Wall clock time and date at job start Tue Mar 31 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35655 * 116.99880 * 2 1 4 4 C 1.38153 * 120.22950 * 359.97438 * 3 2 1 5 5 C 1.38961 * 120.00168 * 180.02562 * 4 3 2 6 6 O 1.35692 * 119.77139 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99953 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47337 * 180.02562 * 7 6 5 9 9 C 1.38234 * 120.00007 * 269.72927 * 8 7 6 10 10 C 1.38237 * 119.99790 * 179.76577 * 9 8 7 11 11 C 1.38234 * 120.00364 * 0.50499 * 10 9 8 12 12 C 1.38234 * 119.99815 * 359.74708 * 11 10 9 13 13 C 1.38238 * 120.00088 * 0.02562 * 12 11 10 14 14 C 1.39479 * 120.45692 * 359.97438 * 5 4 3 15 15 C 1.36315 * 120.45619 * 359.75564 * 14 5 4 16 16 C 1.40811 * 119.98160 * 0.52212 * 15 14 5 17 17 C 1.41029 * 120.22189 * 179.73510 * 16 15 14 18 18 H 1.07994 * 120.00328 * 154.38947 * 17 16 15 19 19 C 1.39872 * 119.99968 * 334.39023 * 17 16 15 20 20 N 1.30932 * 119.99991 * 334.62676 * 19 17 16 21 21 Si 1.86801 * 120.00253 * 154.62304 * 19 17 16 22 22 H 1.48490 * 109.47252 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47050 * 299.99971 * 21 19 17 24 24 H 1.48502 * 109.47018 * 59.99825 * 21 19 17 25 25 H 1.08996 * 109.47489 * 59.99667 * 1 2 3 26 26 H 1.09004 * 109.47173 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47291 * 299.99898 * 1 2 3 28 28 H 1.08000 * 119.99651 * 359.97438 * 4 3 2 29 29 H 1.08997 * 109.46854 * 300.00216 * 7 6 5 30 30 H 1.08996 * 109.47122 * 59.99956 * 7 6 5 31 31 H 1.08001 * 120.00136 * 359.97438 * 9 8 7 32 32 H 1.08005 * 119.99512 * 180.22877 * 10 9 8 33 33 H 1.07994 * 120.00413 * 179.72673 * 11 10 9 34 34 H 1.07994 * 120.00379 * 179.97438 * 12 11 10 35 35 H 1.07999 * 120.00113 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.77611 * 180.02562 * 14 5 4 37 37 H 1.07995 * 120.00992 * 180.26365 * 15 14 5 38 38 H 0.97006 * 119.99592 * 354.18746 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2970 2.3703 -0.0005 5 6 1.9328 3.6060 -0.0011 6 8 1.1937 4.7440 -0.0021 7 6 1.9082 5.9816 -0.0021 8 6 0.9290 7.1270 -0.0027 9 6 0.4846 7.6558 -1.2001 10 6 -0.4174 8.7033 -1.2006 11 6 -0.8671 9.2289 -0.0038 12 6 -0.4187 8.7035 1.1937 13 6 0.4797 7.6529 1.1943 14 6 3.3254 3.6846 -0.0005 15 6 4.0814 2.5503 0.0055 16 6 3.4569 1.2883 0.0002 17 6 4.2342 0.1116 0.0008 18 1 3.8265 -0.8047 0.4014 19 6 5.5332 0.1313 -0.5174 20 7 5.8651 1.0211 -1.4188 21 14 6.7947 -1.1119 0.0764 22 1 8.0846 -0.8802 -0.6217 23 1 6.9902 -0.9579 1.5405 24 1 6.3122 -2.4854 -0.2168 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2183 2.3181 -0.0014 29 1 2.5341 6.0396 0.8884 30 1 2.5355 6.0390 -0.8915 31 1 0.8396 7.2483 -2.1352 32 1 -0.7674 9.1140 -2.1362 33 1 -1.5684 10.0502 -0.0042 34 1 -0.7696 9.1144 2.1287 35 1 0.8303 7.2427 2.1298 36 1 3.8080 4.6507 -0.0005 37 1 5.1591 2.6196 0.0102 38 1 5.1902 1.6115 -1.7889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115228840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:46 Heat of formation + Delta-G solvation = -35.439037 kcal Electronic energy + Delta-G solvation = -21055.385718 eV Core-core repulsion = 17828.053352 eV Total energy + Delta-G solvation = -3227.332366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59132 -38.93701 -37.74916 -35.81066 -33.43990 -31.93100 -30.96698 -29.15097 -29.10815 -26.51899 -26.15506 -24.49891 -22.63552 -21.73727 -21.01875 -20.35869 -18.12064 -17.46489 -16.90297 -15.75924 -15.63471 -15.17885 -15.02750 -14.77073 -14.54561 -14.14373 -13.97489 -13.69372 -13.45169 -12.89240 -12.80016 -12.61319 -12.34984 -11.79275 -11.63538 -11.29544 -11.08808 -11.02395 -10.99215 -10.73348 -10.62129 -10.35751 -9.91795 -9.65261 -9.45346 -8.98610 -8.89590 -8.84051 -7.51099 -7.24374 -6.96540 -4.20019 1.20836 1.33784 2.67955 2.72753 3.21285 3.29554 3.41697 3.57539 4.08934 4.22600 4.42820 4.56195 4.78969 4.86104 4.96357 5.08582 5.30897 5.41118 5.42644 5.62411 5.63050 5.71461 5.77334 5.88982 5.91279 5.98808 6.04986 6.08505 6.36930 6.41007 6.52005 6.59100 6.72304 6.91448 6.93921 7.17197 7.45928 7.67856 7.74981 8.02117 8.12045 8.36978 8.43558 8.89136 8.94717 10.13856 Molecular weight = 284.12amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.003640 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.883477 B = 7691.242507 C = 8457.785214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.040 3.960 4 C -0.189 4.189 5 C 0.013 3.987 6 O -0.321 6.321 7 C 0.106 3.894 8 C -0.083 4.083 9 C -0.098 4.098 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.098 4.098 14 C -0.179 4.179 15 C -0.174 4.174 16 C 0.066 3.934 17 C -0.508 4.508 18 H 0.079 0.921 19 C 0.037 3.963 20 N -0.805 5.805 21 Si 1.065 2.935 22 H -0.275 1.275 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 10.676 2.030 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C -0.004 4.004 4 C -0.208 4.208 5 C -0.030 4.030 6 O -0.237 6.237 7 C 0.031 3.969 8 C -0.083 4.083 9 C -0.116 4.116 10 C -0.143 4.143 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.117 4.117 14 C -0.198 4.198 15 C -0.194 4.194 16 C 0.063 3.937 17 C -0.536 4.536 18 H 0.097 0.903 19 C -0.184 4.184 20 N -0.429 5.429 21 Si 0.889 3.111 22 H -0.200 1.200 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.969 10.079 1.841 12.391 hybrid contribution -1.779 0.810 0.104 1.957 sum -8.748 10.888 1.945 14.102 Atomic orbital electron populations 1.22783 0.81410 1.01961 1.00189 1.85999 1.18498 1.27579 1.89959 1.18817 0.91951 0.82272 1.07403 1.19855 0.98060 0.90046 1.12864 1.18089 0.89331 0.84431 1.11195 1.85876 1.34982 1.11677 1.91168 1.21293 0.92385 0.81702 1.01547 1.19721 0.98687 0.96313 0.93556 1.21135 0.96715 0.96019 0.97771 1.21136 0.97970 0.97085 0.98143 1.21161 0.99931 0.99987 0.92673 1.21131 0.98031 0.97068 0.98128 1.21128 0.96755 0.96020 0.97755 1.20448 0.92181 0.98211 1.08939 1.20488 0.98873 0.90871 1.09142 1.17075 0.87888 0.93856 0.94902 1.20290 0.99557 0.97096 1.36672 0.90275 1.26973 0.98983 0.99347 0.93049 1.70508 1.39801 1.15265 1.17376 0.83635 0.75324 0.75050 0.77064 1.20015 1.20103 1.20189 0.93948 0.89776 0.94015 0.87517 0.92098 0.92053 0.85809 0.85998 0.86179 0.86011 0.85833 0.88337 0.86642 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.22 9.79 -18.66 -0.18 -7.40 16 3 C 0.04 1.02 6.72 -38.40 -0.26 0.76 16 4 C -0.19 -4.42 8.97 -39.34 -0.35 -4.77 16 5 C 0.01 0.30 6.71 -38.85 -0.26 0.04 16 6 O -0.32 -6.59 10.10 -18.78 -0.19 -6.78 16 7 C 0.11 1.75 4.86 36.00 0.17 1.93 16 8 C -0.08 -1.19 5.51 -104.63 -0.58 -1.77 16 9 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 10 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 11 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 12 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 13 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 14 C -0.18 -4.12 8.95 -39.81 -0.36 -4.48 16 15 C -0.17 -4.44 7.88 -39.30 -0.31 -4.75 16 16 C 0.07 1.78 5.31 -106.65 -0.57 1.21 16 17 C -0.51 -13.87 8.64 -37.91 -0.33 -14.20 16 18 H 0.08 2.17 7.71 -52.49 -0.40 1.77 16 19 C 0.04 0.94 4.93 -17.32 -0.09 0.86 16 20 N -0.80 -21.58 12.32 55.54 0.68 -20.90 16 21 Si 1.07 22.03 30.00 -169.99 -5.10 16.93 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H 0.04 0.70 7.66 -51.93 -0.40 0.30 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 28 H 0.11 2.27 6.30 -52.49 -0.33 1.94 16 29 H 0.06 0.96 7.59 -51.93 -0.39 0.57 16 30 H 0.06 0.98 7.58 -51.93 -0.39 0.58 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.10 2.00 6.25 -52.49 -0.33 1.67 16 37 H 0.12 3.01 6.49 -52.49 -0.34 2.67 16 38 H 0.30 8.16 6.69 -40.82 -0.27 7.89 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -30.06 323.72 -8.39 -38.45 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.59 Total: 6.91 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -3.89 Total: -32.10 kcal Atomic # 7 Polarization: -21.58 SS G_CDS: 0.68 Total: -20.90 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.37 Total: -14.17 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.10 Total: 16.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.06 -8.39 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115228840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.011 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds