Wall clock time and date at job start Tue Mar 31 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99728 * 2 1 4 4 C 1.50698 * 109.46687 * 269.99391 * 3 2 1 5 5 H 1.08002 * 120.00282 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00129 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99693 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00305 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46930 * 60.00406 * 8 6 4 10 10 H 1.48499 * 109.47236 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47400 * 300.00445 * 8 6 4 12 12 C 1.34771 * 119.99804 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99776 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00476 * 0.02562 * 12 2 1 15 15 C 1.53661 * 112.53973 * 300.40442 * 14 12 2 16 16 C 1.54901 * 100.63529 * 268.78721 * 15 14 12 17 17 C 1.51128 * 104.27136 * 333.58439 * 16 15 14 18 18 O 1.21281 * 124.72527 * 191.29927 * 17 16 15 19 19 N 1.35823 * 110.54239 * 11.27615 * 17 16 15 20 20 C 1.46838 * 138.49258 * 194.78679 * 19 17 16 21 21 C 1.54426 * 113.56163 * 164.34616 * 20 19 17 22 22 S 1.83546 * 112.61770 * 66.01107 * 14 12 2 23 23 H 1.08996 * 109.47812 * 270.00516 * 1 2 3 24 24 H 1.09004 * 109.47214 * 30.00766 * 1 2 3 25 25 H 1.09006 * 109.47274 * 150.00512 * 1 2 3 26 26 H 1.08998 * 109.47481 * 29.99162 * 3 2 1 27 27 H 1.09002 * 109.46995 * 149.99808 * 3 2 1 28 28 H 0.97002 * 119.99562 * 179.97438 * 7 6 4 29 29 H 1.09003 * 111.17944 * 26.62967 * 15 14 12 30 30 H 1.08997 * 111.18550 * 150.89703 * 15 14 12 31 31 H 1.08993 * 110.47457 * 92.28650 * 16 15 14 32 32 H 1.09005 * 110.46666 * 214.88942 * 16 15 14 33 33 H 1.08999 * 108.67817 * 43.26735 * 20 19 17 34 34 H 1.09010 * 108.67781 * 285.41051 * 20 19 17 35 35 H 1.09005 * 110.98587 * 224.42363 * 21 20 19 36 36 H 1.09003 * 110.99422 * 100.61016 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7036 -1.4208 5 1 2.0974 1.0960 -2.2417 6 6 3.1268 2.8773 -1.6729 7 7 3.5549 3.6170 -0.6733 8 14 3.4389 3.4160 -3.4341 9 1 2.1416 3.5939 -4.1345 10 1 4.1812 4.7022 -3.4342 11 1 4.2412 2.3807 -4.1337 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 0.4683 -2.6230 1.2243 16 6 1.4249 -3.3361 2.2122 17 6 2.4019 -4.0685 1.3217 18 8 3.1937 -4.9035 1.7047 19 7 2.2693 -3.6615 0.0327 20 6 2.6772 -4.1026 -1.3072 21 6 1.8982 -3.4124 -2.4480 22 16 0.4365 -2.7396 -1.5477 23 1 -0.3634 0.0001 1.0276 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3634 -0.8901 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1498 1.1385 0.5139 28 1 4.0324 4.4426 -0.8507 29 1 0.1599 -1.6503 1.6074 30 1 -0.3966 -3.2451 0.9941 31 1 1.9465 -2.6066 2.8315 32 1 0.8737 -4.0413 2.8344 33 1 2.5246 -5.1792 -1.3818 34 1 3.7397 -3.8948 -1.4347 35 1 1.5921 -4.1349 -3.2046 36 1 2.4864 -2.6095 -2.8926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522781967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:59 Heat of formation + Delta-G solvation = -36.765233 kcal Electronic energy + Delta-G solvation = -21356.315928 eV Core-core repulsion = 18160.829662 eV Total energy + Delta-G solvation = -3195.486266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86138 -38.64885 -36.52136 -35.14959 -33.99792 -32.63342 -29.73784 -28.90619 -27.20986 -25.99759 -24.19826 -23.23235 -21.97509 -20.06302 -18.86104 -17.73755 -16.79158 -16.58931 -15.98833 -15.65703 -15.35995 -15.22657 -14.55171 -14.28368 -13.99911 -13.72398 -13.58728 -13.24910 -13.01059 -12.64732 -12.44866 -12.24197 -11.93685 -11.82691 -11.48054 -11.32819 -11.16193 -10.95157 -10.66618 -10.53403 -10.21075 -9.91797 -9.77953 -9.61934 -8.61730 -8.48779 -7.84687 -7.79983 -6.10112 -4.15082 1.31630 1.79429 2.43142 2.61617 3.25918 3.28617 3.33160 3.36559 3.65286 3.95462 4.17977 4.38955 4.47064 4.68582 4.72302 4.77500 5.08107 5.24688 5.29557 5.37795 5.45020 5.53193 5.62858 5.64827 5.68423 5.82546 6.01999 6.19731 6.88957 7.00124 7.30621 7.39464 7.85418 8.00516 8.14836 8.19460 8.72589 8.91482 9.49968 10.98104 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.005863 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.400479 B = 4774.323099 C = 5002.015675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.583 5.583 3 C 0.247 3.753 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.515 3.485 13 O -0.518 6.518 14 C 0.149 3.851 15 C -0.115 4.115 16 C -0.143 4.143 17 C 0.550 3.450 18 O -0.521 6.521 19 N -0.601 5.601 20 C 0.127 3.873 21 C -0.083 4.083 22 S -0.230 6.230 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 -12.805 1.155 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.314 5.314 3 C 0.128 3.872 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.295 3.705 13 O -0.395 6.395 14 C -0.052 4.052 15 C -0.154 4.154 16 C -0.184 4.184 17 C 0.338 3.662 18 O -0.396 6.396 19 N -0.339 5.339 20 C 0.005 3.995 21 C -0.231 4.231 22 S -0.001 6.001 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.936 -13.012 1.014 16.403 hybrid contribution 1.304 0.364 -0.958 1.659 sum -8.632 -12.648 0.056 15.313 Atomic orbital electron populations 1.22012 0.81182 1.03664 1.00349 1.47987 1.06375 1.06989 1.70091 1.19379 0.92520 0.77455 0.97835 1.21366 1.36769 1.06423 0.92134 0.92302 1.24926 0.95273 0.96334 0.97466 1.69917 1.38149 1.14407 1.30829 0.86555 0.78415 0.77850 0.84598 1.20135 1.21137 1.20231 1.19650 0.87781 0.83991 0.79043 1.90729 1.12943 1.86235 1.49567 1.24378 0.92270 0.90761 0.97794 1.22805 0.97058 1.03948 0.91557 1.22422 0.96673 1.01231 0.98071 1.20981 0.83197 0.81364 0.80615 1.90708 1.37872 1.34322 1.76687 1.49450 1.51868 1.26400 1.06170 1.21477 0.99750 0.99066 0.79216 1.24715 0.95700 1.03465 0.99237 1.88073 1.16683 1.83400 1.11985 0.93340 0.90101 0.91458 0.94509 0.93763 0.92578 0.87380 0.87780 0.86924 0.86688 0.89874 0.89924 0.85940 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.93 59.85 0.53 1.62 16 2 N -0.58 -11.72 2.85 -182.96 -0.52 -12.25 16 3 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 4 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 10.36 6.77 -10.99 -0.07 10.28 16 13 O -0.52 -12.84 16.24 5.55 0.09 -12.75 16 14 C 0.15 2.26 0.31 -67.80 -0.02 2.24 16 15 C -0.11 -1.29 5.52 -25.38 -0.14 -1.43 16 16 C -0.14 -1.65 6.81 -26.67 -0.18 -1.83 16 17 C 0.55 8.80 8.38 -10.30 -0.09 8.71 16 18 O -0.52 -9.96 18.03 5.56 0.10 -9.86 16 19 N -0.60 -9.41 2.95 -159.75 -0.47 -9.88 16 20 C 0.13 1.71 7.25 -3.11 -0.02 1.69 16 21 C -0.08 -1.00 7.56 37.91 0.29 -0.71 16 22 S -0.23 -3.11 19.80 -107.50 -2.13 -5.24 16 23 H 0.05 0.58 6.88 -51.93 -0.36 0.23 16 24 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 25 H 0.07 0.91 4.30 -42.18 -0.18 0.73 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 27 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.11 1.12 5.40 -51.93 -0.28 0.84 16 30 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16 31 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -34.86 308.51 -7.25 -42.12 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.53 Total: -1.46 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -0.15 Total: 13.53 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.26 Total: -47.42 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.19 Total: -22.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.13 Total: -5.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.86 -7.25 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522781967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.351 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds