Wall clock time and date at job start Tue Mar 31 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86807 * 120.00288 * 2 1 4 4 H 1.48505 * 109.46591 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46900 * 119.99735 * 3 2 1 6 6 H 1.48497 * 109.47108 * 239.99780 * 3 2 1 7 7 C 1.40051 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00225 * 4.60998 * 7 2 1 9 9 C 1.46373 * 119.99974 * 184.60422 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.16538 * 9 7 2 11 11 N 1.34786 * 119.99966 * 186.16135 * 9 7 2 12 12 C 1.47598 * 122.42830 * 0.02983 * 11 9 7 13 13 S 1.84074 * 102.63619 * 204.80819 * 12 11 9 14 14 C 1.84208 * 93.91117 * 326.56215 * 13 12 11 15 15 C 1.45497 * 122.42991 * 179.73759 * 11 9 7 16 16 H 1.09006 * 108.75297 * 57.95135 * 15 11 9 17 17 C 1.50703 * 108.75619 * 299.89710 * 15 11 9 18 18 O 1.21282 * 119.99849 * 359.97438 * 17 15 11 19 19 N 1.34773 * 120.00333 * 180.02562 * 17 15 11 20 20 C 1.47029 * 125.64435 * 359.68705 * 19 17 15 21 21 C 1.54315 * 107.27245 * 180.97099 * 20 19 17 22 22 C 1.55153 * 102.86645 * 22.52135 * 21 20 19 23 23 C 1.47419 * 125.65324 * 179.97438 * 19 17 15 24 24 H 0.97001 * 120.00430 * 174.87580 * 1 2 3 25 25 H 1.09003 * 110.77797 * 323.09382 * 12 11 9 26 26 H 1.09006 * 110.78038 * 86.52290 * 12 11 9 27 27 H 1.09005 * 111.05305 * 150.26935 * 14 13 12 28 28 H 1.08995 * 111.05384 * 274.20332 * 14 13 12 29 29 H 1.09000 * 109.88114 * 300.51010 * 20 19 17 30 30 H 1.09003 * 109.88315 * 61.68403 * 20 19 17 31 31 H 1.09011 * 110.92357 * 264.10970 * 21 20 19 32 32 H 1.08996 * 110.59189 * 140.78802 * 21 20 19 33 33 H 1.08997 * 111.01012 * 206.22655 * 22 21 20 34 34 H 1.08999 * 111.03427 * 82.39234 * 22 21 20 35 35 H 1.08996 * 110.37036 * 274.67689 * 23 19 17 36 36 H 1.09004 * 110.36629 * 36.99886 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6963 1.2125 6 1 3.0945 1.6963 -1.2124 7 6 2.0069 -1.2129 0.0005 8 1 1.4695 -2.1467 -0.0742 9 6 3.4671 -1.2149 0.1023 10 8 4.0647 -0.1733 0.2990 11 7 4.1497 -2.3705 -0.0218 12 6 3.4798 -3.6636 -0.2615 13 16 4.6931 -4.8757 0.4071 14 6 6.1571 -3.8678 -0.0766 15 6 5.6007 -2.4327 0.0647 16 1 5.9118 -2.0325 1.0298 17 6 6.1884 -1.5715 -1.0236 18 8 5.4576 -0.9742 -1.7852 19 7 7.5259 -1.4660 -1.1511 20 6 8.5229 -2.1281 -0.2971 21 6 9.9164 -1.6970 -0.8008 22 6 9.6192 -0.3677 -1.5436 23 6 8.2316 -0.6629 -2.1661 24 1 -0.4851 -0.8367 -0.0750 25 1 2.5378 -3.7182 0.2843 26 1 3.3199 -3.8246 -1.3277 27 1 6.9909 -4.0362 0.6051 28 1 6.4494 -4.0711 -1.1068 29 1 8.3887 -1.8172 0.7389 30 1 8.4201 -3.2103 -0.3779 31 1 10.3290 -2.4377 -1.4860 32 1 10.5917 -1.5276 0.0378 33 1 10.3624 -0.1781 -2.3181 34 1 9.5646 0.4671 -0.8449 35 1 8.3430 -1.2313 -3.0894 36 1 7.6948 0.2669 -2.3546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274138528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:00 Heat of formation + Delta-G solvation = -88.133700 kcal Electronic energy + Delta-G solvation = -21286.254244 eV Core-core repulsion = 18088.540473 eV Total energy + Delta-G solvation = -3197.713770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62542 -39.91660 -38.21309 -36.91906 -35.16804 -33.47420 -31.72808 -29.82776 -28.34049 -28.23703 -25.78315 -23.79237 -22.26509 -21.72571 -20.37142 -19.56379 -18.61298 -18.23461 -17.68676 -17.13907 -16.62403 -16.38045 -15.86779 -15.64675 -15.26339 -14.89712 -14.57567 -14.47411 -14.42778 -14.17275 -13.94567 -13.81276 -13.33196 -13.14927 -13.02111 -12.62080 -12.43862 -12.19707 -12.08126 -11.96246 -11.57593 -11.37684 -11.25040 -10.89022 -10.16418 -9.70907 -9.65257 -9.28368 -8.97704 -7.20233 0.52718 0.83730 1.34837 1.44785 1.53355 1.68761 1.89638 2.17498 2.22310 2.47413 3.15393 3.20978 3.40992 3.68272 3.73974 3.87803 4.06291 4.09259 4.20718 4.27528 4.30888 4.40757 4.49376 4.64251 4.84244 4.93744 4.95659 4.99272 5.13770 5.28651 5.40604 5.44853 5.56520 5.86077 6.42803 6.55955 6.71849 7.13227 7.83763 8.06046 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.007209 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.537236 B = 3883.183232 C = 5255.990122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.036 3.964 3 Si 1.157 2.843 4 H -0.302 1.302 5 H -0.292 1.292 6 H -0.311 1.311 7 C -0.607 4.607 8 H 0.076 0.924 9 C 0.572 3.428 10 O -0.623 6.623 11 N -0.623 5.623 12 C 0.175 3.825 13 S -0.263 6.263 14 C -0.047 4.047 15 C 0.125 3.875 16 H 0.099 0.901 17 C 0.513 3.487 18 O -0.566 6.566 19 N -0.623 5.623 20 C 0.079 3.921 21 C -0.117 4.117 22 C -0.124 4.124 23 C 0.095 3.905 24 H 0.280 0.720 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.772 -9.828 -0.711 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.179 4.179 3 Si 0.990 3.010 4 H -0.232 1.232 5 H -0.220 1.220 6 H -0.240 1.240 7 C -0.644 4.644 8 H 0.094 0.906 9 C 0.380 3.620 10 O -0.516 6.516 11 N -0.358 5.358 12 C -0.059 4.059 13 S -0.037 6.037 14 C -0.195 4.195 15 C 0.015 3.985 16 H 0.116 0.884 17 C 0.299 3.701 18 O -0.443 6.443 19 N -0.358 5.358 20 C -0.043 4.043 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.027 4.027 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.102 0.898 27 H 0.185 0.815 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 21.176 -8.584 -0.354 22.852 hybrid contribution -0.573 -0.506 -0.849 1.143 sum 20.603 -9.090 -1.203 22.551 Atomic orbital electron populations 1.70644 1.07490 1.32271 1.36637 1.27579 0.95725 1.06234 0.88360 0.82005 0.70726 0.70634 0.77627 1.23212 1.22046 1.23960 1.22212 0.90382 0.96433 1.55367 0.90584 1.18150 0.88359 0.80721 0.74724 1.90121 1.70820 1.31496 1.59171 1.47899 1.03680 1.07670 1.76576 1.24015 0.97664 0.81765 1.02411 1.87939 1.04034 1.31326 1.80352 1.24691 0.98437 0.88593 1.07782 1.21082 0.82714 0.96552 0.98149 0.88362 1.20980 0.81495 0.82132 0.85503 1.90735 1.60259 1.47243 1.46040 1.48593 1.04096 1.49162 1.33980 1.22637 0.88294 0.98707 0.94622 1.22661 0.94407 0.96712 1.01730 1.22779 0.94024 0.98617 1.00827 1.22378 0.93599 0.94664 0.92061 0.90894 0.87571 0.89839 0.81452 0.86936 0.90869 0.88554 0.88399 0.87652 0.87324 0.91385 0.90621 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.02 13.64 21.84 0.30 -49.72 16 2 C 0.04 2.20 5.52 85.31 0.47 2.67 16 3 Si 1.16 65.40 25.99 68.60 1.78 67.18 16 4 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 5 H -0.29 -16.86 6.78 99.48 0.67 -16.19 16 6 H -0.31 -18.73 7.11 99.48 0.71 -18.02 16 7 C -0.61 -35.89 9.31 24.83 0.23 -35.66 16 8 H 0.08 4.33 6.52 -2.91 -0.02 4.31 16 9 C 0.57 32.44 6.49 86.36 0.56 33.00 16 10 O -0.62 -38.33 10.75 14.13 0.15 -38.18 16 11 N -0.62 -28.15 2.76 -812.51 -2.24 -30.39 16 12 C 0.18 6.59 7.07 127.56 0.90 7.49 16 13 S -0.26 -7.40 23.44 -56.49 -1.32 -8.72 16 14 C -0.05 -1.07 5.19 72.52 0.38 -0.69 16 15 C 0.12 4.43 2.45 44.97 0.11 4.54 16 16 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 17 C 0.51 20.22 6.52 87.66 0.57 20.80 16 18 O -0.57 -29.73 14.85 15.40 0.23 -29.50 16 19 N -0.62 -17.36 3.32 -811.78 -2.69 -20.05 16 20 C 0.08 1.23 5.78 86.72 0.50 1.73 16 21 C -0.12 -1.13 6.95 31.78 0.22 -0.91 16 22 C -0.12 -1.80 7.08 31.99 0.23 -1.58 16 23 C 0.10 2.35 6.91 86.86 0.60 2.95 16 24 H 0.28 15.93 8.72 -92.71 -0.81 15.12 16 25 H 0.11 4.16 6.77 -2.39 -0.02 4.14 16 26 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 27 H 0.17 2.31 6.95 -2.38 -0.02 2.29 16 28 H 0.11 2.34 7.81 -2.39 -0.02 2.32 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.01 5.95 -2.39 -0.01 0.99 16 31 H 0.10 0.60 8.14 -2.38 -0.02 0.59 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.27 8.04 -2.38 -0.02 1.25 16 Total: -1.00 -83.30 300.91 1.99 -81.30 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: 1.02 Total: -6.26 kcal Atomic # 6 Polarization: 29.57 SS G_CDS: 4.77 Total: 34.34 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.64 Total: -100.17 kcal Atomic # 8 Polarization: -68.06 SS G_CDS: 0.38 Total: -67.68 kcal Atomic # 14 Polarization: 65.40 SS G_CDS: 1.78 Total: 67.18 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.32 Total: -8.72 kcal Total: -83.30 1.99 -81.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274138528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.831 kcal (2) G-P(sol) polarization free energy of solvation -83.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds