Wall clock time and date at job start Tue Mar 31 2020 02:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48502 * 109.47437 * 270.00315 * 3 2 1 5 5 H 1.48508 * 109.47078 * 30.00249 * 3 2 1 6 6 H 1.48499 * 109.47356 * 149.99749 * 3 2 1 7 7 C 1.37877 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99718 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47113 * 300.00505 * 9 7 2 11 11 C 1.52998 * 109.47081 * 179.97438 * 9 7 2 12 12 C 1.50695 * 109.47310 * 175.00198 * 11 9 7 13 13 N 1.30119 * 124.94840 * 305.19474 * 12 11 9 14 14 C 1.35786 * 109.63919 * 180.28876 * 13 12 11 15 15 C 1.39742 * 133.59941 * 179.71917 * 14 13 12 16 16 C 1.36608 * 119.88271 * 180.02562 * 15 14 13 17 17 C 1.38770 * 120.67167 * 0.02562 * 16 15 14 18 18 C 1.37847 * 120.45359 * 359.97211 * 17 16 15 19 19 C 1.38836 * 119.68949 * 0.02562 * 18 17 16 20 20 N 1.36036 * 124.95128 * 124.99846 * 12 11 9 21 21 H 0.97001 * 126.35075 * 359.97438 * 20 12 11 22 22 C 1.53003 * 109.47006 * 60.00405 * 9 7 2 23 23 F 1.39897 * 109.47248 * 179.97438 * 22 9 7 24 24 F 1.39905 * 109.47179 * 299.99818 * 22 9 7 25 25 F 1.39900 * 109.47234 * 59.99487 * 22 9 7 26 26 H 0.97006 * 119.99594 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46681 * 55.00641 * 11 9 7 28 28 H 1.08999 * 109.47515 * 295.00368 * 11 9 7 29 29 H 1.08000 * 120.05952 * 359.97438 * 15 14 13 30 30 H 1.08004 * 119.66088 * 180.02562 * 16 15 14 31 31 H 1.08004 * 119.77595 * 179.97438 * 17 16 15 32 32 H 1.08003 * 120.15899 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8896 11 6 2.2451 -3.6621 -0.0018 12 6 1.4959 -4.9637 0.1220 13 7 0.6519 -5.2507 1.0698 14 6 0.1647 -6.5043 0.8829 15 6 -0.7448 -7.2994 1.5854 16 6 -1.0402 -8.5550 1.1357 17 6 -0.4453 -9.0530 -0.0149 18 6 0.4547 -8.2866 -0.7240 19 6 0.7672 -7.0080 -0.2822 20 7 1.6004 -6.0084 -0.7431 21 1 2.1602 -6.0459 -1.5343 22 6 0.3709 -2.5799 -1.2495 23 9 -0.3282 -3.7917 -1.2499 24 9 -0.5382 -1.5165 -1.2490 25 9 1.1748 -2.5055 -2.3921 26 1 -0.4850 0.8401 0.0004 27 1 2.9298 -3.5556 0.8396 28 1 2.8107 -3.6556 -0.9336 29 1 -1.2126 -6.9222 2.4827 30 1 -1.7439 -9.1663 1.6812 31 1 -0.6891 -10.0480 -0.3572 32 1 0.9145 -8.6788 -1.6191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575423471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:07 Heat of formation + Delta-G solvation = -74.334700 kcal Electronic energy + Delta-G solvation = -22806.522989 eV Core-core repulsion = 18932.106896 eV Total energy + Delta-G solvation = -3874.416092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.43242 -46.08346 -45.60741 -41.74667 -37.20469 -34.50869 -32.79670 -31.88541 -29.74533 -28.84183 -26.00753 -24.41070 -22.25891 -21.88721 -21.19515 -19.87256 -17.67573 -17.25919 -16.88256 -16.70073 -16.57017 -15.20930 -15.04564 -14.95759 -14.58865 -14.06280 -13.73498 -13.26366 -12.97907 -12.76094 -12.58405 -12.46873 -12.27661 -11.94816 -11.89293 -11.82754 -11.51056 -11.31280 -11.21909 -10.94675 -10.75635 -10.40428 -10.09659 -9.91259 -9.50502 -9.36628 -8.58103 -8.10806 -7.77961 -6.13373 -4.35098 1.21478 1.75656 3.13238 3.23114 3.24952 3.30059 3.32428 4.14545 4.25847 4.46260 4.57129 4.87165 5.00589 5.14609 5.28459 5.43809 5.61138 5.67867 5.72257 5.79634 5.89169 5.92747 6.07667 6.25051 6.31110 6.59965 6.66592 6.70026 6.80623 7.11976 7.30478 7.64792 7.68219 7.86409 8.33751 8.63339 9.30948 10.78847 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.005037 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.562753 B = 5557.086775 C = 5599.710301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.062 3.938 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.026 3.974 10 H 0.081 0.919 11 C -0.041 4.041 12 C 0.311 3.689 13 N -0.487 5.487 14 C 0.057 3.943 15 C -0.067 4.067 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.111 4.111 19 C 0.041 3.959 20 N -0.599 5.599 21 H 0.419 0.581 22 C 0.426 3.574 23 F -0.224 7.224 24 F -0.137 7.137 25 F -0.212 7.212 26 H 0.265 0.735 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -12.837 -1.258 13.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.091 0.909 9 C 0.005 3.995 10 H 0.099 0.901 11 C -0.080 4.080 12 C 0.045 3.955 13 N -0.207 5.207 14 C -0.062 4.062 15 C -0.087 4.087 16 C -0.155 4.155 17 C -0.135 4.135 18 C -0.132 4.132 19 C -0.069 4.069 20 N -0.210 5.210 21 H 0.257 0.743 22 C 0.371 3.629 23 F -0.206 7.206 24 F -0.118 7.118 25 F -0.194 7.194 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.344 -12.178 -0.555 12.264 hybrid contribution 0.638 0.312 -1.512 1.671 sum 1.982 -11.866 -2.067 12.206 Atomic orbital electron populations 1.70401 1.05864 1.26902 1.44493 1.25130 0.95072 1.00060 0.94288 0.86342 0.79715 0.82240 0.78302 1.20425 1.20939 1.19481 1.20768 0.93477 0.88321 1.54961 0.90878 1.19882 0.93426 0.94059 0.92135 0.90125 1.20469 0.97663 0.85831 1.04053 1.24055 0.94901 0.90781 0.85812 1.70477 1.12381 1.12670 1.25195 1.19186 0.99887 0.92159 0.94976 1.20015 0.96236 0.92977 0.99457 1.20542 1.01650 0.95726 0.97610 1.20744 0.97501 0.99405 0.95878 1.19889 1.01047 0.91276 1.00983 1.18884 0.97640 0.92139 0.98276 1.43151 1.38762 1.13403 1.25663 0.74311 1.22878 0.80759 0.72436 0.86832 1.93041 1.81749 1.48868 1.96974 1.93411 1.68525 1.53674 1.96231 1.92975 1.74488 1.96213 1.55747 0.92474 0.87572 0.90027 0.85599 0.85854 0.85846 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.40 9.50 55.43 0.53 -22.88 16 2 C 0.06 1.63 5.20 -17.82 -0.09 1.53 16 3 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -13.67 8.30 -34.44 -0.29 -13.95 16 8 H 0.07 1.76 7.74 -52.49 -0.41 1.35 16 9 C 0.03 0.61 2.00 -91.77 -0.18 0.43 16 10 H 0.08 2.14 8.03 -51.93 -0.42 1.72 16 11 C -0.04 -0.78 5.19 -27.89 -0.14 -0.93 16 12 C 0.31 5.92 5.11 -154.82 -0.79 5.13 16 13 N -0.49 -10.16 11.08 -8.23 -0.09 -10.25 16 14 C 0.06 1.06 7.23 -84.70 -0.61 0.45 16 15 C -0.07 -1.05 10.05 -39.61 -0.40 -1.45 16 16 C -0.13 -1.70 9.96 -39.97 -0.40 -2.10 16 17 C -0.12 -1.38 10.03 -39.53 -0.40 -1.78 16 18 C -0.11 -1.48 10.07 -39.50 -0.40 -1.88 16 19 C 0.04 0.68 7.31 -83.98 -0.61 0.06 16 20 N -0.60 -9.66 6.23 -8.00 -0.05 -9.71 16 21 H 0.42 5.32 8.96 -40.82 -0.37 4.95 16 22 C 0.43 10.57 2.66 37.16 0.10 10.67 16 23 F -0.22 -5.41 15.00 2.25 0.03 -5.37 16 24 F -0.14 -3.81 12.91 2.25 0.03 -3.78 16 25 F -0.21 -5.07 16.42 2.25 0.04 -5.03 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 28 H 0.08 1.40 7.66 -51.93 -0.40 1.01 16 29 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -30.46 286.19 -7.27 -37.73 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.84 Total: 3.53 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -4.21 Total: -3.82 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.39 Total: -42.84 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 0.10 Total: -14.19 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.46 -7.27 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575423471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.601 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds