Wall clock time and date at job start Tue Mar 31 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99596 * 2 1 4 4 H 1.48505 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46991 * 299.99925 * 3 2 1 6 6 H 1.48503 * 109.47073 * 59.99958 * 3 2 1 7 7 C 1.37875 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00160 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46940 * 60.00268 * 9 7 2 11 11 C 1.52994 * 109.47153 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.47558 * 295.32580 * 11 9 7 13 13 N 1.30110 * 124.94905 * 304.18611 * 12 11 9 14 14 C 1.35785 * 109.64291 * 179.97438 * 13 12 11 15 15 C 1.39744 * 133.59490 * 180.02562 * 14 13 12 16 16 C 1.36607 * 119.88121 * 179.97438 * 15 14 13 17 17 C 1.38781 * 120.66777 * 0.02562 * 16 15 14 18 18 C 1.37851 * 120.45338 * 359.97438 * 17 16 15 19 19 C 1.38835 * 119.69041 * 359.71717 * 18 17 16 20 20 N 1.36036 * 124.95209 * 124.16224 * 12 11 9 21 21 H 0.96995 * 126.34436 * 0.02562 * 20 12 11 22 22 C 1.52991 * 109.47432 * 300.00508 * 9 7 2 23 23 F 1.39907 * 109.46948 * 306.53759 * 22 9 7 24 24 F 1.39906 * 109.47500 * 66.53154 * 22 9 7 25 25 F 1.39903 * 109.47551 * 186.53475 * 22 9 7 26 26 H 0.96997 * 120.01058 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47082 * 175.32680 * 11 9 7 28 28 H 1.09005 * 109.47335 * 55.33021 * 11 9 7 29 29 H 1.07994 * 120.05970 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.66549 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.77272 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.15545 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 6 2.2454 -3.6619 -0.0018 12 6 3.0329 -3.6483 -1.2867 13 7 2.5137 -3.6746 -2.4794 14 6 3.5034 -3.6510 -3.4087 15 6 3.5136 -3.6618 -4.8061 16 6 4.7024 -3.6294 -5.4782 17 6 5.9053 -3.5863 -4.7874 18 6 5.9193 -3.5749 -3.4090 19 6 4.7207 -3.6008 -2.7088 20 7 4.3901 -3.6062 -1.3685 21 1 5.0104 -3.5805 -0.6232 22 6 0.3719 -2.5806 1.2489 23 9 1.1559 -2.3577 2.3860 24 9 -0.6320 -1.6088 1.1769 25 9 -0.2121 -3.8495 1.3264 26 1 -0.4851 0.8399 0.0004 27 1 1.7031 -4.6038 0.0819 28 1 2.9265 -3.5586 0.8429 29 1 2.5834 -3.6957 -5.3536 30 1 4.7063 -3.6383 -6.5582 31 1 6.8367 -3.5606 -5.3334 32 1 6.8582 -3.5417 -2.8762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575423479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:09 Heat of formation + Delta-G solvation = -96.207595 kcal Electronic energy + Delta-G solvation = -22431.552222 eV Core-core repulsion = 18556.187650 eV Total energy + Delta-G solvation = -3875.364572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.083 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.39167 -48.00263 -47.65511 -42.98839 -38.34306 -36.29020 -34.05128 -33.65487 -30.85058 -30.21093 -27.59906 -26.48002 -23.46739 -23.08044 -22.66974 -21.39713 -19.31902 -18.91253 -18.62985 -18.37403 -18.10219 -17.09640 -16.64452 -16.10473 -16.07207 -15.28185 -15.11631 -14.86895 -14.77851 -14.50522 -14.43651 -14.24875 -14.05714 -13.90796 -13.81682 -13.09651 -12.93006 -12.74666 -12.67061 -12.41578 -12.35304 -12.13793 -11.81359 -11.52066 -11.28052 -10.80692 -10.63651 -9.22575 -8.98322 -8.16500 -6.39997 0.09698 0.66808 1.36286 1.38329 1.48220 1.86022 2.06695 2.33405 2.53514 2.99633 3.02647 3.28411 3.66075 3.84287 3.91641 3.97777 4.23685 4.27384 4.30893 4.51318 4.59652 4.63850 4.65146 4.76670 4.96572 5.21595 5.33522 5.55040 5.63012 5.65380 5.70214 5.92080 6.08141 6.53341 6.61678 7.07025 7.28143 8.77901 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.006133 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.686960 B = 4564.456484 C = 5375.645630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.068 0.932 9 C 0.024 3.976 10 H 0.047 0.953 11 C -0.033 4.033 12 C 0.317 3.683 13 N -0.532 5.532 14 C 0.010 3.990 15 C -0.093 4.093 16 C -0.123 4.123 17 C -0.104 4.104 18 C -0.114 4.114 19 C 0.027 3.973 20 N -0.588 5.588 21 H 0.434 0.566 22 C 0.435 3.565 23 F -0.201 7.201 24 F -0.160 7.160 25 F -0.216 7.216 26 H 0.263 0.737 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 -7.057 -4.812 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.004 3.996 10 H 0.065 0.935 11 C -0.072 4.072 12 C 0.050 3.950 13 N -0.253 5.253 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.143 4.143 17 C -0.123 4.123 18 C -0.135 4.135 19 C -0.083 4.083 20 N -0.200 5.200 21 H 0.275 0.725 22 C 0.380 3.620 23 F -0.183 7.183 24 F -0.141 7.141 25 F -0.198 7.198 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.676 -6.975 -5.027 13.707 hybrid contribution 0.584 1.084 1.001 1.587 sum 11.260 -5.891 -4.026 13.330 Atomic orbital electron populations 1.70457 1.06882 1.27341 1.46597 1.25842 0.95795 1.02951 0.94234 0.85509 0.79146 0.79529 0.77587 1.18870 1.20926 1.20270 1.20975 0.93192 0.89420 1.53228 0.91428 1.19688 0.93650 0.95910 0.90388 0.93527 1.20196 0.97077 0.99369 0.90512 1.23181 0.80798 0.95677 0.95350 1.70339 1.32266 1.24030 0.98660 1.19679 0.89088 1.06678 0.95403 1.20281 1.00114 1.01171 0.89704 1.20998 0.91025 1.00901 1.01381 1.21317 0.99400 0.99028 0.92537 1.20361 0.94341 1.04058 0.94701 1.19272 0.97510 1.07370 0.84126 1.42987 1.07564 1.62517 1.06974 0.72492 1.22357 0.80666 0.71870 0.87132 1.92999 1.75204 1.94674 1.55400 1.93324 1.62847 1.61789 1.96131 1.93027 1.86395 1.43331 1.97033 0.92684 0.88269 0.87921 0.85796 0.82413 0.81597 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.93 9.61 21.45 0.21 -49.72 16 2 C 0.02 0.84 5.27 84.65 0.45 1.28 16 3 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.53 -27.53 7.63 25.60 0.20 -27.34 16 8 H 0.07 3.39 7.60 -2.91 -0.02 3.37 16 9 C 0.02 1.17 1.90 -11.55 -0.02 1.15 16 10 H 0.05 2.57 8.06 -2.39 -0.02 2.55 16 11 C -0.03 -1.24 5.06 29.85 0.15 -1.09 16 12 C 0.32 12.36 6.68 137.92 0.92 13.28 16 13 N -0.53 -23.25 11.15 -179.96 -2.01 -25.26 16 14 C 0.01 0.37 7.23 39.45 0.29 0.65 16 15 C -0.09 -2.90 10.05 22.25 0.22 -2.68 16 16 C -0.12 -2.78 9.96 22.02 0.22 -2.56 16 17 C -0.10 -2.06 10.03 22.31 0.22 -1.84 16 18 C -0.11 -2.70 10.07 22.32 0.22 -2.48 16 19 C 0.03 0.88 7.31 38.86 0.28 1.17 16 20 N -0.59 -18.67 6.23 -179.22 -1.12 -19.78 16 21 H 0.43 10.39 8.96 -92.71 -0.83 9.55 16 22 C 0.43 21.00 2.66 71.98 0.19 21.19 16 23 F -0.20 -9.37 16.68 44.97 0.75 -8.62 16 24 F -0.16 -8.73 13.27 44.97 0.60 -8.14 16 25 F -0.22 -9.46 16.46 44.97 0.74 -8.72 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 27 H 0.10 3.48 7.50 -2.39 -0.02 3.47 16 28 H 0.10 3.42 8.09 -2.38 -0.02 3.40 16 29 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -67.18 288.85 4.89 -62.29 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.35 Total: 12.08 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 3.34 Total: 0.74 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -2.92 Total: -94.76 kcal Atomic # 9 Polarization: -27.57 SS G_CDS: 2.09 Total: -25.48 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.18 4.89 -62.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575423479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.916 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds