Wall clock time and date at job start Tue Mar 31 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 N 1.46498 * 109.47185 * 180.02562 * 16 15 13 18 18 C 1.47096 * 125.56351 * 89.99332 * 17 16 15 19 19 C 1.54091 * 103.77617 * 179.97438 * 18 17 16 20 20 O 1.45704 * 104.00789 * 0.02562 * 19 18 17 21 21 C 1.33772 * 109.47660 * 359.75445 * 20 19 18 22 22 O 1.21510 * 123.06584 * 180.24551 * 21 20 19 23 23 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 26 26 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 27 27 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 28 28 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 29 29 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 30 30 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 31 31 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 32 32 H 1.08992 * 110.56210 * 298.55265 * 18 17 16 33 33 H 1.08995 * 110.55814 * 61.41071 * 18 17 16 34 34 H 1.08994 * 110.51765 * 118.63194 * 19 18 17 35 35 H 1.08999 * 110.52199 * 241.23590 * 19 18 17 36 36 H 1.09001 * 113.77016 * 221.05654 * 23 12 11 37 37 H 1.09005 * 113.86980 * 89.67729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 7 -1.3507 -7.4741 3.7123 18 6 -2.7990 -7.6090 3.4933 19 6 -3.3680 -7.8035 4.9120 20 8 -2.1932 -7.7577 5.7726 21 6 -1.0993 -7.5750 5.0246 22 8 0.0197 -7.5040 5.4929 23 6 2.1615 -3.7405 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3764 -1.7802 -0.9678 26 1 1.3966 -2.5373 2.2104 27 1 -0.2731 -2.8605 1.5670 28 1 0.1879 -5.3004 3.3596 29 1 -1.0946 -5.3215 2.1255 30 1 -0.6840 -7.7370 1.7414 31 1 0.5985 -7.7151 2.9756 32 1 -3.2034 -6.7044 3.0392 33 1 -3.0128 -8.4789 2.8725 34 1 -4.0559 -6.9958 5.1618 35 1 -3.8675 -8.7688 4.9943 36 1 2.1758 -4.2745 -0.9513 37 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492292631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:24 Heat of formation + Delta-G solvation = -114.624820 kcal Electronic energy + Delta-G solvation = -22456.788444 eV Core-core repulsion = 18815.173061 eV Total energy + Delta-G solvation = -3641.615382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68809 -39.57986 -37.64659 -37.24676 -35.85704 -33.99228 -32.24090 -31.85127 -29.71974 -28.47522 -25.79464 -25.30311 -24.23131 -23.71286 -21.02092 -20.01644 -18.35844 -17.71904 -17.37225 -17.30481 -17.00039 -16.13262 -15.56291 -15.47439 -15.00592 -14.78599 -14.33599 -14.20724 -13.92603 -13.76930 -13.61111 -12.91105 -12.66480 -12.52114 -12.29833 -12.12829 -11.94285 -11.58105 -11.19960 -11.10274 -11.05949 -10.91019 -10.68933 -10.56635 -10.33128 -9.71929 -9.36739 -9.08000 -8.79510 -8.46904 -7.89689 -6.43322 -4.53364 2.22740 2.59997 3.11738 3.14619 3.20249 3.21860 3.24000 3.57121 3.86728 4.16069 4.34446 4.46976 4.79390 4.88886 4.92933 4.96678 5.02067 5.18509 5.31956 5.48234 5.58295 5.87024 5.88905 5.93174 6.14223 6.24900 6.32760 6.47719 6.56730 6.62668 7.05582 7.17315 7.59580 7.78062 7.88322 8.42491 8.49596 8.66363 9.17891 9.40680 10.63428 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.003549 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.172166 B = 7887.653467 C = 8223.625286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.076 3.924 12 N -0.631 5.631 13 C 0.534 3.466 14 O -0.568 6.568 15 C -0.153 4.153 16 C 0.165 3.835 17 N -0.630 5.630 18 C 0.062 3.938 19 C 0.041 3.959 20 O -0.331 6.331 21 C 0.641 3.359 22 O -0.519 6.519 23 C 0.112 3.888 24 H 0.274 0.726 25 H 0.392 0.608 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -9.942 5.955 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.046 4.046 12 N -0.364 5.364 13 C 0.322 3.678 14 O -0.449 6.449 15 C -0.194 4.194 16 C 0.044 3.956 17 N -0.378 5.378 18 C -0.061 4.061 19 C -0.034 4.034 20 O -0.241 6.241 21 C 0.395 3.605 22 O -0.403 6.403 23 C -0.010 4.010 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.418 -11.048 6.078 15.161 hybrid contribution -0.149 1.562 0.152 1.576 sum -8.568 -9.486 6.230 14.220 Atomic orbital electron populations 1.69304 1.06208 1.28300 1.50195 1.25062 0.95023 0.99894 0.92974 0.86375 0.79510 0.81544 0.79034 1.20988 1.19859 1.19826 1.21488 0.93959 0.89996 1.52149 0.91054 1.19835 0.85441 0.91231 0.83765 1.86053 1.45205 1.50514 1.56794 1.24348 0.99961 0.77664 1.02665 1.50178 1.41810 1.04690 1.39683 1.19862 0.83158 0.81822 0.82925 1.90646 1.56808 1.40156 1.57258 1.21933 0.99955 0.98132 0.99428 1.21064 0.90916 0.94963 0.88650 1.48160 1.07880 1.75051 1.06688 1.22851 0.81093 1.04477 0.97717 1.24283 0.86962 1.05136 0.86975 1.87282 1.16683 1.86102 1.34043 1.18524 0.84579 0.76514 0.80926 1.91066 1.18583 1.55265 1.75398 1.23468 0.93823 0.92467 0.91262 0.91586 0.75188 0.89920 0.91419 0.88763 0.88884 0.88764 0.88494 0.88741 0.88833 0.87565 0.87660 0.91078 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.23 11.09 55.43 0.61 -21.61 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.54 -13.25 8.62 -34.44 -0.30 -13.55 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.59 1.44 -90.84 -0.13 5.46 16 10 O -0.57 -14.30 13.48 -35.23 -0.48 -14.77 16 11 C 0.08 1.59 8.01 -2.97 -0.02 1.57 16 12 N -0.63 -12.98 3.61 -178.30 -0.64 -13.62 16 13 C 0.53 10.32 8.06 -10.99 -0.09 10.23 16 14 O -0.57 -12.34 16.71 5.55 0.09 -12.24 16 15 C -0.15 -2.28 5.77 -27.88 -0.16 -2.44 16 16 C 0.16 2.17 5.30 -4.04 -0.02 2.15 16 17 N -0.63 -7.28 2.96 -178.84 -0.53 -7.81 16 18 C 0.06 0.41 7.70 -3.15 -0.02 0.39 16 19 C 0.04 0.24 8.23 37.73 0.31 0.55 16 20 O -0.33 -3.92 11.09 -37.83 -0.42 -4.33 16 21 C 0.64 9.23 8.85 53.71 0.48 9.70 16 22 O -0.52 -9.73 17.54 -19.12 -0.34 -10.07 16 23 C 0.11 2.40 8.22 -2.97 -0.02 2.37 16 24 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 25 H 0.39 9.86 6.46 45.56 0.29 10.16 16 26 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.12 8.10 -51.92 -0.42 0.70 16 31 H 0.10 1.46 7.88 -51.93 -0.41 1.05 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -31.59 322.81 -6.24 -37.83 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.30 Total: 9.51 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -0.08 Total: 18.11 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.56 Total: -43.05 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.14 Total: -41.41 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.59 -6.24 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492292631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.799 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds