Wall clock time and date at job start Tue Mar 31 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 S 1.76200 * 119.94449 * 179.75015 * 7 6 5 9 9 O 1.42100 * 104.27959 * 26.09039 * 8 7 6 10 10 O 1.42102 * 104.27802 * 153.94756 * 8 7 6 11 11 C 1.81400 * 104.44835 * 270.01653 * 8 7 6 12 12 C 1.52997 * 109.47209 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47134 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99938 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00197 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46992 * 89.99925 * 17 15 13 19 19 H 1.48496 * 109.47437 * 209.99613 * 17 15 13 20 20 H 1.48496 * 109.47337 * 330.00456 * 17 15 13 21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 30 30 H 1.09002 * 109.47306 * 300.00675 * 11 8 7 31 31 H 1.09009 * 109.46896 * 59.99911 * 11 8 7 32 32 H 1.08996 * 109.46967 * 299.99896 * 12 11 8 33 33 H 1.08995 * 109.47278 * 60.00408 * 12 11 8 34 34 H 0.96996 * 120.00298 * 179.97438 * 16 15 13 35 35 H 1.08008 * 119.97547 * 179.97438 * 21 7 6 36 36 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 16 7.8429 2.1190 0.0022 9 8 8.3527 0.9385 -0.6026 10 8 8.0284 3.3912 -0.6032 11 6 8.2909 2.1787 1.7590 12 6 9.8019 2.3779 1.8935 13 6 10.1742 2.4268 3.3530 14 1 9.4094 2.3264 4.1090 15 6 11.4909 2.6009 3.7232 16 7 12.4220 2.7237 2.8026 17 14 11.9522 2.6623 5.5322 18 1 12.2579 1.2905 6.0120 19 1 13.1470 3.5262 5.7094 20 1 10.8187 3.2187 6.3136 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0003 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0032 30 1 7.7706 3.0077 2.2388 31 1 8.0039 1.2431 2.2392 32 1 10.3218 1.5485 1.4140 33 1 10.0893 3.3132 1.4134 34 1 13.3483 2.8465 3.0629 35 1 5.6690 3.9828 0.0011 36 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097097927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:24 Heat of formation + Delta-G solvation = -120.207712 kcal Electronic energy + Delta-G solvation = -19564.429243 eV Core-core repulsion = 16333.031888 eV Total energy + Delta-G solvation = -3231.397355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27038 -38.66533 -38.09117 -36.92627 -35.87443 -33.12325 -33.04587 -32.09506 -30.81951 -27.56904 -25.20845 -24.21907 -23.35855 -22.72128 -19.98866 -19.54385 -18.94891 -18.11262 -17.38304 -17.17035 -16.88172 -16.51766 -16.48247 -15.76886 -15.15676 -14.86472 -14.62156 -14.52568 -14.41245 -14.18010 -13.69881 -13.33521 -13.24166 -13.11493 -13.05092 -12.91034 -12.76266 -12.72660 -12.21911 -12.11035 -11.97798 -11.90186 -11.76956 -11.62309 -11.01403 -10.62477 -10.20107 -9.64798 -8.24088 -6.37943 -0.83362 -0.16035 0.19614 1.42767 1.44467 1.55669 2.01008 2.11908 2.35923 2.41113 2.98043 3.09526 3.21195 3.63244 3.76460 4.03515 4.04198 4.06658 4.14812 4.18466 4.32465 4.35026 4.47405 4.73519 4.78291 4.86187 4.92932 4.93963 5.04855 5.09820 5.24615 5.30434 5.31715 5.54897 5.70671 6.08002 6.23729 6.75896 7.32102 8.88241 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.003533 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.272404 B = 7923.374550 C = 8435.267068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.320 6.320 4 C 0.176 3.824 5 C -0.227 4.227 6 C 0.006 3.994 7 C -0.697 4.697 8 S 2.497 3.503 9 O -0.980 6.980 10 O -0.980 6.980 11 C -0.564 4.564 12 C 0.017 3.983 13 C -0.539 4.539 14 H 0.077 0.923 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.258 1.258 21 C 0.004 3.996 22 C -0.178 4.178 23 H 0.063 0.937 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.267 0.733 35 H 0.156 0.844 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.397 -5.707 -3.328 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 O -0.233 6.233 4 C 0.129 3.871 5 C -0.247 4.247 6 C -0.013 4.013 7 C -0.786 4.786 8 S 2.684 3.316 9 O -0.977 6.977 10 O -0.977 6.977 11 C -0.696 4.696 12 C -0.021 4.021 13 C -0.578 4.578 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.182 1.182 21 C -0.014 4.014 22 C -0.197 4.197 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.183 0.817 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.173 0.827 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.889 -5.484 -4.129 24.856 hybrid contribution 0.306 -0.130 1.086 1.136 sum -23.583 -5.614 -3.043 24.432 Atomic orbital electron populations 1.21818 0.91166 1.04352 1.03332 1.23249 0.97206 0.80243 1.02992 1.86110 1.18018 1.32117 1.87088 1.19413 0.82994 0.94470 0.90180 1.21618 0.93382 0.99811 1.09848 1.21005 0.96085 0.95454 0.88797 1.30171 1.24034 1.00889 1.23536 1.05060 0.74586 0.73258 0.78687 1.93460 1.79456 1.49440 1.75356 1.93463 1.85776 1.43132 1.75331 1.30090 1.06533 1.12751 1.20243 1.18889 0.87698 0.96588 0.98952 1.21529 0.93725 1.50490 0.92058 0.90500 1.26107 0.96539 0.94447 1.03112 1.70100 1.01695 1.50052 1.35544 0.85313 0.78071 0.78389 0.78489 1.19598 1.20904 1.18151 1.20993 0.92763 0.98432 0.89261 1.20777 0.94909 0.96152 1.07859 0.91747 0.88055 0.91714 0.90535 0.90395 0.81696 0.82963 0.83546 0.83532 0.97169 0.97178 0.92392 0.82656 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 71.98 0.74 -0.42 16 2 C 0.04 0.41 5.46 71.98 0.39 0.81 16 3 O -0.32 -5.84 10.14 -92.39 -0.94 -6.77 16 4 C 0.18 3.73 6.69 22.51 0.15 3.88 16 5 C -0.23 -4.60 9.04 22.37 0.20 -4.40 16 6 C 0.01 0.14 9.46 22.25 0.21 0.35 16 7 C -0.70 -20.09 5.66 22.28 0.13 -19.96 16 8 S 2.50 91.43 5.16 -56.49 -0.29 91.14 16 9 O -0.98 -41.08 17.12 -127.65 -2.19 -43.26 16 10 O -0.98 -41.28 17.12 -127.65 -2.19 -43.46 16 11 C -0.56 -21.25 5.92 71.98 0.43 -20.83 16 12 C 0.02 0.90 4.98 29.85 0.15 1.05 16 13 C -0.54 -29.73 9.11 25.60 0.23 -29.49 16 14 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 16 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 17 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C 0.00 0.11 9.46 22.25 0.21 0.32 16 22 C -0.18 -3.93 9.99 22.37 0.22 -3.70 16 23 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.70 7.68 -2.39 -0.02 0.68 16 27 H 0.08 0.70 7.65 -2.39 -0.02 0.69 16 28 H 0.17 2.22 6.30 -2.91 -0.02 2.20 16 29 H 0.15 3.49 7.57 -2.91 -0.02 3.47 16 30 H 0.15 4.78 8.14 -2.39 -0.02 4.76 16 31 H 0.15 4.75 8.14 -2.39 -0.02 4.73 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.16 3.68 7.57 -2.91 -0.02 3.66 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -76.01 323.05 1.31 -74.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.07 Total: 11.17 kcal Atomic # 6 Polarization: -75.67 SS G_CDS: 3.53 Total: -72.15 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.28 Total: -56.52 kcal Atomic # 8 Polarization: -88.20 SS G_CDS: -5.31 Total: -93.50 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 91.43 SS G_CDS: -0.29 Total: 91.14 kcal Total: -76.01 1.31 -74.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.506 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds