Wall clock time and date at job start Tue Mar 31 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46929 * 2 1 4 4 C 1.34230 * 117.00149 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99631 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00361 * 180.02562 * 4 3 2 7 7 H 1.09001 * 110.53296 * 38.62470 * 6 4 3 8 8 N 1.47311 * 110.60045 * 161.45595 * 6 4 3 9 9 C 1.34522 * 106.61977 * 118.52797 * 8 6 4 10 10 O 1.21540 * 123.76784 * 180.02562 * 9 8 6 11 11 N 1.33786 * 112.45774 * 359.97438 * 9 8 6 12 12 C 1.46507 * 124.17462 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47485 * 90.02747 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.34763 * 111.64763 * 0.23599 * 11 9 8 24 24 O 1.21237 * 127.15871 * 179.73944 * 23 11 9 25 25 H 1.09008 * 109.47105 * 59.99753 * 1 2 3 26 26 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47503 * 300.00064 * 1 2 3 28 28 H 1.08997 * 109.47311 * 240.00439 * 2 1 3 29 29 H 1.09000 * 109.47025 * 119.99951 * 2 1 3 30 30 H 0.97003 * 126.68689 * 298.48590 * 8 6 4 31 31 H 1.09002 * 109.47280 * 330.02451 * 12 11 9 32 32 H 1.09001 * 109.46702 * 210.02644 * 12 11 9 33 33 H 1.09002 * 109.47103 * 59.99596 * 13 12 11 34 34 H 1.08998 * 109.46862 * 300.00408 * 13 12 11 35 35 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 36 36 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 37 37 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.3296 3.5954 0.6383 8 7 5.3267 2.9166 0.4402 9 6 6.0576 3.3848 -0.5875 10 8 7.2673 3.4996 -0.5591 11 7 5.3044 3.7089 -1.6446 12 6 5.8358 4.2439 -2.9007 13 6 6.1611 3.0889 -3.8499 14 6 6.7154 3.6477 -5.1619 15 6 7.0364 2.5099 -6.0966 16 1 6.8620 1.4904 -5.7861 17 6 7.5517 2.7708 -7.3486 18 7 7.8313 1.7779 -8.1644 19 14 7.8525 4.5343 -7.8859 20 1 9.2303 4.9390 -7.5072 21 1 7.6939 4.6369 -9.3588 22 1 6.8728 5.4290 -7.2190 23 6 3.9960 3.4878 -1.4092 24 8 3.0717 3.6865 -2.1682 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.6603 2.6231 1.3025 31 1 6.7424 4.8141 -2.6981 32 1 5.0927 4.8946 -3.3616 33 1 5.2544 2.5188 -4.0525 34 1 6.9041 2.4381 -3.3889 35 1 7.6219 4.2181 -4.9597 36 1 5.9720 4.2982 -5.6226 37 1 8.1941 1.9614 -9.0451 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277827566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:52 Heat of formation + Delta-G solvation = -155.882498 kcal Electronic energy + Delta-G solvation = -22475.510751 eV Core-core repulsion = 18832.106301 eV Total energy + Delta-G solvation = -3643.404450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.84286 -41.54888 -39.90125 -38.15824 -37.31709 -37.07111 -35.28523 -33.50739 -32.76925 -30.01199 -29.42583 -25.68625 -24.98014 -23.90589 -22.64071 -22.32571 -21.63404 -19.53212 -19.38404 -18.89210 -18.36307 -18.14370 -17.53255 -17.00455 -16.65372 -16.55319 -16.15265 -15.85871 -15.53879 -15.33742 -14.90301 -14.85595 -14.56544 -14.06542 -13.64708 -13.49385 -13.13485 -13.02812 -12.62403 -12.57739 -12.51943 -12.27965 -11.97065 -11.85261 -11.65876 -11.62155 -11.50248 -11.46073 -10.95423 -10.77930 -10.73046 -8.30706 -6.36737 0.08488 0.51793 1.10558 1.26910 1.38038 1.40650 1.52643 1.75623 1.94288 2.36930 2.64791 3.04632 3.19162 3.63179 3.84317 3.98072 3.99570 4.01690 4.15041 4.21160 4.31683 4.38945 4.70259 4.76336 4.85273 4.92586 4.92911 5.05171 5.32336 5.35758 5.45874 5.59152 5.61821 5.79963 6.03776 6.24313 6.32267 6.70376 6.87641 7.27670 8.86598 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004016 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.220968 B = 6970.643740 C = 7671.144147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.342 6.342 4 C 0.468 3.532 5 O -0.511 6.511 6 C 0.113 3.887 7 H 0.221 0.779 8 N -0.687 5.687 9 C 0.705 3.295 10 O -0.560 6.560 11 N -0.574 5.574 12 C 0.122 3.878 13 C -0.108 4.108 14 C -0.005 4.005 15 C -0.540 4.540 16 H 0.021 0.979 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.236 1.236 23 C 0.533 3.467 24 O -0.465 6.465 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.459 0.541 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.556 4.810 23.527 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.257 6.257 4 C 0.308 3.692 5 O -0.398 6.398 6 C 0.002 3.998 7 H 0.237 0.763 8 N -0.354 5.354 9 C 0.406 3.594 10 O -0.435 6.435 11 N -0.319 5.319 12 C 0.002 3.998 13 C -0.147 4.147 14 C -0.043 4.043 15 C -0.578 4.578 16 H 0.040 0.960 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.159 1.159 23 C 0.318 3.682 24 O -0.333 6.333 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.307 0.693 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.154 4.647 22.877 27.832 hybrid contribution 0.696 -0.535 -0.451 0.987 sum -14.458 4.112 22.426 26.998 Atomic orbital electron populations 1.21846 0.89986 1.04530 1.04047 1.23449 0.97407 0.78295 1.02949 1.86506 1.21996 1.34508 1.82725 1.23115 0.81964 0.91087 0.73045 1.90775 1.61205 1.42970 1.44867 1.21686 0.86832 0.94214 0.97020 0.76250 1.45124 1.04380 1.68594 1.17333 1.15924 0.85028 0.77950 0.80519 1.91033 1.11543 1.59186 1.81699 1.46495 1.08929 1.60116 1.16387 1.21946 1.01848 0.96322 0.79673 1.21628 0.99736 0.97420 0.95899 1.19428 0.96776 0.95756 0.92378 1.21446 1.42818 0.93398 1.00097 0.96010 1.26136 0.94327 1.02836 0.96294 1.70089 1.45801 1.34346 1.09184 0.85547 0.80038 0.79014 0.77393 1.19022 1.20968 1.15933 1.20414 0.82425 0.77111 0.88235 1.90873 1.40904 1.49223 1.52339 0.91764 0.88143 0.90164 0.92151 0.89754 0.69258 0.87298 0.86707 0.93836 0.94051 0.95184 0.94741 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.79 6.19 71.98 0.45 1.24 16 3 O -0.34 -6.22 10.22 -51.42 -0.53 -6.75 16 4 C 0.47 9.64 7.30 71.23 0.52 10.16 16 5 O -0.51 -13.98 16.35 21.94 0.36 -13.63 16 6 C 0.11 1.80 4.21 43.62 0.18 1.98 16 7 H 0.22 1.00 8.14 -2.39 -0.02 0.98 16 8 N -0.69 -12.17 5.84 -463.22 -2.71 -14.87 16 9 C 0.70 19.31 8.62 179.44 1.55 20.86 16 10 O -0.56 -19.62 17.48 -3.84 -0.07 -19.68 16 11 N -0.57 -16.02 2.60 -773.13 -2.01 -18.03 16 12 C 0.12 3.80 5.70 86.38 0.49 4.29 16 13 C -0.11 -4.50 5.48 30.59 0.17 -4.33 16 14 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 15 C -0.54 -32.55 9.66 25.60 0.25 -32.30 16 16 H 0.02 1.46 7.99 -2.91 -0.02 1.44 16 17 C 0.00 0.03 5.47 84.66 0.46 0.49 16 18 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 19 Si 0.96 44.56 27.47 68.60 1.88 46.44 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 23 C 0.53 13.09 7.64 87.94 0.67 13.76 16 24 O -0.46 -13.68 17.75 -2.90 -0.05 -13.73 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.46 5.59 8.96 -92.71 -0.83 4.76 16 31 H 0.11 3.18 7.86 -2.39 -0.02 3.16 16 32 H 0.11 3.14 8.00 -2.39 -0.02 3.13 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 36 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -82.60 328.04 2.99 -79.61 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.21 Total: 6.75 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 5.60 Total: 15.33 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -4.42 Total: -94.35 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.29 Total: -53.79 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -82.60 2.99 -79.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277827566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.276 kcal (2) G-P(sol) polarization free energy of solvation -82.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds