Wall clock time and date at job start Tue Mar 31 2020 03:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99406 * 2 1 4 4 O 1.20822 * 120.00557 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99610 * 179.72373 * 3 2 1 6 6 H 1.09004 * 109.71535 * 324.74598 * 5 3 2 7 7 C 1.52987 * 109.72079 * 204.09158 * 5 3 2 8 8 N 1.45643 * 110.78045 * 193.61825 * 7 5 3 9 9 C 1.33381 * 124.59305 * 21.85953 * 8 7 5 10 10 O 1.21276 * 118.49044 * 175.70510 * 9 8 7 11 11 C 1.50438 * 123.01838 * 355.72514 * 9 8 7 12 12 N 1.47047 * 108.89443 * 12.68798 * 11 9 8 13 13 C 1.34778 * 121.35413 * 137.24196 * 12 11 9 14 14 O 1.21281 * 120.00006 * 185.42071 * 13 12 11 15 15 C 1.50698 * 120.00243 * 5.41717 * 13 12 11 16 16 C 1.52998 * 109.47235 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47235 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00188 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00221 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99985 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47022 * 89.99949 * 21 19 17 23 23 H 1.48509 * 109.47123 * 209.99888 * 21 19 17 24 24 H 1.48501 * 109.47173 * 330.00118 * 21 19 17 25 25 H 1.08989 * 109.47343 * 299.99843 * 1 2 3 26 26 H 1.09005 * 109.47219 * 60.00281 * 1 2 3 27 27 H 1.09004 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.21596 * 313.93237 * 7 5 3 29 29 H 1.08993 * 109.21838 * 73.26212 * 7 5 3 30 30 H 0.96992 * 117.70176 * 201.87790 * 8 7 5 31 31 H 1.09005 * 109.57182 * 252.86436 * 11 9 8 32 32 H 1.09001 * 109.66541 * 132.57180 * 11 9 8 33 33 H 1.09002 * 109.46959 * 300.00160 * 15 13 12 34 34 H 1.08999 * 109.46875 * 60.00071 * 15 13 12 35 35 H 1.09002 * 109.47050 * 299.99826 * 16 15 13 36 36 H 1.08999 * 109.47357 * 60.00089 * 16 15 13 37 37 H 0.96995 * 120.00286 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0063 6 1 3.9748 0.4588 0.6021 7 6 4.0104 2.6162 0.5931 8 7 5.4210 2.8570 0.3222 9 6 6.1135 2.2767 -0.6589 10 8 7.2642 2.6171 -0.8346 11 6 5.5327 1.2196 -1.5580 12 7 4.0743 1.1860 -1.3731 13 6 3.2366 1.0785 -2.4234 14 8 2.0380 1.1519 -2.2531 15 6 3.7891 0.8673 -3.8095 16 6 2.6354 0.7804 -4.8106 17 6 3.1880 0.5698 -6.1967 18 1 4.2553 0.5040 -6.3483 19 6 2.3310 0.4600 -7.2712 20 7 2.8132 0.2756 -8.4808 21 14 0.4850 0.5715 -7.0087 22 1 0.0530 1.9874 -7.1264 23 1 -0.2113 -0.2454 -8.0350 24 1 0.1456 0.0613 -5.6560 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.4184 3.4162 0.1484 29 1 3.8482 2.6076 1.6709 30 1 5.8898 3.4832 0.8958 31 1 5.9558 0.2485 -1.3004 32 1 5.7637 1.4543 -2.5970 33 1 4.4368 1.7032 -4.0737 34 1 4.3629 -0.0591 -3.8345 35 1 1.9874 -0.0553 -4.5466 36 1 2.0619 1.7070 -4.7855 37 1 2.2103 0.1980 -9.2367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487556599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:03 Heat of formation + Delta-G solvation = -168.956698 kcal Electronic energy + Delta-G solvation = -23354.474253 eV Core-core repulsion = 19710.502863 eV Total energy + Delta-G solvation = -3643.971389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.50281 -40.95042 -40.27792 -37.95337 -37.20784 -35.67414 -35.44183 -33.45393 -31.90906 -29.02786 -28.65197 -27.75195 -25.62200 -23.58002 -22.32952 -21.54712 -20.06612 -19.49855 -18.90304 -18.47596 -18.17558 -17.67657 -17.29950 -16.92808 -16.66810 -16.30242 -16.23223 -16.05175 -15.17316 -15.03579 -14.72680 -14.64474 -14.14403 -14.07244 -13.96057 -13.58057 -13.38738 -13.18597 -12.95572 -12.85237 -12.15365 -12.01327 -11.79858 -11.71565 -11.65090 -11.54744 -11.41099 -10.90572 -10.79057 -10.30996 -10.02953 -8.31886 -6.34765 0.87345 1.31551 1.32069 1.34148 1.39816 1.47455 1.52346 1.84203 2.20611 2.33366 3.04120 3.16993 3.30903 3.57036 3.77284 3.83847 4.00666 4.25465 4.30024 4.30616 4.37704 4.40154 4.42502 4.67035 4.69730 4.83997 4.97635 5.31169 5.39963 5.46114 5.58066 5.65022 5.86153 6.05776 6.22652 6.69496 6.72937 6.86940 6.99458 7.30633 8.83703 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.005772 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.377729 B = 4850.076064 C = 6297.423374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.361 6.361 3 C 0.484 3.516 4 O -0.534 6.534 5 C 0.133 3.867 6 H 0.156 0.844 7 C 0.115 3.885 8 N -0.701 5.701 9 C 0.516 3.484 10 O -0.578 6.578 11 C 0.098 3.902 12 N -0.611 5.611 13 C 0.520 3.480 14 O -0.544 6.544 15 C -0.112 4.112 16 C 0.007 3.993 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.935 3.065 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.259 1.259 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.137 0.863 30 H 0.415 0.585 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.014 0.986 36 H 0.005 0.995 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -0.124 24.385 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.276 6.276 3 C 0.329 3.671 4 O -0.424 6.424 5 C 0.029 3.971 6 H 0.173 0.827 7 C -0.010 4.010 8 N -0.353 5.353 9 C 0.302 3.698 10 O -0.458 6.458 11 C -0.026 4.026 12 N -0.350 5.350 13 C 0.312 3.688 14 O -0.422 6.422 15 C -0.151 4.151 16 C -0.031 4.031 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.760 3.240 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.183 1.183 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.254 0.746 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.033 0.967 36 H 0.023 0.977 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.811 0.192 24.055 24.124 hybrid contribution -1.040 0.476 -0.409 1.214 sum 0.771 0.667 23.646 23.668 Atomic orbital electron populations 1.23329 0.75093 1.04943 1.01744 1.86365 1.24686 1.32695 1.83896 1.22722 0.91225 0.81816 0.71385 1.90632 1.67284 1.37120 1.47329 1.21377 0.88002 1.02361 0.85374 0.82670 1.21616 0.80989 0.94720 1.03690 1.45188 1.11035 1.46154 1.32947 1.20409 0.85732 0.82637 0.81009 1.90826 1.19339 1.64188 1.71422 1.22248 0.77015 1.00684 1.02634 1.48400 1.07559 1.74898 1.04183 1.21514 0.86054 0.73670 0.87606 1.90613 1.17006 1.51301 1.83255 1.21559 1.00315 1.05249 0.87974 1.19216 0.94564 0.96318 0.93007 1.21403 0.94586 1.49067 0.91489 0.92814 1.25755 1.03190 0.94375 0.94883 1.70016 1.36909 1.51542 0.99824 0.85883 0.80919 0.78640 0.78566 1.19921 1.20394 1.18315 0.90895 0.94325 0.85677 0.91265 0.84500 0.74643 0.83402 0.84840 0.87805 0.86546 0.96736 0.97682 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.56 113.37 1.20 2.18 16 2 O -0.36 -9.66 9.99 -44.97 -0.45 -10.11 16 3 C 0.48 13.05 4.31 71.24 0.31 13.36 16 4 O -0.53 -17.64 15.02 28.62 0.43 -17.21 16 5 C 0.13 2.45 3.46 44.10 0.15 2.60 16 6 H 0.16 1.64 8.14 -2.38 -0.02 1.63 16 7 C 0.12 1.62 6.46 86.54 0.56 2.18 16 8 N -0.70 -10.07 5.42 -467.11 -2.53 -12.60 16 9 C 0.52 10.05 7.84 87.79 0.69 10.73 16 10 O -0.58 -15.65 17.80 -3.02 -0.05 -15.70 16 11 C 0.10 1.68 6.37 85.45 0.54 2.23 16 12 N -0.61 -13.78 2.98 -803.55 -2.39 -16.17 16 13 C 0.52 16.87 7.63 87.66 0.67 17.54 16 14 O -0.54 -21.84 12.19 25.56 0.31 -21.53 16 15 C -0.11 -3.89 4.24 29.85 0.13 -3.76 16 16 C 0.01 0.33 3.33 29.85 0.10 0.43 16 17 C -0.53 -29.50 9.66 25.60 0.25 -29.25 16 18 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 19 C 0.02 0.93 5.47 84.65 0.46 1.39 16 20 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 21 Si 0.93 46.07 27.47 68.60 1.88 47.95 16 22 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 25 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 26 H 0.04 1.13 8.13 -2.38 -0.02 1.11 16 27 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 1.37 7.34 -2.38 -0.02 1.36 16 29 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.42 4.61 8.80 -92.71 -0.82 3.80 16 31 H 0.15 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.13 2.41 6.25 -2.39 -0.01 2.39 16 33 H 0.10 3.34 7.37 -2.39 -0.02 3.32 16 34 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.01 0.71 7.15 -2.39 -0.02 0.69 16 36 H 0.00 0.24 7.53 -2.39 -0.02 0.22 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.64 312.60 2.78 -78.86 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.23 Total: 4.89 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 5.05 Total: 19.62 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -4.63 Total: -86.77 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: 0.24 Total: -64.55 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.95 kcal Total: -81.64 2.78 -78.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487556599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.096 kcal (2) G-P(sol) polarization free energy of solvation -81.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds