179 1.03557 1.21396 0.92835 0.98378 0.95913 1.18299 0.94005 0.93174 1.02757 1.21433 0.95207 0.96515 0.98109 1.21276 0.94165 0.99340 0.99593 1.21556 1.01470 0.91597 0.97429 1.21367 0.92509 0.99634 1.01816 1.18893 0.94016 0.90444 0.99791 0.90818 0.78239 0.85389 0.74671 0.83839 0.81395 0.82269 0.82689 0.83256 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.80 11.68 21.84 0.26 -48.54 16 2 C 0.03 1.62 5.49 85.30 0.47 2.09 16 3 Si 1.01 39.99 29.56 68.60 2.03 42.02 16 4 H -0.24 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.56 -32.18 9.20 23.08 0.21 -31.96 16 8 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 9 C 0.54 33.59 7.62 84.61 0.64 34.23 16 10 O -0.61 -43.60 15.17 -5.65 -0.09 -43.68 16 11 N -0.60 -30.53 6.26 -181.04 -1.13 -31.67 16 12 N -0.22 -10.80 8.84 -55.78 -0.49 -11.30 16 13 C 0.05 1.79 10.21 85.56 0.87 2.66 16 14 C -0.09 -3.21 5.94 -19.65 -0.12 -3.33 16 15 C 0.12 4.31 6.74 23.15 0.16 4.46 16 16 O -0.49 -20.47 11.28 -87.52 -0.99 -21.46 16 17 C -0.16 -4.08 9.81 22.00 0.22 -3.87 16 18 C -0.07 -1.33 9.71 22.44 0.22 -1.11 16 19 C -0.08 -1.81 5.74 -21.31 -0.12 -1.93 16 20 C -0.09 -1.43 9.76 22.38 0.22 -1.22 16 21 C -0.13 -1.71 9.95 22.05 0.22 -1.49 16 22 C -0.10 -1.66 10.02 22.33 0.22 -1.44 16 23 C -0.14 -3.03 9.49 22.51 0.21 -2.82 16 24 C -0.03 -0.80 5.90 -19.94 -0.12 -0.91 16 25 H 0.28 15.33 8.29 -92.71 -0.77 14.56 16 26 H 0.38 16.31 8.62 -213.32 -1.84 14.48 16 27 H 0.13 4.02 6.39 -2.91 -0.02 4.00 16 28 H 0.39 14.94 9.06 -74.06 -0.67 14.27 16 29 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.13 2.71 6.41 -2.91 -0.02 2.69 16 Total: -1.00 -85.92 306.60 1.56 -84.36 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -1.33 Total: 36.90 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.31 Total: -6.63 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -1.37 Total: -91.51 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -1.07 Total: -65.14 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -85.92 1.56 -84.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059465336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.042 kcal (2) G-P(sol) polarization free energy of solvation -85.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds