Wall clock time and date at job start Tue Mar 31 2020 03:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99406 * 2 1 4 4 O 1.20822 * 120.00557 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99610 * 179.72373 * 3 2 1 6 6 H 1.09004 * 109.71535 * 324.74598 * 5 3 2 7 7 C 1.52987 * 109.72079 * 204.09158 * 5 3 2 8 8 N 1.45643 * 110.78045 * 193.61825 * 7 5 3 9 9 C 1.33381 * 124.59305 * 21.85953 * 8 7 5 10 10 O 1.21276 * 118.49044 * 175.70510 * 9 8 7 11 11 C 1.50438 * 123.01838 * 355.72514 * 9 8 7 12 12 N 1.47047 * 108.89443 * 12.68798 * 11 9 8 13 13 C 1.34778 * 121.35413 * 137.24196 * 12 11 9 14 14 O 1.21281 * 120.00006 * 185.42071 * 13 12 11 15 15 C 1.50698 * 120.00243 * 5.41717 * 13 12 11 16 16 C 1.52998 * 109.47235 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47235 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00188 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00221 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99985 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47022 * 89.99949 * 21 19 17 23 23 H 1.48509 * 109.47123 * 209.99888 * 21 19 17 24 24 H 1.48501 * 109.47173 * 330.00118 * 21 19 17 25 25 H 1.08989 * 109.47343 * 299.99843 * 1 2 3 26 26 H 1.09005 * 109.47219 * 60.00281 * 1 2 3 27 27 H 1.09004 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.21596 * 313.93237 * 7 5 3 29 29 H 1.08993 * 109.21838 * 73.26212 * 7 5 3 30 30 H 0.96992 * 117.70176 * 201.87790 * 8 7 5 31 31 H 1.09005 * 109.57182 * 252.86436 * 11 9 8 32 32 H 1.09001 * 109.66541 * 132.57180 * 11 9 8 33 33 H 1.09002 * 109.46959 * 300.00160 * 15 13 12 34 34 H 1.08999 * 109.46875 * 60.00071 * 15 13 12 35 35 H 1.09002 * 109.47050 * 299.99826 * 16 15 13 36 36 H 1.08999 * 109.47357 * 60.00089 * 16 15 13 37 37 H 0.96995 * 120.00286 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0063 6 1 3.9748 0.4588 0.6021 7 6 4.0104 2.6162 0.5931 8 7 5.4210 2.8570 0.3222 9 6 6.1135 2.2767 -0.6589 10 8 7.2642 2.6171 -0.8346 11 6 5.5327 1.2196 -1.5580 12 7 4.0743 1.1860 -1.3731 13 6 3.2366 1.0785 -2.4234 14 8 2.0380 1.1519 -2.2531 15 6 3.7891 0.8673 -3.8095 16 6 2.6354 0.7804 -4.8106 17 6 3.1880 0.5698 -6.1967 18 1 4.2553 0.5040 -6.3483 19 6 2.3310 0.4600 -7.2712 20 7 2.8132 0.2756 -8.4808 21 14 0.4850 0.5715 -7.0087 22 1 0.0530 1.9874 -7.1264 23 1 -0.2113 -0.2454 -8.0350 24 1 0.1456 0.0613 -5.6560 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.4184 3.4162 0.1484 29 1 3.8482 2.6076 1.6709 30 1 5.8898 3.4832 0.8958 31 1 5.9558 0.2485 -1.3004 32 1 5.7637 1.4543 -2.5970 33 1 4.4368 1.7032 -4.0737 34 1 4.3629 -0.0591 -3.8345 35 1 1.9874 -0.0553 -4.5466 36 1 2.0619 1.7070 -4.7855 37 1 2.2103 0.1980 -9.2367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487556599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:03 Heat of formation + Delta-G solvation = -141.263171 kcal Electronic energy + Delta-G solvation = -23353.273371 eV Core-core repulsion = 19710.502863 eV Total energy + Delta-G solvation = -3642.770508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.46826 -39.97012 -39.07028 -36.92277 -36.11218 -34.55310 -33.65767 -31.71470 -30.76029 -27.88424 -27.66170 -26.25946 -24.60763 -22.07563 -21.18712 -20.25689 -19.04084 -18.20994 -17.71660 -17.25950 -16.83769 -16.61058 -16.22582 -15.81968 -15.56080 -15.20129 -15.08495 -14.15021 -14.01302 -13.90082 -13.63579 -13.09184 -13.01246 -12.70714 -12.61330 -12.55270 -12.33946 -11.93067 -11.49382 -11.05999 -10.68184 -10.64971 -10.45429 -10.27761 -10.15355 -9.88100 -9.56752 -9.47259 -9.26480 -9.03040 -8.56561 -6.08360 -4.08092 1.91572 2.24725 2.39365 2.65210 2.85789 3.03754 3.33363 3.40267 3.48985 4.02169 4.14453 4.45222 4.51973 4.59289 4.80857 4.93477 4.96614 5.11455 5.16963 5.26744 5.32361 5.41129 5.64009 5.76791 5.86979 5.94470 6.34919 6.46042 6.49141 6.84997 7.03271 7.23609 7.30498 7.69703 7.76369 7.80909 8.09933 8.45070 8.93756 9.53903 11.04291 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.005772 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.377729 B = 4850.076064 C = 6297.423374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.353 6.353 3 C 0.489 3.511 4 O -0.502 6.502 5 C 0.135 3.865 6 H 0.114 0.886 7 C 0.108 3.892 8 N -0.714 5.714 9 C 0.513 3.487 10 O -0.541 6.541 11 C 0.100 3.900 12 N -0.621 5.621 13 C 0.518 3.482 14 O -0.502 6.502 15 C -0.117 4.117 16 C 0.002 3.998 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.405 0.595 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 0.354 21.980 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.269 6.269 3 C 0.332 3.668 4 O -0.390 6.390 5 C 0.030 3.970 6 H 0.132 0.868 7 C -0.017 4.017 8 N -0.367 5.367 9 C 0.299 3.701 10 O -0.418 6.418 11 C -0.025 4.025 12 N -0.363 5.363 13 C 0.310 3.690 14 O -0.377 6.377 15 C -0.157 4.157 16 C -0.036 4.036 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.241 0.759 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.481 0.666 21.597 21.658 hybrid contribution -0.986 0.321 0.288 1.076 sum 0.495 0.987 21.885 21.913 Atomic orbital electron populations 1.23176 0.75801 1.03269 1.02517 1.86370 1.23786 1.32580 1.84197 1.22067 0.89860 0.82317 0.72582 1.90651 1.66154 1.36160 1.46029 1.20991 0.90164 0.99626 0.86216 0.86839 1.21590 0.81834 0.96733 1.01566 1.45279 1.11128 1.46702 1.33612 1.20342 0.86199 0.82683 0.80860 1.90826 1.17725 1.62903 1.70313 1.22007 0.78850 0.99037 1.02601 1.48602 1.06930 1.76569 1.04163 1.21952 0.86391 0.73504 0.87173 1.90609 1.15415 1.49232 1.82434 1.21763 1.02309 1.03490 0.88106 1.19398 0.92913 0.97738 0.93529 1.21053 0.95394 1.50537 0.89529 0.90757 1.24951 0.98855 0.94250 0.95001 1.69903 1.35331 1.49760 0.98916 0.86813 0.85826 0.78510 0.78476 1.20239 1.21360 1.18637 0.92454 0.91251 0.88496 0.89045 0.88602 0.75864 0.86944 0.84736 0.89022 0.88652 0.95662 0.96196 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.56 101.05 1.07 1.63 16 2 O -0.35 -5.02 9.99 -46.04 -0.46 -5.48 16 3 C 0.49 7.01 4.31 36.01 0.16 7.16 16 4 O -0.50 -8.46 15.02 -25.70 -0.39 -8.85 16 5 C 0.14 1.46 3.46 -68.67 -0.24 1.22 16 6 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 7 C 0.11 0.94 6.46 -4.51 -0.03 0.91 16 8 N -0.71 -6.25 5.42 -61.33 -0.33 -6.58 16 9 C 0.51 5.71 7.84 -11.73 -0.09 5.61 16 10 O -0.54 -7.84 17.80 5.56 0.10 -7.74 16 11 C 0.10 1.02 6.37 -5.02 -0.03 0.99 16 12 N -0.62 -7.83 2.98 -167.91 -0.50 -8.33 16 13 C 0.52 8.76 7.63 -10.99 -0.08 8.68 16 14 O -0.50 -10.19 12.19 -24.35 -0.30 -10.49 16 15 C -0.12 -2.11 4.24 -27.88 -0.12 -2.23 16 16 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 17 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 21 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 25 H 0.06 0.60 8.13 -51.94 -0.42 0.17 16 26 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.99 7.34 -51.93 -0.38 0.61 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.40 2.87 8.80 -40.82 -0.36 2.51 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.13 1.38 6.25 -51.93 -0.32 1.06 16 33 H 0.09 1.53 7.37 -51.93 -0.38 1.15 16 34 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.03 0.62 7.15 -51.93 -0.37 0.25 16 36 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -36.77 312.60 -5.71 -42.48 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.75 Total: -1.45 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 0.11 Total: 10.96 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.06 Total: -41.61 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.04 Total: -32.56 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.77 -5.71 -42.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487556599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.784 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds