Wall clock time and date at job start Tue Mar 31 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 S 1.76200 * 119.94449 * 179.75015 * 7 6 5 9 9 O 1.42100 * 104.27959 * 26.09039 * 8 7 6 10 10 O 1.42102 * 104.27802 * 153.94756 * 8 7 6 11 11 C 1.81400 * 104.44835 * 270.01653 * 8 7 6 12 12 C 1.52997 * 109.47209 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47134 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99938 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00197 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46992 * 89.99925 * 17 15 13 19 19 H 1.48496 * 109.47437 * 209.99613 * 17 15 13 20 20 H 1.48496 * 109.47337 * 330.00456 * 17 15 13 21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 30 30 H 1.09002 * 109.47306 * 300.00675 * 11 8 7 31 31 H 1.09009 * 109.46896 * 59.99911 * 11 8 7 32 32 H 1.08996 * 109.46967 * 299.99896 * 12 11 8 33 33 H 1.08995 * 109.47278 * 60.00408 * 12 11 8 34 34 H 0.96996 * 120.00298 * 179.97438 * 16 15 13 35 35 H 1.08008 * 119.97547 * 179.97438 * 21 7 6 36 36 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 16 7.8429 2.1190 0.0022 9 8 8.3527 0.9385 -0.6026 10 8 8.0284 3.3912 -0.6032 11 6 8.2909 2.1787 1.7590 12 6 9.8019 2.3779 1.8935 13 6 10.1742 2.4268 3.3530 14 1 9.4094 2.3264 4.1090 15 6 11.4909 2.6009 3.7232 16 7 12.4220 2.7237 2.8026 17 14 11.9522 2.6623 5.5322 18 1 12.2579 1.2905 6.0120 19 1 13.1470 3.5262 5.7094 20 1 10.8187 3.2187 6.3136 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0003 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0032 30 1 7.7706 3.0077 2.2388 31 1 8.0039 1.2431 2.2392 32 1 10.3218 1.5485 1.4140 33 1 10.0893 3.3132 1.4134 34 1 13.3483 2.8465 3.0629 35 1 5.6690 3.9828 0.0011 36 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:25 Heat of formation + Delta-G solvation = -96.375060 kcal Electronic energy + Delta-G solvation = -19563.395782 eV Core-core repulsion = 16333.031888 eV Total energy + Delta-G solvation = -3230.363894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40908 -37.77340 -36.54422 -35.37588 -33.89306 -32.42469 -31.17578 -31.15603 -29.91600 -25.60338 -24.49538 -23.09944 -22.06862 -21.43603 -18.76651 -18.49021 -17.39568 -16.51333 -16.43909 -16.29691 -15.26406 -15.18125 -14.82720 -14.54875 -14.02120 -13.75946 -13.70376 -13.41359 -13.24753 -12.81392 -12.56866 -12.37530 -12.10769 -11.74950 -11.52847 -11.46196 -11.20538 -11.08223 -11.07633 -10.95297 -10.59804 -10.38387 -10.35498 -9.70197 -9.24476 -9.19489 -8.67113 -8.49949 -6.12191 -4.17846 0.57430 0.91604 1.15314 2.77675 3.26709 3.31737 3.33143 3.35783 3.49751 4.33367 4.40475 4.43568 4.49400 4.55058 4.61521 4.79698 4.81823 5.04648 5.15914 5.23050 5.27150 5.35088 5.41466 5.59777 5.68724 5.72221 5.78060 5.84622 6.03121 6.10621 6.47259 6.48939 7.05168 7.30943 7.36617 7.80918 8.17094 8.85655 9.46910 10.98814 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.003533 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.272404 B = 7923.374550 C = 8435.267068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.313 6.313 4 C 0.173 3.827 5 C -0.232 4.232 6 C 0.016 3.984 7 C -0.692 4.692 8 S 2.479 3.521 9 O -0.949 6.949 10 O -0.948 6.948 11 C -0.566 4.566 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.014 3.986 22 C -0.174 4.174 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.606 -4.825 -4.596 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.227 6.227 4 C 0.127 3.873 5 C -0.252 4.252 6 C -0.002 4.002 7 C -0.776 4.776 8 S 2.662 3.338 9 O -0.946 6.946 10 O -0.945 6.945 11 C -0.699 4.699 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.004 4.004 22 C -0.194 4.194 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.132 -4.602 -5.406 22.292 hybrid contribution -0.355 -0.352 1.547 1.626 sum -21.487 -4.955 -3.859 22.386 Atomic orbital electron populations 1.21783 0.92495 1.03014 1.03622 1.22882 0.96074 0.81668 1.01862 1.86091 1.19026 1.29844 1.87700 1.19248 0.82143 0.94450 0.91481 1.21334 0.94376 0.98269 1.11187 1.20793 0.94869 0.95915 0.88657 1.30883 1.27204 0.99394 1.20156 1.06111 0.73323 0.74583 0.79793 1.93509 1.77580 1.48572 1.74957 1.93513 1.84319 1.41772 1.74911 1.30207 1.10827 1.10518 1.18329 1.19030 0.83375 0.98903 1.00018 1.21004 0.93076 1.51199 0.90744 0.91956 1.25062 0.96457 0.94920 0.98014 1.69952 1.01228 1.48684 1.32943 0.86465 0.78152 0.78091 0.84555 1.20478 1.21009 1.19741 1.20832 0.92079 0.98488 0.89037 1.20540 0.95328 0.94961 1.08551 0.91449 0.90201 0.91414 0.91660 0.91597 0.84772 0.83737 0.85804 0.85881 0.94606 0.94567 0.92504 0.83291 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.36 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.34 10.14 -19.41 -0.20 -3.54 16 4 C 0.17 2.08 6.69 -39.21 -0.26 1.82 16 5 C -0.23 -2.70 9.04 -39.43 -0.36 -3.05 16 6 C 0.02 0.22 9.46 -39.61 -0.37 -0.15 16 7 C -0.69 -10.30 5.66 -39.56 -0.22 -10.52 16 8 S 2.48 44.54 5.16 -107.50 -0.55 43.98 16 9 O -0.95 -19.37 17.12 -57.54 -0.99 -20.35 16 10 O -0.95 -19.36 17.12 -57.54 -0.99 -20.34 16 11 C -0.57 -10.61 5.92 37.16 0.22 -10.39 16 12 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16 13 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 C 0.01 0.19 9.46 -39.61 -0.37 -0.18 16 22 C -0.17 -2.13 9.99 -39.43 -0.39 -2.52 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.42 7.68 -51.93 -0.40 0.02 16 27 H 0.07 0.42 7.65 -51.93 -0.40 0.03 16 28 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 29 H 0.14 1.76 7.57 -52.48 -0.40 1.36 16 30 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 31 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 35 H 0.15 1.82 7.57 -52.48 -0.40 1.42 16 36 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -34.68 323.05 -8.71 -43.40 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.84 Total: -1.11 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: -1.73 Total: -37.39 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.17 Total: -44.23 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 44.54 SS G_CDS: -0.55 Total: 43.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.68 -8.71 -43.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.980 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds