Wall clock time and date at job start Tue Mar 31 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35655 * 116.99880 * 2 1 4 4 C 1.38153 * 120.22950 * 359.97438 * 3 2 1 5 5 C 1.38961 * 120.00168 * 180.02562 * 4 3 2 6 6 O 1.35692 * 119.77139 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99953 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47337 * 180.02562 * 7 6 5 9 9 C 1.38234 * 120.00007 * 269.72927 * 8 7 6 10 10 C 1.38237 * 119.99790 * 179.76577 * 9 8 7 11 11 C 1.38234 * 120.00364 * 0.50499 * 10 9 8 12 12 C 1.38234 * 119.99815 * 359.74708 * 11 10 9 13 13 C 1.38238 * 120.00088 * 0.02562 * 12 11 10 14 14 C 1.39479 * 120.45692 * 359.97438 * 5 4 3 15 15 C 1.36315 * 120.45619 * 359.75564 * 14 5 4 16 16 C 1.40811 * 119.98160 * 0.52212 * 15 14 5 17 17 C 1.41029 * 120.22189 * 179.73510 * 16 15 14 18 18 H 1.07994 * 120.00328 * 154.38947 * 17 16 15 19 19 C 1.39872 * 119.99968 * 334.39023 * 17 16 15 20 20 N 1.30932 * 119.99991 * 334.62676 * 19 17 16 21 21 Si 1.86801 * 120.00253 * 154.62304 * 19 17 16 22 22 H 1.48490 * 109.47252 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47050 * 299.99971 * 21 19 17 24 24 H 1.48502 * 109.47018 * 59.99825 * 21 19 17 25 25 H 1.08996 * 109.47489 * 59.99667 * 1 2 3 26 26 H 1.09004 * 109.47173 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47291 * 299.99898 * 1 2 3 28 28 H 1.08000 * 119.99651 * 359.97438 * 4 3 2 29 29 H 1.08997 * 109.46854 * 300.00216 * 7 6 5 30 30 H 1.08996 * 109.47122 * 59.99956 * 7 6 5 31 31 H 1.08001 * 120.00136 * 359.97438 * 9 8 7 32 32 H 1.08005 * 119.99512 * 180.22877 * 10 9 8 33 33 H 1.07994 * 120.00413 * 179.72673 * 11 10 9 34 34 H 1.07994 * 120.00379 * 179.97438 * 12 11 10 35 35 H 1.07999 * 120.00113 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.77611 * 180.02562 * 14 5 4 37 37 H 1.07995 * 120.00992 * 180.26365 * 15 14 5 38 38 H 0.97006 * 119.99592 * 354.18746 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2970 2.3703 -0.0005 5 6 1.9328 3.6060 -0.0011 6 8 1.1937 4.7440 -0.0021 7 6 1.9082 5.9816 -0.0021 8 6 0.9290 7.1270 -0.0027 9 6 0.4846 7.6558 -1.2001 10 6 -0.4174 8.7033 -1.2006 11 6 -0.8671 9.2289 -0.0038 12 6 -0.4187 8.7035 1.1937 13 6 0.4797 7.6529 1.1943 14 6 3.3254 3.6846 -0.0005 15 6 4.0814 2.5503 0.0055 16 6 3.4569 1.2883 0.0002 17 6 4.2342 0.1116 0.0008 18 1 3.8265 -0.8047 0.4014 19 6 5.5332 0.1313 -0.5174 20 7 5.8651 1.0211 -1.4188 21 14 6.7947 -1.1119 0.0764 22 1 8.0846 -0.8802 -0.6217 23 1 6.9902 -0.9579 1.5405 24 1 6.3122 -2.4854 -0.2168 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2183 2.3181 -0.0014 29 1 2.5341 6.0396 0.8884 30 1 2.5355 6.0390 -0.8915 31 1 0.8396 7.2483 -2.1352 32 1 -0.7674 9.1140 -2.1362 33 1 -1.5684 10.0502 -0.0042 34 1 -0.7696 9.1144 2.1287 35 1 0.8303 7.2427 2.1298 36 1 3.8080 4.6507 -0.0005 37 1 5.1591 2.6196 0.0102 38 1 5.1902 1.6115 -1.7889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115228840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:44 Heat of formation + Delta-G solvation = -51.099482 kcal Electronic energy + Delta-G solvation = -21056.064806 eV Core-core repulsion = 17828.053352 eV Total energy + Delta-G solvation = -3228.011454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.120 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11485 -40.27645 -39.29686 -37.62767 -35.26851 -33.08873 -31.85056 -31.00193 -30.90882 -28.08575 -27.44954 -26.36937 -23.52917 -23.08981 -22.87550 -21.81830 -20.01639 -19.19496 -17.96163 -17.21275 -16.93442 -16.90835 -16.47482 -16.37154 -16.10255 -15.57987 -15.37628 -15.09545 -14.64199 -14.49927 -14.31941 -13.81662 -13.73599 -13.40905 -13.25063 -12.93278 -12.68095 -12.36517 -12.28922 -12.11587 -11.94176 -11.90907 -11.65137 -11.45571 -11.26266 -10.76352 -9.87879 -9.83050 -9.39524 -9.23011 -8.89928 -6.22431 0.25308 0.44558 0.74877 0.83042 1.52855 1.64227 1.82558 2.37237 2.39051 2.64727 2.76019 3.04444 3.43696 3.77261 3.82276 4.07330 4.10749 4.23866 4.24003 4.27084 4.30799 4.36984 4.40020 4.58260 4.64967 4.69023 4.69630 4.93374 4.99786 5.01325 5.10464 5.26303 5.49283 5.50140 5.55000 5.61759 5.73669 5.76862 6.04162 6.05234 6.11667 6.45535 6.68672 6.93038 7.05573 8.11248 Molecular weight = 284.12amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.003640 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.883477 B = 7691.242507 C = 8457.785214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.332 6.332 3 C 0.037 3.963 4 C -0.199 4.199 5 C 0.031 3.969 6 O -0.327 6.327 7 C 0.102 3.898 8 C -0.109 4.109 9 C -0.114 4.114 10 C -0.127 4.127 11 C -0.114 4.114 12 C -0.126 4.126 13 C -0.113 4.113 14 C -0.186 4.186 15 C -0.180 4.180 16 C 0.028 3.972 17 C -0.544 4.544 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.825 5.825 21 Si 1.117 2.883 22 H -0.270 1.270 23 H -0.264 1.264 24 H -0.262 1.262 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.053 0.947 28 H 0.129 0.871 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 12.248 2.511 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.246 6.246 3 C -0.008 4.008 4 C -0.219 4.219 5 C -0.013 4.013 6 O -0.243 6.243 7 C 0.027 3.973 8 C -0.109 4.109 9 C -0.132 4.132 10 C -0.145 4.145 11 C -0.132 4.132 12 C -0.144 4.144 13 C -0.131 4.131 14 C -0.205 4.205 15 C -0.200 4.200 16 C 0.026 3.974 17 C -0.573 4.573 18 H 0.084 0.916 19 C -0.212 4.212 20 N -0.450 5.450 21 Si 0.934 3.066 22 H -0.194 1.194 23 H -0.189 1.189 24 H -0.186 1.186 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.720 11.673 2.322 14.754 hybrid contribution -1.529 0.539 -0.037 1.622 sum -10.248 12.212 2.285 16.106 Atomic orbital electron populations 1.23152 0.78229 1.04594 1.01103 1.85953 1.21828 1.27066 1.89782 1.18970 0.91825 0.83514 1.06521 1.20108 0.99224 0.89739 1.12806 1.18266 0.89368 0.85448 1.08237 1.85889 1.35573 1.12231 1.90598 1.21526 0.93265 0.80631 1.01832 1.19654 0.99929 0.96401 0.94915 1.21293 0.97574 0.97036 0.97328 1.21479 0.96990 0.96191 0.99809 1.21608 0.99468 1.00114 0.91990 1.21484 0.97011 0.96144 0.99780 1.21297 0.97518 0.96966 0.97322 1.20650 0.92495 0.98598 1.08734 1.20466 0.98492 0.91467 1.09587 1.17440 0.89267 0.94422 0.96312 1.20367 1.01048 0.96955 1.38904 0.91607 1.28352 1.00535 1.00291 0.92026 1.70626 1.39069 1.16510 1.18803 0.83014 0.73098 0.73372 0.77136 1.19439 1.18898 1.18647 0.93089 0.86455 0.92820 0.85279 0.91599 0.91849 0.85815 0.83450 0.82901 0.83352 0.85622 0.85850 0.87949 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 9.81 113.37 1.11 1.91 16 2 O -0.33 -15.75 9.79 -89.70 -0.88 -16.63 16 3 C 0.04 1.90 6.72 23.04 0.15 2.05 16 4 C -0.20 -9.27 8.97 22.42 0.20 -9.07 16 5 C 0.03 1.42 6.71 22.74 0.15 1.57 16 6 O -0.33 -13.15 10.10 -90.12 -0.91 -14.06 16 7 C 0.10 3.31 4.86 71.23 0.35 3.66 16 8 C -0.11 -3.02 5.51 -19.87 -0.11 -3.13 16 9 C -0.11 -2.81 9.70 22.27 0.22 -2.59 16 10 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 11 C -0.11 -1.92 10.05 22.27 0.22 -1.70 16 12 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 13 C -0.11 -2.73 9.70 22.27 0.22 -2.51 16 14 C -0.19 -8.66 8.95 22.12 0.20 -8.46 16 15 C -0.18 -9.53 7.88 22.45 0.18 -9.36 16 16 C 0.03 1.59 5.31 -21.18 -0.11 1.48 16 17 C -0.54 -30.97 8.64 23.35 0.20 -30.77 16 18 H 0.07 3.78 7.71 -2.91 -0.02 3.76 16 19 C 0.00 0.11 4.93 85.22 0.42 0.53 16 20 N -0.83 -45.92 12.32 21.82 0.27 -45.65 16 21 Si 1.12 45.11 30.00 68.60 2.06 47.17 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 26 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 27 H 0.05 1.66 7.67 -2.38 -0.02 1.64 16 28 H 0.13 5.31 6.30 -2.91 -0.02 5.29 16 29 H 0.07 2.04 7.59 -2.39 -0.02 2.02 16 30 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 31 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.12 5.00 6.25 -2.91 -0.02 4.98 16 37 H 0.10 5.59 6.49 -2.91 -0.02 5.57 16 38 H 0.28 16.23 6.69 -92.70 -0.62 15.61 16 Total: -1.00 -67.25 323.72 5.60 -61.66 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 1.21 Total: 28.27 kcal Atomic # 6 Polarization: -64.60 SS G_CDS: 3.85 Total: -60.76 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.27 Total: -45.65 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.79 Total: -30.69 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.06 Total: 47.17 kcal Total: -67.25 5.60 -61.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115228840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.556 kcal (2) G-P(sol) polarization free energy of solvation -67.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds