Wall clock time and date at job start Tue Mar 31 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 S 1.81002 * 109.47156 * 179.97438 * 15 13 3 17 17 C 1.76193 * 100.00049 * 180.02562 * 16 15 13 18 18 N 1.31288 * 126.48738 * 359.68248 * 17 16 15 19 19 N 1.28519 * 109.86183 * 179.88307 * 18 17 16 20 20 C 1.30303 * 110.07581 * 0.39605 * 19 18 17 21 21 N 1.36540 * 126.48532 * 180.02562 * 17 16 15 22 22 C 1.46499 * 127.14290 * 359.95491 * 21 17 16 23 23 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 24 24 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 25 25 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 27 27 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 29 29 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 30 30 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 33 33 H 1.07999 * 126.34019 * 179.76208 * 20 19 18 34 34 H 1.09006 * 109.46808 * 90.00411 * 22 21 17 35 35 H 1.08995 * 109.47690 * 210.00124 * 22 21 17 36 36 H 1.09001 * 109.47236 * 330.01145 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 16 2.3848 2.4146 3.8481 17 6 2.0126 1.3582 5.2082 18 7 1.5704 0.1240 5.1399 19 7 1.4092 -0.3483 6.3242 20 6 1.7280 0.5510 7.2116 21 7 2.1233 1.6705 6.5328 22 6 2.5727 2.9409 7.1076 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 5.7170 2.5725 -4.0840 31 1 0.9443 1.0114 2.5302 32 1 2.6227 0.4186 2.5299 33 1 1.6872 0.4341 8.2845 34 1 1.7152 3.5986 7.2504 35 1 3.0523 2.7555 8.0686 36 1 3.2847 3.4140 6.4313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077207353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:15 Heat of formation + Delta-G solvation = 28.945330 kcal Electronic energy + Delta-G solvation = -19811.661665 eV Core-core repulsion = 16651.317573 eV Total energy + Delta-G solvation = -3160.344091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.85478 -40.85678 -37.13727 -35.96041 -34.89888 -32.36947 -31.82779 -31.11564 -29.05056 -28.49313 -24.57680 -24.25074 -23.69200 -23.26850 -20.22336 -19.14240 -18.95399 -18.16488 -17.49269 -17.40696 -16.94904 -16.66986 -16.18441 -15.87234 -15.04346 -14.80733 -14.71983 -14.54852 -14.34274 -14.02399 -13.75487 -13.67369 -13.37748 -13.15441 -12.76187 -12.58655 -12.42731 -12.09764 -12.01996 -11.92590 -11.74120 -11.36961 -11.33467 -11.05872 -10.94263 -10.82332 -9.53630 -8.79166 -8.33322 -6.39070 -0.13809 0.61677 0.83232 1.34382 1.38073 1.46435 1.55018 1.72129 1.74982 2.19361 2.31778 3.00885 3.36410 3.68701 3.83891 3.88596 4.04407 4.15325 4.25738 4.34868 4.38069 4.59408 4.65051 4.67900 4.77228 4.87037 4.93353 4.96110 5.00288 5.36156 5.45115 5.55721 5.79295 6.21231 6.51191 6.62773 7.11171 7.27513 7.53984 8.83614 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.003935 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.383514 B = 7114.117228 C = 7615.058400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.588 5.588 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.237 1.237 13 C 0.520 3.480 14 O -0.574 6.574 15 C -0.125 4.125 16 S 0.068 5.932 17 C 0.132 3.868 18 N -0.328 5.328 19 N -0.337 5.337 20 C 0.177 3.823 21 N -0.465 5.465 22 C 0.062 3.938 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.269 0.731 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.272 0.728 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 -0.997 21.058 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.319 5.319 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.160 1.160 13 C 0.306 3.694 14 O -0.455 6.455 15 C -0.277 4.277 16 S 0.294 5.706 17 C -0.244 4.244 18 N -0.173 5.173 19 N -0.176 5.176 20 C -0.113 4.113 21 N -0.159 5.159 22 C -0.078 4.078 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.288 0.712 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.953 -0.577 20.310 23.082 hybrid contribution 0.307 0.240 -0.218 0.446 sum -10.646 -0.337 20.092 22.740 Atomic orbital electron populations 1.22154 0.93748 1.03783 1.02203 1.21846 0.95824 0.80886 1.04183 1.47927 1.63325 1.15191 1.05451 1.19390 0.95028 0.93232 0.81940 1.21547 0.97000 1.32299 1.06859 0.95244 1.25837 0.96694 0.97143 0.98891 1.70046 1.17479 1.46502 1.24455 0.85728 0.80509 0.79070 0.77742 1.20017 1.20129 1.15967 1.20002 0.77742 0.86277 0.85373 1.90680 1.47639 1.19755 1.87426 1.23657 1.09295 1.02303 0.92431 1.86175 1.82938 1.11847 0.89606 1.27269 1.07353 0.98791 0.91034 1.74588 1.19688 1.05964 1.17074 1.73820 1.20906 1.27145 0.95722 1.27647 0.99472 0.81633 1.02535 1.46813 1.49458 1.15745 1.03856 1.22563 1.02653 0.80805 1.01805 0.92310 0.92786 0.88833 0.90190 0.89075 0.92841 0.95786 0.92241 0.84164 0.85429 0.71215 0.87989 0.84989 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.24 71.98 0.74 -3.00 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.59 -23.68 2.46 -826.16 -2.03 -25.71 16 4 C 0.23 10.85 4.23 85.64 0.36 11.21 16 5 C -0.54 -31.51 9.94 25.60 0.25 -31.26 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.73 5.47 84.65 0.46 1.20 16 8 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 9 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 13 C 0.52 20.92 7.69 87.66 0.67 21.59 16 14 O -0.57 -27.91 15.44 -3.03 -0.05 -27.96 16 15 C -0.13 -3.82 4.27 71.24 0.30 -3.51 16 16 S 0.07 1.94 20.94 -56.49 -1.18 0.75 16 17 C 0.13 3.44 8.07 179.55 1.45 4.89 16 18 N -0.33 -9.89 11.60 -56.85 -0.66 -10.55 16 19 N -0.34 -9.08 12.18 -59.32 -0.72 -9.80 16 20 C 0.18 2.95 12.80 179.76 2.30 5.26 16 21 N -0.47 -8.30 3.21 -551.23 -1.77 -10.08 16 22 C 0.06 0.51 11.09 127.77 1.42 1.93 16 23 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.08 2.54 8.07 -2.38 -0.02 2.52 16 27 H 0.09 2.37 6.44 -2.39 -0.02 2.35 16 28 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 29 H 0.02 1.23 6.85 -2.39 -0.02 1.21 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.14 3.67 7.19 -2.39 -0.02 3.66 16 32 H 0.13 3.73 7.40 -2.40 -0.02 3.72 16 33 H 0.27 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.09 0.90 7.86 -2.39 -0.02 0.88 16 Total: -1.00 -83.76 322.89 5.28 -78.48 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.03 Total: 6.70 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 8.47 Total: 11.67 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.88 Total: -115.50 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.05 Total: -27.96 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.18 Total: 0.75 kcal Total: -83.76 5.28 -78.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077207353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.428 kcal (2) G-P(sol) polarization free energy of solvation -83.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds