Wall clock time and date at job start Tue Mar 31 2020 02:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48502 * 109.47437 * 270.00315 * 3 2 1 5 5 H 1.48508 * 109.47078 * 30.00249 * 3 2 1 6 6 H 1.48499 * 109.47356 * 149.99749 * 3 2 1 7 7 C 1.37877 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99718 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47113 * 300.00505 * 9 7 2 11 11 C 1.52998 * 109.47081 * 179.97438 * 9 7 2 12 12 C 1.50695 * 109.47310 * 175.00198 * 11 9 7 13 13 N 1.30119 * 124.94840 * 305.19474 * 12 11 9 14 14 C 1.35786 * 109.63919 * 180.28876 * 13 12 11 15 15 C 1.39742 * 133.59941 * 179.71917 * 14 13 12 16 16 C 1.36608 * 119.88271 * 180.02562 * 15 14 13 17 17 C 1.38770 * 120.67167 * 0.02562 * 16 15 14 18 18 C 1.37847 * 120.45359 * 359.97211 * 17 16 15 19 19 C 1.38836 * 119.68949 * 0.02562 * 18 17 16 20 20 N 1.36036 * 124.95128 * 124.99846 * 12 11 9 21 21 H 0.97001 * 126.35075 * 359.97438 * 20 12 11 22 22 C 1.53003 * 109.47006 * 60.00405 * 9 7 2 23 23 F 1.39897 * 109.47248 * 179.97438 * 22 9 7 24 24 F 1.39905 * 109.47179 * 299.99818 * 22 9 7 25 25 F 1.39900 * 109.47234 * 59.99487 * 22 9 7 26 26 H 0.97006 * 119.99594 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46681 * 55.00641 * 11 9 7 28 28 H 1.08999 * 109.47515 * 295.00368 * 11 9 7 29 29 H 1.08000 * 120.05952 * 359.97438 * 15 14 13 30 30 H 1.08004 * 119.66088 * 180.02562 * 16 15 14 31 31 H 1.08004 * 119.77595 * 179.97438 * 17 16 15 32 32 H 1.08003 * 120.15899 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8896 11 6 2.2451 -3.6621 -0.0018 12 6 1.4959 -4.9637 0.1220 13 7 0.6519 -5.2507 1.0698 14 6 0.1647 -6.5043 0.8829 15 6 -0.7448 -7.2994 1.5854 16 6 -1.0402 -8.5550 1.1357 17 6 -0.4453 -9.0530 -0.0149 18 6 0.4547 -8.2866 -0.7240 19 6 0.7672 -7.0080 -0.2822 20 7 1.6004 -6.0084 -0.7431 21 1 2.1602 -6.0459 -1.5343 22 6 0.3709 -2.5799 -1.2495 23 9 -0.3282 -3.7917 -1.2499 24 9 -0.5382 -1.5165 -1.2490 25 9 1.1748 -2.5055 -2.3921 26 1 -0.4850 0.8401 0.0004 27 1 2.9298 -3.5556 0.8396 28 1 2.8107 -3.6556 -0.9336 29 1 -1.2126 -6.9222 2.4827 30 1 -1.7439 -9.1663 1.6812 31 1 -0.6891 -10.0480 -0.3572 32 1 0.9145 -8.6788 -1.6191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575423471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:07 Heat of formation + Delta-G solvation = -92.397226 kcal Electronic energy + Delta-G solvation = -22807.306239 eV Core-core repulsion = 18932.106896 eV Total energy + Delta-G solvation = -3875.199342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.42885 -48.04817 -47.68245 -42.99954 -38.34533 -36.28603 -34.08262 -33.67936 -30.87723 -30.23318 -27.58452 -26.38315 -23.56141 -23.13579 -22.70368 -21.39788 -19.33417 -18.76969 -18.74157 -18.44681 -18.10459 -17.08300 -16.63512 -16.24833 -16.10290 -15.20711 -15.03693 -14.90684 -14.79886 -14.49295 -14.47123 -14.29982 -14.06977 -13.90753 -13.77008 -13.15229 -12.83913 -12.77640 -12.66971 -12.43430 -12.38417 -11.98034 -11.78647 -11.53303 -11.28848 -10.83531 -10.57699 -9.24820 -9.00576 -8.12296 -6.39654 0.06647 0.64845 1.47204 1.47461 1.58692 1.85477 2.02356 2.40257 2.52477 2.99085 3.01621 3.25198 3.69985 3.78250 3.88646 3.96957 4.19454 4.25180 4.35371 4.50222 4.54485 4.58035 4.64346 4.94313 4.98595 5.20216 5.34292 5.52668 5.62934 5.66862 5.68850 5.91008 6.06011 6.48758 6.66101 7.02872 7.30085 8.80470 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.005037 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.562753 B = 5557.086775 C = 5599.710301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.548 4.548 8 H 0.087 0.913 9 C 0.028 3.972 10 H 0.044 0.956 11 C -0.031 4.031 12 C 0.293 3.707 13 N -0.529 5.529 14 C 0.011 3.989 15 C -0.093 4.093 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.115 4.115 19 C 0.029 3.971 20 N -0.588 5.588 21 H 0.433 0.567 22 C 0.425 3.575 23 F -0.221 7.221 24 F -0.157 7.157 25 F -0.206 7.206 26 H 0.262 0.738 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -14.888 -2.121 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.584 4.584 8 H 0.105 0.895 9 C 0.007 3.993 10 H 0.062 0.938 11 C -0.070 4.070 12 C 0.025 3.975 13 N -0.250 5.250 14 C -0.107 4.107 15 C -0.113 4.113 16 C -0.143 4.143 17 C -0.122 4.122 18 C -0.136 4.136 19 C -0.081 4.081 20 N -0.200 5.200 21 H 0.274 0.726 22 C 0.371 3.629 23 F -0.203 7.203 24 F -0.139 7.139 25 F -0.188 7.188 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.216 -14.255 -1.432 14.497 hybrid contribution 0.279 0.765 -1.231 1.476 sum 2.495 -13.490 -2.663 13.975 Atomic orbital electron populations 1.70554 1.07460 1.27425 1.45992 1.26002 0.95776 1.03610 0.93984 0.85343 0.78877 0.77986 0.78249 1.20262 1.21147 1.17944 1.21185 0.94258 0.88927 1.54055 0.89528 1.19720 0.93609 0.95826 0.90101 0.93771 1.20312 0.96629 0.84458 1.05593 1.23778 0.95567 0.91395 0.86721 1.70351 1.13474 1.14511 1.26646 1.19664 1.01903 0.92110 0.97066 1.20299 0.96682 0.94329 0.99988 1.21008 1.01117 0.94507 0.97667 1.21325 0.95501 1.00741 0.94616 1.20372 1.01185 0.89918 1.02118 1.19272 0.97606 0.93272 0.97937 1.42995 1.38733 1.12670 1.25615 0.72633 1.22926 0.80608 0.71993 0.87396 1.93042 1.81760 1.48484 1.97002 1.93370 1.69311 1.54811 1.96373 1.92972 1.74183 1.96185 1.55415 0.92790 0.86511 0.87998 0.85733 0.82346 0.81541 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.13 9.50 21.45 0.20 -49.93 16 2 C 0.01 0.52 5.20 84.66 0.44 0.96 16 3 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.55 -27.88 8.30 25.60 0.21 -27.67 16 8 H 0.09 4.08 7.74 -2.91 -0.02 4.05 16 9 C 0.03 1.38 2.00 -11.54 -0.02 1.35 16 10 H 0.04 2.47 8.03 -2.39 -0.02 2.45 16 11 C -0.03 -1.19 5.19 29.85 0.16 -1.03 16 12 C 0.29 11.27 5.11 137.92 0.70 11.97 16 13 N -0.53 -22.82 11.08 -179.96 -1.99 -24.81 16 14 C 0.01 0.40 7.23 39.45 0.29 0.69 16 15 C -0.09 -2.88 10.05 22.25 0.22 -2.65 16 16 C -0.12 -2.73 9.96 22.02 0.22 -2.51 16 17 C -0.10 -2.01 10.03 22.30 0.22 -1.79 16 18 C -0.12 -2.70 10.07 22.32 0.22 -2.48 16 19 C 0.03 0.93 7.31 38.86 0.28 1.22 16 20 N -0.59 -18.54 6.23 -179.22 -1.12 -19.66 16 21 H 0.43 10.40 8.96 -92.71 -0.83 9.57 16 22 C 0.43 21.50 2.66 71.98 0.19 21.70 16 23 F -0.22 -10.86 15.00 44.97 0.67 -10.18 16 24 F -0.16 -9.00 12.91 44.97 0.58 -8.42 16 25 F -0.21 -9.77 16.42 44.97 0.74 -9.04 16 26 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 27 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 28 H 0.10 3.41 7.66 -2.39 -0.02 3.39 16 29 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -67.93 286.19 4.60 -63.33 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.35 Total: 15.35 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 3.14 Total: -0.24 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -2.91 Total: -94.40 kcal Atomic # 9 Polarization: -29.64 SS G_CDS: 1.99 Total: -27.64 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -67.93 4.60 -63.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575423471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.071 kcal (2) G-P(sol) polarization free energy of solvation -67.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds