Wall clock time and date at job start Tue Mar 31 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99596 * 2 1 4 4 H 1.48505 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46991 * 299.99925 * 3 2 1 6 6 H 1.48503 * 109.47073 * 59.99958 * 3 2 1 7 7 C 1.37875 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00160 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46940 * 60.00268 * 9 7 2 11 11 C 1.52994 * 109.47153 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.47558 * 295.32580 * 11 9 7 13 13 N 1.30110 * 124.94905 * 304.18611 * 12 11 9 14 14 C 1.35785 * 109.64291 * 179.97438 * 13 12 11 15 15 C 1.39744 * 133.59490 * 180.02562 * 14 13 12 16 16 C 1.36607 * 119.88121 * 179.97438 * 15 14 13 17 17 C 1.38781 * 120.66777 * 0.02562 * 16 15 14 18 18 C 1.37851 * 120.45338 * 359.97438 * 17 16 15 19 19 C 1.38835 * 119.69041 * 359.71717 * 18 17 16 20 20 N 1.36036 * 124.95209 * 124.16224 * 12 11 9 21 21 H 0.96995 * 126.34436 * 0.02562 * 20 12 11 22 22 C 1.52991 * 109.47432 * 300.00508 * 9 7 2 23 23 F 1.39907 * 109.46948 * 306.53759 * 22 9 7 24 24 F 1.39906 * 109.47500 * 66.53154 * 22 9 7 25 25 F 1.39903 * 109.47551 * 186.53475 * 22 9 7 26 26 H 0.96997 * 120.01058 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47082 * 175.32680 * 11 9 7 28 28 H 1.09005 * 109.47335 * 55.33021 * 11 9 7 29 29 H 1.07994 * 120.05970 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.66549 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.77272 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.15545 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 2.2454 -3.6619 -0.0018 12 6 3.0329 -3.6483 -1.2867 13 7 2.5137 -3.6746 -2.4794 14 6 3.5034 -3.6510 -3.4087 15 6 3.5136 -3.6618 -4.8061 16 6 4.7024 -3.6294 -5.4782 17 6 5.9053 -3.5863 -4.7874 18 6 5.9193 -3.5749 -3.4090 19 6 4.7207 -3.6008 -2.7088 20 7 4.3901 -3.6062 -1.3685 21 1 5.0104 -3.5805 -0.6232 22 6 0.3719 -2.5806 1.2489 23 9 1.1559 -2.3577 2.3860 24 9 -0.6320 -1.6088 1.1769 25 9 -0.2121 -3.8495 1.3264 26 1 -0.4851 0.8399 0.0004 27 1 1.7031 -4.6038 0.0819 28 1 2.9265 -3.5586 0.8429 29 1 2.5834 -3.6957 -5.3536 30 1 4.7063 -3.6383 -6.5582 31 1 6.8367 -3.5606 -5.3334 32 1 6.8582 -3.5417 -2.8762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575423479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:09 Heat of formation + Delta-G solvation = -78.796474 kcal Electronic energy + Delta-G solvation = -22430.797219 eV Core-core repulsion = 18556.187650 eV Total energy + Delta-G solvation = -3874.609569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.46529 -46.11284 -45.64816 -41.72022 -37.18126 -34.51412 -32.75168 -31.83283 -29.70319 -28.81837 -25.99785 -24.53706 -22.19139 -21.81611 -21.11605 -19.87932 -17.58110 -17.38386 -16.88420 -16.69963 -16.57442 -15.29487 -14.99796 -14.79623 -14.55314 -14.02493 -13.71272 -13.40687 -12.97624 -12.71103 -12.67635 -12.51011 -12.26775 -11.99608 -11.91978 -11.84506 -11.46146 -11.28873 -11.13120 -10.98871 -10.69778 -10.39112 -10.20875 -9.87431 -9.49766 -9.33481 -8.60905 -8.06985 -7.74321 -6.14783 -4.33959 1.26109 1.79338 3.15679 3.21728 3.28807 3.31160 3.31504 4.18177 4.26130 4.43203 4.58768 4.89655 5.04020 5.18116 5.31486 5.46065 5.61525 5.69958 5.75838 5.81167 5.92214 5.97083 6.04225 6.16200 6.30833 6.52593 6.66683 6.72422 6.85000 7.15392 7.29412 7.66145 7.71589 7.87583 8.39538 8.62585 9.32094 10.79484 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.006133 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.686960 B = 4564.456484 C = 5375.645630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.022 3.978 10 H 0.082 0.918 11 C -0.041 4.041 12 C 0.337 3.663 13 N -0.489 5.489 14 C 0.057 3.943 15 C -0.067 4.067 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.110 4.110 19 C 0.039 3.961 20 N -0.600 5.600 21 H 0.419 0.581 22 C 0.433 3.567 23 F -0.205 7.205 24 F -0.141 7.141 25 F -0.228 7.228 26 H 0.265 0.735 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -6.932 -3.972 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.565 4.565 8 H 0.083 0.917 9 C 0.001 3.999 10 H 0.099 0.901 11 C -0.081 4.081 12 C 0.071 3.929 13 N -0.209 5.209 14 C -0.062 4.062 15 C -0.087 4.087 16 C -0.155 4.155 17 C -0.136 4.136 18 C -0.131 4.131 19 C -0.071 4.071 20 N -0.211 5.211 21 H 0.258 0.742 22 C 0.379 3.621 23 F -0.187 7.187 24 F -0.122 7.122 25 F -0.210 7.210 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.633 -6.836 -4.198 11.073 hybrid contribution 1.462 1.114 0.874 2.036 sum 9.095 -5.722 -3.323 11.247 Atomic orbital electron populations 1.70327 1.05649 1.26878 1.45137 1.25083 0.95062 0.99840 0.94195 0.86384 0.79929 0.83071 0.77805 1.19765 1.20680 1.20644 1.20710 0.92968 0.88602 1.54224 0.91705 1.19874 0.93383 0.94556 0.92080 0.90064 1.20323 0.97515 1.00836 0.89391 1.23382 0.79544 0.94095 0.95922 1.70467 1.30141 1.22990 0.97288 1.19192 0.88518 1.04278 0.94226 1.20003 0.98563 0.99661 0.90463 1.20535 0.91919 1.03482 0.99592 1.20736 0.98015 1.01998 0.92865 1.19881 0.94379 1.04970 0.93905 1.18879 0.96949 1.07022 0.84268 1.43143 1.08379 1.63211 1.06326 0.74248 1.22477 0.80943 0.71820 0.86905 1.93001 1.75386 1.94644 1.55657 1.93362 1.62053 1.60802 1.96010 1.93014 1.86577 1.44374 1.97064 0.92463 0.89391 0.90001 0.85636 0.85906 0.85896 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.53 9.61 55.43 0.53 -23.00 16 2 C 0.07 1.75 5.27 -17.82 -0.09 1.65 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -13.60 7.63 -34.44 -0.26 -13.86 16 8 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 9 C 0.02 0.51 1.90 -91.78 -0.17 0.34 16 10 H 0.08 2.13 8.06 -51.93 -0.42 1.71 16 11 C -0.04 -0.79 5.06 -27.89 -0.14 -0.93 16 12 C 0.34 6.51 6.68 -154.82 -1.03 5.47 16 13 N -0.49 -10.35 11.15 -8.23 -0.09 -10.44 16 14 C 0.06 1.08 7.23 -84.70 -0.61 0.46 16 15 C -0.07 -1.07 10.05 -39.61 -0.40 -1.47 16 16 C -0.13 -1.73 9.96 -39.97 -0.40 -2.13 16 17 C -0.12 -1.42 10.03 -39.52 -0.40 -1.82 16 18 C -0.11 -1.50 10.07 -39.50 -0.40 -1.90 16 19 C 0.04 0.66 7.31 -83.99 -0.61 0.04 16 20 N -0.60 -9.79 6.23 -8.00 -0.05 -9.84 16 21 H 0.42 5.35 8.96 -40.82 -0.37 4.98 16 22 C 0.43 10.36 2.66 37.15 0.10 10.46 16 23 F -0.21 -4.82 16.68 2.25 0.04 -4.79 16 24 F -0.14 -3.77 13.27 2.25 0.03 -3.74 16 25 F -0.23 -4.99 16.46 2.25 0.04 -4.96 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 1.54 7.50 -51.93 -0.39 1.15 16 28 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 29 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -30.32 288.85 -7.42 -37.74 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.82 Total: 2.36 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.43 Total: -3.67 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.39 Total: -43.28 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 0.10 Total: -13.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.32 -7.42 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575423479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.060 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds