Wall clock time and date at job start Tue Mar 31 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 117.00444 * 2 1 4 4 O 1.20825 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00352 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47140 * 180.02562 * 5 3 2 7 7 C 1.37099 * 119.99718 * 264.44742 * 6 5 3 8 8 H 1.07998 * 120.00128 * 141.10751 * 7 6 5 9 9 C 1.38947 * 120.00159 * 321.10443 * 7 6 5 10 10 N 1.31417 * 119.99667 * 339.49264 * 9 7 6 11 11 Si 1.86797 * 120.00378 * 159.49806 * 9 7 6 12 12 H 1.48507 * 109.47291 * 89.99580 * 11 9 7 13 13 H 1.48493 * 109.47445 * 209.99919 * 11 9 7 14 14 H 1.48495 * 109.47018 * 330.00066 * 11 9 7 15 15 C 1.34778 * 120.00415 * 84.45128 * 6 5 3 16 16 O 1.21290 * 119.99516 * 5.78592 * 15 6 5 17 17 C 1.50694 * 119.99997 * 185.79664 * 15 6 5 18 18 H 1.08994 * 109.70567 * 36.36471 * 17 15 6 19 19 C 1.53349 * 109.67167 * 156.88482 * 17 15 6 20 20 C 1.52907 * 108.68555 * 187.25060 * 19 17 15 21 21 N 1.45758 * 110.49455 * 309.27314 * 20 19 17 22 22 C 1.33359 * 124.10442 * 19.03949 * 21 20 19 23 23 O 1.21283 * 118.23966 * 177.77436 * 22 21 20 24 24 C 1.50172 * 123.51052 * 357.79785 * 22 21 20 25 25 H 1.08997 * 109.47440 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46916 * 300.00057 * 1 2 3 27 27 H 1.09002 * 109.47105 * 59.99467 * 1 2 3 28 28 H 1.08994 * 109.47229 * 59.99690 * 5 3 2 29 29 H 1.09003 * 109.46811 * 299.99682 * 5 3 2 30 30 H 0.97001 * 119.99852 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.60622 * 307.01427 * 19 17 15 32 32 H 1.08999 * 109.60432 * 67.50628 * 19 17 15 33 33 H 1.09005 * 109.31186 * 188.95672 * 20 19 17 34 34 H 1.08990 * 109.28913 * 69.58042 * 20 19 17 35 35 H 0.97001 * 117.94992 * 199.05933 * 21 20 19 36 36 H 1.08995 * 109.40454 * 257.45408 * 24 22 21 37 37 H 1.09000 * 109.40208 * 137.71065 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.2858 3.3051 -1.1813 8 1 3.9902 4.3316 -1.3406 9 6 4.9743 2.6185 -2.1739 10 7 5.6780 1.5517 -1.8675 11 14 4.8999 3.2117 -3.9436 12 1 6.0038 4.1740 -4.1900 13 1 5.0400 2.0523 -4.8607 14 1 3.5966 3.8806 -4.1869 15 6 4.0652 3.3572 1.1623 16 8 3.8989 2.7782 2.2150 17 6 4.3647 4.8340 1.1536 18 1 3.8779 5.3027 0.2984 19 6 3.8547 5.4718 2.4515 20 6 4.0045 6.9897 2.3432 21 7 5.3568 7.3408 1.9279 22 6 6.2012 6.4941 1.3375 23 8 7.2887 6.9109 0.9990 24 6 5.8774 5.0525 1.0690 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.9557 0.7808 -0.8907 29 1 3.9564 0.7805 0.8892 30 1 6.1590 1.0726 -2.5603 31 1 2.8048 5.2173 2.5962 32 1 4.4416 5.1059 3.2940 33 1 3.7964 7.4425 3.3127 34 1 3.2925 7.3704 1.6110 35 1 5.6618 8.2469 2.0915 36 1 6.3757 4.4256 1.8084 37 1 6.2271 4.7824 0.0725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350150837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:46 Heat of formation + Delta-G solvation = -176.230273 kcal Electronic energy + Delta-G solvation = -23510.266026 eV Core-core repulsion = 19865.979231 eV Total energy + Delta-G solvation = -3644.286795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77539 -41.26890 -40.10541 -37.64545 -37.16343 -36.62228 -34.06664 -33.55811 -30.71025 -30.28903 -28.01099 -26.97051 -25.63524 -23.99889 -22.22684 -21.08563 -20.17691 -19.06405 -18.70875 -18.16502 -18.12493 -17.36250 -17.18457 -17.01086 -16.43871 -16.37967 -15.89315 -15.54683 -15.02590 -14.78034 -14.53287 -14.39500 -14.29106 -13.98469 -13.47059 -13.18858 -12.93150 -12.84247 -12.73371 -12.70477 -12.58392 -12.13653 -11.93745 -11.81786 -11.77239 -11.55795 -11.26344 -11.04440 -10.34865 -10.04737 -9.60406 -8.39322 -6.14372 1.24842 1.40136 1.47399 1.52942 1.57420 1.59880 2.03506 2.32812 2.37615 2.81756 3.01703 3.65682 3.83799 3.88092 3.93398 4.07592 4.28567 4.32373 4.32486 4.34603 4.49803 4.56120 4.65955 4.76874 4.81509 4.87032 4.93812 5.09922 5.28753 5.34476 5.46901 5.84280 5.89832 6.28240 6.29154 6.81025 7.05271 7.20627 7.41920 7.85505 8.66103 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.007166 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.120707 B = 3906.208396 C = 5286.631282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.451 3.549 4 O -0.530 6.530 5 C 0.123 3.877 6 N -0.435 5.435 7 C -0.353 4.353 8 H 0.095 0.905 9 C 0.012 3.988 10 N -0.883 5.883 11 Si 0.969 3.031 12 H -0.272 1.272 13 H -0.276 1.276 14 H -0.267 1.267 15 C 0.484 3.516 16 O -0.620 6.620 17 C -0.082 4.082 18 H 0.097 0.903 19 C -0.114 4.114 20 C 0.116 3.884 21 N -0.705 5.705 22 C 0.531 3.469 23 O -0.603 6.603 24 C -0.109 4.109 25 H 0.137 0.863 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.277 0.723 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.409 0.591 36 H 0.090 0.910 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 4.014 3.578 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.294 3.706 4 O -0.419 6.419 5 C -0.003 4.003 6 N -0.153 5.153 7 C -0.480 4.480 8 H 0.113 0.887 9 C -0.192 4.192 10 N -0.519 5.519 11 Si 0.793 3.207 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.191 1.191 15 C 0.275 3.725 16 O -0.507 6.507 17 C -0.104 4.104 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.007 4.007 21 N -0.356 5.356 22 C 0.318 3.682 23 O -0.485 6.485 24 C -0.150 4.150 25 H 0.155 0.845 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.104 3.833 3.780 8.913 hybrid contribution -0.025 0.103 -0.950 0.956 sum -7.129 3.936 2.829 8.621 Atomic orbital electron populations 1.23529 0.75111 1.05675 1.02179 1.86513 1.25003 1.32832 1.84110 1.25005 0.93256 0.81391 0.70980 1.90539 1.67497 1.37347 1.46539 1.20842 0.85193 0.87918 1.06316 1.43186 1.56921 1.08833 1.06346 1.19553 1.36356 0.99675 0.92428 0.88735 1.26058 0.93017 0.96651 1.03500 1.69967 1.26427 1.20206 1.35324 0.85289 0.79002 0.78273 0.78112 1.19743 1.20122 1.19089 1.20933 0.78297 0.90460 0.82847 1.90507 1.56661 1.71389 1.32116 1.21076 0.96041 0.92187 1.01067 0.88500 1.21714 1.02948 0.94804 0.95772 1.21607 0.81859 0.94273 1.02922 1.45365 1.15495 1.14866 1.59873 1.20030 0.83586 0.88567 0.75972 1.90701 1.25162 1.78299 1.54386 1.21325 0.95914 0.92779 1.04958 0.84505 0.92396 0.92243 0.85024 0.88643 0.91312 0.89613 0.91074 0.86450 0.89657 0.75399 0.89185 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.37 -13.46 10.56 -51.38 -0.54 -14.01 16 3 C 0.45 19.79 7.99 71.24 0.57 20.36 16 4 O -0.53 -25.30 16.05 21.97 0.35 -24.95 16 5 C 0.12 5.74 5.52 85.63 0.47 6.21 16 6 N -0.43 -21.11 2.06 -639.63 -1.32 -22.43 16 7 C -0.35 -17.11 7.97 84.04 0.67 -16.44 16 8 H 0.10 4.44 6.53 -2.91 -0.02 4.42 16 9 C 0.01 0.58 4.91 84.92 0.42 1.00 16 10 N -0.88 -43.98 11.60 21.66 0.25 -43.73 16 11 Si 0.97 38.62 29.60 68.60 2.03 40.65 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 15 C 0.48 22.44 6.55 87.65 0.57 23.01 16 16 O -0.62 -31.08 15.87 -3.06 -0.05 -31.13 16 17 C -0.08 -3.05 1.88 -11.40 -0.02 -3.08 16 18 H 0.10 3.57 6.61 -2.39 -0.02 3.55 16 19 C -0.11 -3.27 4.71 30.68 0.14 -3.13 16 20 C 0.12 2.28 7.17 86.49 0.62 2.90 16 21 N -0.70 -17.24 5.45 -467.33 -2.55 -19.78 16 22 C 0.53 18.24 7.71 87.71 0.68 18.92 16 23 O -0.60 -25.13 17.78 -3.04 -0.05 -25.19 16 24 C -0.11 -4.12 5.24 29.71 0.16 -3.97 16 25 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 27 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 28 H 0.13 6.32 5.68 -2.39 -0.01 6.31 16 29 H 0.10 4.45 7.52 -2.39 -0.02 4.43 16 30 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 33 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 8.16 8.80 -92.71 -0.82 7.35 16 36 H 0.09 3.49 8.09 -2.39 -0.02 3.48 16 37 H 0.10 4.06 7.55 -2.39 -0.02 4.04 16 Total: -1.00 -67.90 316.51 3.90 -64.01 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.29 Total: 28.82 kcal Atomic # 6 Polarization: 42.26 SS G_CDS: 5.47 Total: 47.73 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.61 Total: -85.94 kcal Atomic # 8 Polarization: -94.98 SS G_CDS: -0.29 Total: -95.27 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -67.90 3.90 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350150837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.221 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds