Wall clock time and date at job start Tue Mar 31 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 117.00444 * 2 1 4 4 O 1.20825 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00352 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47140 * 180.02562 * 5 3 2 7 7 C 1.37099 * 119.99718 * 264.44742 * 6 5 3 8 8 H 1.07998 * 120.00128 * 141.10751 * 7 6 5 9 9 C 1.38947 * 120.00159 * 321.10443 * 7 6 5 10 10 N 1.31417 * 119.99667 * 339.49264 * 9 7 6 11 11 Si 1.86797 * 120.00378 * 159.49806 * 9 7 6 12 12 H 1.48507 * 109.47291 * 89.99580 * 11 9 7 13 13 H 1.48493 * 109.47445 * 209.99919 * 11 9 7 14 14 H 1.48495 * 109.47018 * 330.00066 * 11 9 7 15 15 C 1.34778 * 120.00415 * 84.45128 * 6 5 3 16 16 O 1.21290 * 119.99516 * 5.78592 * 15 6 5 17 17 C 1.50694 * 119.99997 * 185.79664 * 15 6 5 18 18 H 1.08994 * 109.70567 * 36.36471 * 17 15 6 19 19 C 1.53349 * 109.67167 * 156.88482 * 17 15 6 20 20 C 1.52907 * 108.68555 * 187.25060 * 19 17 15 21 21 N 1.45758 * 110.49455 * 309.27314 * 20 19 17 22 22 C 1.33359 * 124.10442 * 19.03949 * 21 20 19 23 23 O 1.21283 * 118.23966 * 177.77436 * 22 21 20 24 24 C 1.50172 * 123.51052 * 357.79785 * 22 21 20 25 25 H 1.08997 * 109.47440 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46916 * 300.00057 * 1 2 3 27 27 H 1.09002 * 109.47105 * 59.99467 * 1 2 3 28 28 H 1.08994 * 109.47229 * 59.99690 * 5 3 2 29 29 H 1.09003 * 109.46811 * 299.99682 * 5 3 2 30 30 H 0.97001 * 119.99852 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.60622 * 307.01427 * 19 17 15 32 32 H 1.08999 * 109.60432 * 67.50628 * 19 17 15 33 33 H 1.09005 * 109.31186 * 188.95672 * 20 19 17 34 34 H 1.08990 * 109.28913 * 69.58042 * 20 19 17 35 35 H 0.97001 * 117.94992 * 199.05933 * 21 20 19 36 36 H 1.08995 * 109.40454 * 257.45408 * 24 22 21 37 37 H 1.09000 * 109.40208 * 137.71065 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.2858 3.3051 -1.1813 8 1 3.9902 4.3316 -1.3406 9 6 4.9743 2.6185 -2.1739 10 7 5.6780 1.5517 -1.8675 11 14 4.8999 3.2117 -3.9436 12 1 6.0038 4.1740 -4.1900 13 1 5.0400 2.0523 -4.8607 14 1 3.5966 3.8806 -4.1869 15 6 4.0652 3.3572 1.1623 16 8 3.8989 2.7782 2.2150 17 6 4.3647 4.8340 1.1536 18 1 3.8779 5.3027 0.2984 19 6 3.8547 5.4718 2.4515 20 6 4.0045 6.9897 2.3432 21 7 5.3568 7.3408 1.9279 22 6 6.2012 6.4941 1.3375 23 8 7.2887 6.9109 0.9990 24 6 5.8774 5.0525 1.0690 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.9557 0.7808 -0.8907 29 1 3.9564 0.7805 0.8892 30 1 6.1590 1.0726 -2.5603 31 1 2.8048 5.2173 2.5962 32 1 4.4416 5.1059 3.2940 33 1 3.7964 7.4425 3.3127 34 1 3.2925 7.3704 1.6110 35 1 5.6618 8.2469 2.0915 36 1 6.3757 4.4256 1.8084 37 1 6.2271 4.7824 0.0725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350150837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:47 Heat of formation + Delta-G solvation = -154.754780 kcal Electronic energy + Delta-G solvation = -23509.334779 eV Core-core repulsion = 19865.979231 eV Total energy + Delta-G solvation = -3643.355548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.20960 -39.72577 -38.44216 -36.11735 -35.65134 -34.81671 -32.64754 -31.71865 -29.37019 -28.71010 -26.61236 -25.21522 -24.18904 -22.64292 -20.61449 -19.31184 -18.82634 -17.48914 -17.02756 -16.72719 -16.46144 -15.82700 -15.76000 -15.38064 -14.96906 -14.68611 -14.27660 -14.02026 -13.69966 -13.25357 -13.03484 -12.96635 -12.76650 -12.36823 -11.84483 -11.60700 -11.44978 -11.38542 -11.32488 -11.00911 -10.89719 -10.54416 -10.50433 -10.31177 -10.27991 -9.80742 -9.68415 -9.28970 -8.88593 -8.59851 -7.75927 -6.56778 -4.26888 2.97920 2.98595 3.05900 3.13682 3.17590 3.21889 3.54194 3.76807 4.04939 4.45525 4.80419 4.97211 5.02836 5.27596 5.35118 5.40025 5.45873 5.55955 5.63305 5.66852 5.80195 5.86085 6.08510 6.15476 6.23887 6.35991 6.55585 6.60360 6.66862 6.95213 6.99404 7.31384 7.56299 7.64358 8.13498 8.49302 8.50323 8.89624 9.22972 9.66767 10.47736 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.007166 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.120707 B = 3906.208396 C = 5286.631282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.445 3.555 4 O -0.507 6.507 5 C 0.126 3.874 6 N -0.423 5.423 7 C -0.342 4.342 8 H 0.093 0.907 9 C 0.047 3.953 10 N -0.858 5.858 11 Si 0.911 3.089 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.496 3.504 16 O -0.595 6.595 17 C -0.088 4.088 18 H 0.097 0.903 19 C -0.118 4.118 20 C 0.113 3.887 21 N -0.724 5.724 22 C 0.527 3.473 23 O -0.564 6.564 24 C -0.117 4.117 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.274 0.726 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.098 0.902 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 2.884 3.518 7.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.287 3.713 4 O -0.393 6.393 5 C 0.000 4.000 6 N -0.142 5.142 7 C -0.470 4.470 8 H 0.110 0.890 9 C -0.160 4.160 10 N -0.493 5.493 11 Si 0.737 3.263 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.192 1.192 15 C 0.286 3.714 16 O -0.480 6.480 17 C -0.110 4.110 18 H 0.115 0.885 19 C -0.156 4.156 20 C -0.012 4.012 21 N -0.376 5.376 22 C 0.315 3.685 23 O -0.443 6.443 24 C -0.157 4.157 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.158 0.842 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.117 0.883 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.661 2.700 3.701 7.282 hybrid contribution -0.366 0.568 -0.989 1.198 sum -6.027 3.269 2.712 7.373 Atomic orbital electron populations 1.23097 0.78067 1.02666 1.01972 1.86552 1.22239 1.34827 1.84881 1.25375 0.93645 0.80856 0.71415 1.90564 1.67091 1.36422 1.45236 1.20930 0.83999 0.88041 1.07003 1.42965 1.56731 1.08527 1.05933 1.19362 1.36128 0.99330 0.92143 0.88980 1.25386 0.93503 0.96523 1.00605 1.69898 1.25828 1.19277 1.34325 0.86168 0.79249 0.78768 0.82110 1.19784 1.20509 1.19230 1.20182 0.79016 0.88768 0.83461 1.90543 1.55555 1.70412 1.31470 1.21073 0.96109 0.94830 0.98942 0.88522 1.21725 1.03291 0.92413 0.98210 1.21409 0.82950 0.96866 0.99955 1.45506 1.15354 1.14838 1.61892 1.20367 0.83599 0.88892 0.75636 1.90717 1.23441 1.77857 1.52334 1.21507 0.96018 0.91539 1.06616 0.88882 0.92526 0.92465 0.84227 0.88109 0.91547 0.89712 0.90412 0.90747 0.91712 0.77193 0.88343 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.88 10.56 -39.25 -0.41 -7.29 16 3 C 0.45 9.72 7.99 36.00 0.29 10.01 16 4 O -0.51 -12.08 16.05 -18.75 -0.30 -12.38 16 5 C 0.13 2.86 5.52 -5.20 -0.03 2.84 16 6 N -0.42 -10.06 2.06 -116.10 -0.24 -10.30 16 7 C -0.34 -8.19 7.97 -14.93 -0.12 -8.31 16 8 H 0.09 2.15 6.53 -52.49 -0.34 1.80 16 9 C 0.05 1.11 4.91 -17.47 -0.09 1.02 16 10 N -0.86 -21.02 11.60 55.50 0.64 -20.37 16 11 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 C 0.50 11.30 6.55 -10.99 -0.07 11.23 16 16 O -0.60 -14.63 15.87 5.55 0.09 -14.54 16 17 C -0.09 -1.64 1.88 -91.56 -0.17 -1.81 16 18 H 0.10 1.80 6.61 -51.93 -0.34 1.46 16 19 C -0.12 -1.79 4.71 -26.60 -0.13 -1.92 16 20 C 0.11 1.31 7.17 -4.49 -0.03 1.28 16 21 N -0.72 -9.84 5.45 -61.39 -0.33 -10.17 16 22 C 0.53 9.26 7.71 -11.87 -0.09 9.17 16 23 O -0.56 -11.82 17.78 5.56 0.10 -11.72 16 24 C -0.12 -2.17 5.24 -28.10 -0.15 -2.31 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.80 8.13 -51.92 -0.42 0.37 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.14 3.25 5.68 -51.93 -0.29 2.96 16 29 H 0.10 2.26 7.52 -51.93 -0.39 1.87 16 30 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 4.58 8.80 -40.82 -0.36 4.22 16 36 H 0.10 1.84 8.09 -51.93 -0.42 1.42 16 37 H 0.12 2.46 7.55 -51.93 -0.39 2.07 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -30.98 316.51 -4.87 -35.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.63 Total: 9.54 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 0.48 Total: 22.79 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.07 Total: -40.84 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.53 Total: -45.94 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.98 -4.87 -35.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350150837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.905 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds