Wall clock time and date at job start Tue Mar 31 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65600 * 120.00245 * 2 1 4 4 O 1.42098 * 106.39962 * 311.46194 * 3 2 1 5 5 O 1.42100 * 106.40111 * 178.54466 * 3 2 1 6 6 C 1.76199 * 107.21677 * 65.00229 * 3 2 1 7 7 C 1.38254 * 120.00075 * 269.90828 * 6 3 2 8 8 C 1.38204 * 119.99816 * 179.97438 * 7 6 3 9 9 C 1.38262 * 120.00535 * 0.13864 * 8 7 6 10 10 C 1.38207 * 119.99549 * 359.95204 * 9 8 7 11 11 C 1.50701 * 119.99822 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.46874 * 269.97599 * 11 10 9 13 13 C 1.46902 * 110.99695 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46883 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00000 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00134 * 180.02562 * 14 13 12 17 17 N 1.31525 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46929 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47055 * 119.99631 * 18 16 14 21 21 H 1.48497 * 109.46969 * 239.99642 * 18 16 14 22 22 C 1.38220 * 119.99875 * 90.00339 * 6 3 2 23 23 H 1.08994 * 109.47148 * 59.99555 * 1 2 3 24 24 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46431 * 299.99770 * 1 2 3 26 26 H 0.97009 * 119.99640 * 180.02562 * 2 1 3 27 27 H 1.07997 * 119.99692 * 0.06811 * 7 6 3 28 28 H 1.08013 * 119.99933 * 180.11390 * 8 7 6 29 29 H 1.07991 * 120.00050 * 179.97438 * 9 8 7 30 30 H 1.08993 * 109.47341 * 29.98219 * 11 10 9 31 31 H 1.09001 * 109.46864 * 149.98303 * 11 10 9 32 32 H 1.00896 * 110.99986 * 56.05181 * 12 11 10 33 33 H 1.09002 * 109.47232 * 300.00292 * 13 12 11 34 34 H 1.09008 * 109.46883 * 60.00344 * 13 12 11 35 35 H 0.96991 * 119.99843 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.99660 * 0.26988 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1002 0.0346 6 6 1.9379 2.2414 1.5254 7 6 0.8599 3.1022 1.6174 8 6 0.5811 3.7350 2.8140 9 6 1.3818 3.5094 3.9184 10 6 2.4605 2.6504 3.8259 11 6 3.3329 2.4040 5.0297 12 7 4.4283 3.3827 5.0491 13 6 5.3011 3.1730 6.2120 14 6 6.4099 4.1935 6.1983 15 1 6.4614 4.9243 5.4049 16 6 7.3593 4.1934 7.1982 17 7 7.2969 3.3030 8.1642 18 14 8.7334 5.4587 7.1816 19 1 8.5792 6.3413 5.9974 20 1 8.6690 6.2756 8.4200 21 1 10.0445 4.7647 7.1140 22 6 2.7382 2.0156 2.6295 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.9500 -0.8402 -0.0004 27 1 0.2350 3.2789 0.7545 28 1 -0.2621 4.4060 2.8864 29 1 1.1641 4.0042 4.8532 30 1 2.7377 2.5068 5.9370 31 1 3.7465 1.3968 4.9787 32 1 4.0707 4.3260 5.0313 33 1 4.7191 3.2815 7.1273 34 1 5.7283 2.1711 6.1697 35 1 7.9645 3.3031 8.8677 36 1 3.5837 1.3477 2.5560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564843538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:54 Heat of formation + Delta-G solvation = -78.831733 kcal Electronic energy + Delta-G solvation = -19651.626334 eV Core-core repulsion = 16454.315928 eV Total energy + Delta-G solvation = -3197.310407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43414 -38.37400 -37.13955 -36.98030 -35.87109 -34.75095 -32.50964 -32.21954 -28.94277 -26.81522 -26.06174 -24.30698 -23.54613 -22.57872 -20.46750 -18.99340 -18.63745 -18.27842 -17.42247 -17.03732 -16.84226 -16.57818 -16.03540 -15.51611 -15.40052 -15.05483 -14.72260 -14.61013 -14.08345 -13.85403 -13.75082 -13.35618 -13.32712 -13.23987 -13.21682 -13.10415 -12.71776 -12.67356 -12.51320 -12.22826 -11.92100 -11.78490 -11.32587 -10.69520 -10.53569 -10.36609 -9.91748 -9.17730 -8.25381 -6.36429 -0.64430 -0.18824 0.27311 1.39544 1.41020 1.54699 2.02934 2.37764 2.46776 2.76707 3.08090 3.27693 3.62591 3.78975 3.91062 4.05172 4.21177 4.25537 4.27965 4.46678 4.62849 4.70053 4.81306 4.90608 4.94816 5.01894 5.02987 5.06570 5.21296 5.27486 5.46978 5.58035 5.84466 5.98032 6.09611 6.37745 6.65228 6.84195 7.34485 8.86282 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.003420 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.294562 B = 8184.311059 C = 8549.930803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.111 6.111 3 S 2.718 3.282 4 O -0.980 6.980 5 O -0.995 6.995 6 C -0.680 4.680 7 C -0.030 4.030 8 C -0.132 4.132 9 C -0.061 4.061 10 C -0.105 4.105 11 C 0.095 3.905 12 N -0.688 5.688 13 C 0.207 3.793 14 C -0.537 4.537 15 H 0.062 0.938 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.017 4.017 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.428 0.572 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.143 0.857 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.336 0.664 33 H -0.032 1.032 34 H 0.002 0.998 35 H 0.266 0.734 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.105 -5.457 -14.501 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.874 5.874 3 S 2.807 3.193 4 O -0.970 6.970 5 O -0.986 6.986 6 C -0.768 4.768 7 C -0.049 4.049 8 C -0.151 4.151 9 C -0.080 4.080 10 C -0.107 4.107 11 C -0.034 4.034 12 N -0.318 5.318 13 C 0.080 3.920 14 C -0.575 4.575 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.204 1.204 22 C -0.037 4.037 23 H 0.089 0.911 24 H 0.127 0.873 25 H 0.087 0.913 26 H 0.265 0.735 27 H 0.180 0.820 28 H 0.185 0.815 29 H 0.161 0.839 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.153 0.847 33 H -0.014 1.014 34 H 0.020 0.980 35 H 0.075 0.925 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.209 -5.428 -15.433 25.232 hybrid contribution 0.458 0.362 1.924 2.011 sum -18.751 -5.067 -13.509 23.659 Atomic orbital electron populations 1.21802 0.76809 1.06210 1.02609 1.55037 1.17181 1.23456 1.91711 1.00996 0.71942 0.72994 0.73379 1.93539 1.79004 1.69605 1.54838 1.93569 1.33465 1.83955 1.87567 1.30804 1.08061 1.17241 1.20685 1.21261 0.93219 0.91242 0.99160 1.21621 1.00945 1.00595 0.91911 1.21677 0.92397 0.93674 1.00203 1.19985 0.96665 0.98871 0.95133 1.20895 0.91124 0.97300 0.94101 1.60600 1.19489 1.06740 1.45011 1.19246 0.91066 0.95980 0.85716 1.21555 1.11030 1.15693 1.09269 0.91995 1.25937 1.00689 0.98203 0.94765 1.70085 1.36829 1.36819 1.13509 0.85278 0.78178 0.78502 0.78300 1.18904 1.20004 1.20385 1.20801 0.95628 0.96176 0.91142 0.91089 0.87303 0.91286 0.73531 0.82009 0.81542 0.83886 0.94164 0.91272 0.84675 1.01419 0.97988 0.92520 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.14 127.77 1.42 2.03 16 2 N -1.11 -15.35 6.19 -206.54 -1.28 -16.63 16 3 S 2.72 61.67 5.74 -56.49 -0.32 61.35 16 4 O -0.98 -25.67 17.01 -128.00 -2.18 -27.85 16 5 O -1.00 -30.83 17.28 -128.00 -2.21 -33.04 16 6 C -0.68 -16.15 5.95 22.27 0.13 -16.02 16 7 C -0.03 -0.57 9.52 22.27 0.21 -0.36 16 8 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 9 C -0.06 -1.39 9.70 22.27 0.22 -1.18 16 10 C -0.11 -3.07 5.39 -19.87 -0.11 -3.18 16 11 C 0.09 3.34 5.81 85.56 0.50 3.83 16 12 N -0.69 -30.22 6.48 -521.96 -3.38 -33.60 16 13 C 0.21 11.22 5.44 85.56 0.47 11.69 16 14 C -0.54 -31.17 9.32 25.60 0.24 -30.94 16 15 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 18 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 C -0.02 -0.50 9.18 22.27 0.20 -0.30 16 23 H 0.07 0.59 8.10 -2.39 -0.02 0.58 16 24 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 25 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.43 4.47 8.96 -96.73 -0.87 3.60 16 27 H 0.16 2.26 7.62 -2.91 -0.02 2.24 16 28 H 0.17 1.79 8.06 -2.90 -0.02 1.77 16 29 H 0.14 2.79 8.06 -2.92 -0.02 2.77 16 30 H 0.04 1.34 8.08 -2.39 -0.02 1.32 16 31 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 32 H 0.34 13.94 8.71 -89.70 -0.78 13.16 16 33 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 34 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.27 15.03 8.31 -92.72 -0.77 14.26 16 36 H 0.13 3.91 7.61 -2.91 -0.02 3.88 16 Total: -1.00 -77.14 325.77 -3.64 -80.78 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -0.55 Total: 14.27 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.97 Total: -35.97 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.38 Total: -106.43 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -4.39 Total: -60.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 61.67 SS G_CDS: -0.32 Total: 61.35 kcal Total: -77.14 -3.64 -80.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564843538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.950 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds