Wall clock time and date at job start Tue Mar 31 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46929 * 2 1 4 4 C 1.34230 * 117.00149 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99631 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00361 * 180.02562 * 4 3 2 7 7 H 1.09001 * 110.53296 * 38.62470 * 6 4 3 8 8 N 1.47311 * 110.60045 * 161.45595 * 6 4 3 9 9 C 1.34522 * 106.61977 * 118.52797 * 8 6 4 10 10 O 1.21540 * 123.76784 * 180.02562 * 9 8 6 11 11 N 1.33786 * 112.45774 * 359.97438 * 9 8 6 12 12 C 1.46507 * 124.17462 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47485 * 90.02747 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.34763 * 111.64763 * 0.23599 * 11 9 8 24 24 O 1.21237 * 127.15871 * 179.73944 * 23 11 9 25 25 H 1.09008 * 109.47105 * 59.99753 * 1 2 3 26 26 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47503 * 300.00064 * 1 2 3 28 28 H 1.08997 * 109.47311 * 240.00439 * 2 1 3 29 29 H 1.09000 * 109.47025 * 119.99951 * 2 1 3 30 30 H 0.97003 * 126.68689 * 298.48590 * 8 6 4 31 31 H 1.09002 * 109.47280 * 330.02451 * 12 11 9 32 32 H 1.09001 * 109.46702 * 210.02644 * 12 11 9 33 33 H 1.09002 * 109.47103 * 59.99596 * 13 12 11 34 34 H 1.08998 * 109.46862 * 300.00408 * 13 12 11 35 35 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 36 36 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 37 37 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.3296 3.5954 0.6383 8 7 5.3267 2.9166 0.4402 9 6 6.0576 3.3848 -0.5875 10 8 7.2673 3.4996 -0.5591 11 7 5.3044 3.7089 -1.6446 12 6 5.8358 4.2439 -2.9007 13 6 6.1611 3.0889 -3.8499 14 6 6.7154 3.6477 -5.1619 15 6 7.0364 2.5099 -6.0966 16 1 6.8620 1.4904 -5.7861 17 6 7.5517 2.7708 -7.3486 18 7 7.8313 1.7779 -8.1644 19 14 7.8525 4.5343 -7.8859 20 1 9.2303 4.9390 -7.5072 21 1 7.6939 4.6369 -9.3588 22 1 6.8728 5.4290 -7.2190 23 6 3.9960 3.4878 -1.4092 24 8 3.0717 3.6865 -2.1682 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.6603 2.6231 1.3025 31 1 6.7424 4.8141 -2.6981 32 1 5.0927 4.8946 -3.3616 33 1 5.2544 2.5188 -4.0525 34 1 6.9041 2.4381 -3.3889 35 1 7.6219 4.2181 -4.9597 36 1 5.9720 4.2982 -5.6226 37 1 8.1941 1.9614 -9.0451 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277827566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:52 Heat of formation + Delta-G solvation = -128.796190 kcal Electronic energy + Delta-G solvation = -22474.336200 eV Core-core repulsion = 18832.106301 eV Total energy + Delta-G solvation = -3642.229899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.79002 -40.63561 -38.75918 -37.25052 -36.15167 -35.73353 -33.47890 -32.17279 -31.58204 -29.08039 -27.72336 -24.29305 -23.75352 -23.07942 -21.63993 -20.81627 -20.22077 -18.63215 -18.29934 -17.39577 -17.21689 -16.82289 -16.50083 -15.85243 -15.62488 -15.39468 -14.64811 -14.29997 -14.19463 -14.13126 -13.99688 -13.75031 -13.14284 -12.82489 -12.35244 -12.33937 -11.99131 -11.84549 -11.41396 -11.28567 -11.12448 -10.92445 -10.83754 -10.47133 -10.25108 -9.98825 -9.91720 -9.78524 -9.41580 -9.17908 -8.52454 -6.02439 -4.01063 1.10379 1.47277 2.04135 2.19632 2.81827 2.87825 3.33108 3.40029 3.42792 3.62037 3.98579 4.31676 4.46659 4.57231 4.60092 4.86830 4.91288 5.27219 5.31038 5.38698 5.42518 5.48111 5.52388 5.60907 5.80199 5.95898 6.32721 6.44957 6.50544 6.78238 6.86436 7.08782 7.19260 7.23178 7.37054 7.77960 7.92886 8.54818 9.02046 9.58930 11.11046 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004016 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.220968 B = 6970.643740 C = 7671.144147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.345 6.345 4 C 0.466 3.534 5 O -0.476 6.476 6 C 0.099 3.901 7 H 0.163 0.837 8 N -0.709 5.709 9 C 0.707 3.293 10 O -0.521 6.521 11 N -0.566 5.566 12 C 0.113 3.887 13 C -0.118 4.118 14 C -0.009 4.009 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.535 3.465 24 O -0.441 6.441 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.445 0.555 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.016 0.984 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 2.411 21.842 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.260 6.260 4 C 0.304 3.696 5 O -0.361 6.361 6 C -0.013 4.013 7 H 0.180 0.820 8 N -0.376 5.376 9 C 0.408 3.592 10 O -0.392 6.392 11 N -0.312 5.312 12 C -0.006 4.006 13 C -0.156 4.156 14 C -0.047 4.047 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.318 3.682 24 O -0.308 6.308 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.290 0.710 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.755 2.263 21.125 25.310 hybrid contribution 0.350 0.393 0.058 0.530 sum -13.406 2.657 21.183 25.209 Atomic orbital electron populations 1.21824 0.92076 1.03249 1.03850 1.23185 0.95764 0.79137 1.03115 1.86496 1.22808 1.33411 1.83329 1.22854 0.81743 0.90946 0.74039 1.90775 1.60439 1.41730 1.43184 1.21497 0.86843 0.94348 0.98629 0.82044 1.45249 1.04401 1.70098 1.17839 1.15814 0.85423 0.77996 0.79992 1.91058 1.09856 1.57348 1.80953 1.46535 1.08103 1.59835 1.16752 1.22209 1.00479 0.98281 0.79613 1.21854 1.01392 0.96221 0.96172 1.19500 0.95772 0.97415 0.91984 1.21073 1.42545 0.93736 0.98503 0.91065 1.25031 0.94899 0.97124 0.96444 1.69917 1.44536 1.31238 1.08480 0.86756 0.79107 0.85630 0.77672 1.20212 1.21376 1.18915 1.19956 0.83382 0.77795 0.87042 1.90880 1.40481 1.48290 1.51185 0.91017 0.89937 0.91382 0.90607 0.90849 0.71002 0.88363 0.88627 0.92223 0.91806 0.96538 0.96207 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.34 -3.46 10.22 -39.26 -0.40 -3.86 16 4 C 0.47 5.21 7.30 36.00 0.26 5.48 16 5 O -0.48 -6.70 16.35 -18.76 -0.31 -7.00 16 6 C 0.10 0.93 4.21 -69.36 -0.29 0.64 16 7 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 8 N -0.71 -7.09 5.84 -60.33 -0.35 -7.44 16 9 C 0.71 10.14 8.62 -88.03 -0.76 9.38 16 10 O -0.52 -9.25 17.48 5.33 0.09 -9.16 16 11 N -0.57 -8.30 2.60 -120.73 -0.31 -8.61 16 12 C 0.11 1.84 5.70 -4.04 -0.02 1.82 16 13 C -0.12 -2.43 5.48 -26.74 -0.15 -2.57 16 14 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 15 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 19 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 23 C 0.53 7.08 7.64 -10.56 -0.08 7.00 16 24 O -0.44 -6.85 17.75 5.59 0.10 -6.75 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.44 3.26 8.96 -40.82 -0.37 2.89 16 31 H 0.10 1.53 7.86 -51.93 -0.41 1.12 16 32 H 0.10 1.43 8.00 -51.93 -0.42 1.01 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -36.42 328.04 -6.03 -42.45 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.92 Total: -2.16 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.97 Total: 7.97 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.11 Total: -43.65 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.52 Total: -26.78 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.42 -6.03 -42.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277827566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.345 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds