Wall clock time and date at job start Tue Mar 31 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00072 * 2 1 4 4 O 1.20821 * 120.00367 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99609 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 3 2 7 7 C 1.37098 * 120.00392 * 270.00289 * 6 5 3 8 8 H 1.08001 * 120.00022 * 35.87957 * 7 6 5 9 9 C 1.38952 * 120.00409 * 215.88060 * 7 6 5 10 10 N 1.31411 * 119.99665 * 22.34117 * 9 7 6 11 11 Si 1.86790 * 120.00291 * 202.34189 * 9 7 6 12 12 H 1.48494 * 109.47298 * 89.99771 * 11 9 7 13 13 H 1.48501 * 109.47096 * 210.00035 * 11 9 7 14 14 H 1.48501 * 109.47157 * 330.00055 * 11 9 7 15 15 C 1.34786 * 119.99962 * 89.99735 * 6 5 3 16 16 O 1.21291 * 119.99631 * 185.13829 * 15 6 5 17 17 C 1.50694 * 119.99856 * 5.14327 * 15 6 5 18 18 H 1.09006 * 109.12725 * 325.78400 * 17 15 6 19 19 C 1.52915 * 109.30470 * 85.26741 * 17 15 6 20 20 C 1.53346 * 108.67532 * 171.06315 * 19 17 15 21 21 C 1.53249 * 108.26455 * 292.28689 * 20 19 17 22 22 C 1.50174 * 109.79406 * 49.28153 * 21 20 19 23 23 O 1.21286 * 118.24575 * 162.23017 * 22 21 20 24 24 N 1.33351 * 123.50909 * 341.95147 * 22 21 20 25 25 H 1.08993 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47336 * 300.00261 * 1 2 3 27 27 H 1.09006 * 109.46891 * 59.99875 * 1 2 3 28 28 H 1.09002 * 109.47779 * 60.00075 * 5 3 2 29 29 H 1.08999 * 109.47746 * 299.99795 * 5 3 2 30 30 H 0.97000 * 120.00490 * 183.82778 * 10 9 7 31 31 H 1.08997 * 109.60287 * 290.82379 * 19 17 15 32 32 H 1.09007 * 109.60202 * 51.30620 * 19 17 15 33 33 H 1.08997 * 109.67186 * 52.21176 * 20 19 17 34 34 H 1.09004 * 109.66827 * 172.73507 * 20 19 17 35 35 H 1.08999 * 109.60331 * 289.08971 * 21 20 19 36 36 H 1.09004 * 109.29986 * 169.29064 * 21 20 19 37 37 H 0.97003 * 117.94689 * 182.50195 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.1766 3.3363 -1.1878 8 1 3.5418 3.1208 -2.0345 9 6 5.1910 4.2790 -1.3022 10 7 6.2154 4.2449 -0.4798 11 14 5.0984 5.5948 -2.6247 12 1 4.3909 6.7857 -2.0896 13 1 6.4721 5.9791 -3.0376 14 1 4.3585 5.0656 -3.7985 15 6 4.1723 3.3266 1.1668 16 8 4.4251 4.5129 1.1682 17 6 4.0715 2.5761 2.4696 18 1 3.3098 1.8018 2.3778 19 6 5.4190 1.9249 2.7835 20 6 5.3706 1.3580 4.2075 21 6 5.2904 2.5319 5.1893 22 6 4.2092 3.4814 4.7596 23 8 3.7867 4.2761 5.5726 24 7 3.6926 3.5011 3.5304 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9565 0.7804 -0.8891 29 1 3.9557 0.7808 0.8908 30 1 6.8955 4.9352 -0.5233 31 1 5.6093 1.1186 2.0751 32 1 6.2108 2.6708 2.7135 33 1 4.4937 0.7203 4.3189 34 1 6.2732 0.7788 4.4027 35 1 6.2456 3.0566 5.2107 36 1 5.0646 2.1531 6.1861 37 1 3.0228 4.1734 3.3295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337842670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:24 Heat of formation + Delta-G solvation = -164.757723 kcal Electronic energy + Delta-G solvation = -23799.269893 eV Core-core repulsion = 20155.480585 eV Total energy + Delta-G solvation = -3643.789308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84953 -41.22191 -39.93819 -37.54002 -37.19992 -36.06695 -34.07500 -33.79677 -30.92947 -30.01150 -27.81066 -27.08483 -25.35973 -23.70047 -22.46840 -21.43247 -20.05066 -18.92129 -18.66343 -18.39898 -17.94474 -17.40562 -17.10795 -17.07121 -16.59696 -16.10432 -15.70040 -15.26795 -15.04714 -14.61560 -14.48145 -14.42952 -14.34562 -13.87786 -13.43858 -13.02082 -12.92811 -12.87910 -12.84415 -12.73441 -12.39787 -12.10894 -11.92121 -11.84430 -11.72495 -11.64892 -11.11155 -10.86982 -10.46498 -9.93454 -9.29000 -8.29144 -5.98841 1.24925 1.35308 1.44637 1.47413 1.55588 1.63705 2.14421 2.24233 2.53131 2.97617 3.20359 3.61844 3.73595 3.83130 3.86033 4.04882 4.10996 4.20666 4.31273 4.37479 4.38716 4.57107 4.60557 4.75016 4.86272 4.87894 4.99214 5.11256 5.36257 5.40193 5.43908 5.59313 6.04954 6.34446 6.82193 6.89439 7.03638 7.13528 7.53865 8.16844 8.78466 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.008346 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.037667 B = 3354.241154 C = 5004.483405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.439 3.561 4 O -0.534 6.534 5 C 0.107 3.893 6 N -0.446 5.446 7 C -0.358 4.358 8 H 0.077 0.923 9 C 0.030 3.970 10 N -0.846 5.846 11 Si 0.956 3.044 12 H -0.301 1.301 13 H -0.278 1.278 14 H -0.256 1.256 15 C 0.459 3.541 16 O -0.570 6.570 17 C 0.133 3.867 18 H 0.099 0.901 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.129 4.129 22 C 0.514 3.486 23 O -0.614 6.614 24 N -0.697 5.697 25 H 0.139 0.861 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.260 0.740 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 -16.090 4.635 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.281 3.719 4 O -0.423 6.423 5 C -0.018 4.018 6 N -0.168 5.168 7 C -0.485 4.485 8 H 0.095 0.905 9 C -0.178 4.178 10 N -0.481 5.481 11 Si 0.782 3.218 12 H -0.229 1.229 13 H -0.203 1.203 14 H -0.180 1.180 15 C 0.247 3.753 16 O -0.449 6.449 17 C 0.024 3.976 18 H 0.117 0.883 19 C -0.159 4.159 20 C -0.145 4.145 21 C -0.169 4.169 22 C 0.303 3.697 23 O -0.498 6.498 24 N -0.345 5.345 25 H 0.157 0.843 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.747 -14.944 5.079 16.021 hybrid contribution -0.722 1.892 -1.070 2.290 sum -3.469 -13.052 4.010 14.088 Atomic orbital electron populations 1.23507 0.75443 1.05671 1.01933 1.86503 1.24467 1.32261 1.83944 1.25225 0.93680 0.81358 0.71609 1.90689 1.67711 1.37993 1.45882 1.21435 0.85811 0.86171 1.08400 1.43136 1.60538 1.08194 1.04891 1.19151 1.13931 1.24941 0.90497 0.90475 1.25654 0.93048 1.00161 0.98921 1.69932 1.08160 1.31486 1.38546 0.85527 0.77345 0.79502 0.79443 1.22867 1.20345 1.18001 1.20740 0.81650 0.87557 0.85397 1.90531 1.49935 1.17803 1.86647 1.21015 1.00450 0.91017 0.85068 0.88334 1.21871 0.93011 1.00928 1.00128 1.21750 1.05932 0.96319 0.90480 1.21774 0.96600 0.95934 1.02558 1.21100 0.83206 0.84760 0.80590 1.90688 1.63416 1.43839 1.51845 1.45418 1.42621 1.35419 1.11001 0.84299 0.92527 0.92920 0.84505 0.84078 0.93089 0.87179 0.92750 0.88913 0.86581 0.87686 0.85876 0.77881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -9.05 10.56 -51.41 -0.54 -9.59 16 3 C 0.44 14.56 7.73 71.23 0.55 15.11 16 4 O -0.53 -22.78 16.18 21.98 0.36 -22.42 16 5 C 0.11 3.44 5.60 85.63 0.48 3.92 16 6 N -0.45 -20.43 2.05 -639.60 -1.31 -21.74 16 7 C -0.36 -18.99 9.31 84.04 0.78 -18.20 16 8 H 0.08 4.04 7.93 -2.91 -0.02 4.02 16 9 C 0.03 1.66 4.26 84.93 0.36 2.02 16 10 N -0.85 -48.27 11.42 21.66 0.25 -48.02 16 11 Si 0.96 45.37 29.61 68.60 2.03 47.40 16 12 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 15 C 0.46 21.86 5.97 87.65 0.52 22.38 16 16 O -0.57 -33.65 13.95 -3.06 -0.04 -33.69 16 17 C 0.13 4.64 2.64 44.36 0.12 4.75 16 18 H 0.10 2.88 6.38 -2.38 -0.02 2.87 16 19 C -0.12 -3.31 5.15 30.68 0.16 -3.15 16 20 C -0.11 -1.93 6.04 30.79 0.19 -1.75 16 21 C -0.13 -3.03 6.03 29.77 0.18 -2.85 16 22 C 0.51 18.25 7.71 87.71 0.68 18.92 16 23 O -0.61 -26.68 17.78 -3.05 -0.05 -26.74 16 24 N -0.70 -26.33 4.80 -450.25 -2.16 -28.49 16 25 H 0.14 1.56 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 27 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 28 H 0.14 3.88 8.04 -2.39 -0.02 3.86 16 29 H 0.14 3.29 5.29 -2.39 -0.01 3.28 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.11 2.48 7.14 -2.39 -0.02 2.47 16 32 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 33 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 34 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.39 16.42 8.55 -92.71 -0.79 15.63 16 Total: -1.00 -82.67 315.37 4.05 -78.62 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.31 Total: 21.77 kcal Atomic # 6 Polarization: 37.70 SS G_CDS: 5.21 Total: 42.91 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.22 Total: -98.25 kcal Atomic # 8 Polarization: -92.16 SS G_CDS: -0.28 Total: -92.44 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -82.67 4.05 -78.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337842670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.142 kcal (2) G-P(sol) polarization free energy of solvation -82.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds