Wall clock time and date at job start Tue Mar 31 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09005 * 109.46722 * 305.73434 * 3 2 1 5 5 C 1.50692 * 109.47282 * 185.73485 * 3 2 1 6 6 H 1.08010 * 120.00061 * 334.90363 * 5 3 2 7 7 C 1.37876 * 120.00442 * 154.90874 * 5 3 2 8 8 N 1.31514 * 119.99396 * 5.67687 * 7 5 3 9 9 Si 1.86803 * 120.00221 * 185.67810 * 7 5 3 10 10 H 1.48495 * 109.46899 * 269.99558 * 9 7 5 11 11 H 1.48494 * 109.47275 * 30.00017 * 9 7 5 12 12 H 1.48495 * 109.46885 * 150.00093 * 9 7 5 13 13 N 1.46493 * 109.47105 * 65.73083 * 3 2 1 14 14 C 1.34777 * 120.00456 * 275.00134 * 13 3 2 15 15 O 1.21908 * 119.99782 * 0.02562 * 14 13 3 16 16 C 1.40393 * 120.00456 * 179.97438 * 14 13 3 17 17 C 1.36437 * 120.00157 * 179.97438 * 16 14 13 18 18 S 1.77255 * 126.26726 * 0.02994 * 17 16 14 19 19 C 1.82380 * 94.47071 * 179.97438 * 18 17 16 20 20 C 1.51121 * 103.49355 * 359.97438 * 19 18 17 21 21 O 1.21257 * 122.89906 * 180.02562 * 20 19 18 22 22 N 1.32205 * 114.20303 * 359.75817 * 20 19 18 23 23 C 1.46505 * 119.81991 * 180.25275 * 22 20 19 24 24 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 25 25 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 27 27 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 28 28 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 29 29 H 0.96998 * 120.00251 * 355.09094 * 8 7 5 30 30 H 0.97008 * 119.99940 * 95.00345 * 13 3 2 31 31 H 1.07995 * 120.00130 * 0.02562 * 16 14 13 32 32 H 1.08995 * 110.62031 * 118.50367 * 19 18 17 33 33 H 1.09010 * 110.61671 * 241.49853 * 19 18 17 34 34 H 1.09000 * 109.46888 * 270.23122 * 23 22 20 35 35 H 1.09002 * 109.46979 * 30.22149 * 23 22 20 36 36 H 1.08992 * 109.47293 * 150.22251 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5402 1.4449 -0.1420 6 1 4.1139 0.5859 0.1737 7 6 4.1806 2.5436 -0.6747 8 7 3.4967 3.6313 -0.9552 9 14 6.0196 2.4871 -0.9980 10 1 6.7487 2.9571 0.2072 11 1 6.4249 1.0928 -1.3094 12 1 6.3470 3.3665 -2.1489 13 7 1.6676 2.0921 1.2591 14 6 0.4518 2.6586 1.3914 15 8 -0.3382 2.6299 0.4634 16 6 0.0947 3.2807 2.5982 17 6 -1.1359 3.8545 2.7319 18 16 -2.4064 3.9107 1.4972 19 6 -3.5864 4.8207 2.5487 20 6 -2.8327 5.0067 3.8452 21 8 -3.3036 5.5797 4.8044 22 7 -1.6176 4.4858 3.8452 23 6 -0.7801 4.5906 5.0427 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5320 3.6371 -0.8546 30 1 2.2961 2.1147 1.9977 31 1 0.7943 3.3057 3.4205 32 1 -3.8312 5.7856 2.1047 33 1 -4.4892 4.2317 2.7110 34 1 -0.1940 5.5085 4.9970 35 1 -1.4142 4.6082 5.9291 36 1 -0.1091 3.7331 5.0930 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821955439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:46 Heat of formation + Delta-G solvation = -46.469066 kcal Electronic energy + Delta-G solvation = -20437.634287 eV Core-core repulsion = 17241.727231 eV Total energy + Delta-G solvation = -3195.907056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11622 -39.17107 -37.03746 -35.20551 -32.21725 -31.94528 -31.27492 -30.61860 -27.22237 -26.55702 -24.07951 -22.87367 -20.62106 -19.91725 -19.48547 -18.19302 -17.35392 -16.83004 -16.74599 -15.95690 -15.35262 -14.79938 -14.39779 -14.32130 -14.12137 -13.82232 -13.41056 -13.04516 -12.91932 -12.63196 -12.49974 -12.25171 -11.96859 -11.56377 -11.15842 -11.06244 -10.81491 -10.72076 -10.41967 -10.32888 -10.18175 -9.78690 -9.02154 -8.88759 -8.70464 -8.58957 -7.91691 -7.40344 -6.53625 -4.33825 0.91748 1.23174 1.77605 2.25941 2.49801 3.34101 3.39024 3.54917 3.77730 4.06791 4.38854 4.46134 4.76484 4.84436 5.06435 5.09712 5.14250 5.37434 5.41721 5.62026 5.87101 6.04651 6.09198 6.12354 6.31131 6.68678 6.71944 6.87357 6.99159 7.11729 7.33084 7.35522 7.71261 7.92003 8.27889 8.63023 8.80999 9.22214 9.46569 10.84718 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.004549 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.018174 B = 6154.100703 C = 6647.648529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.244 3.756 4 H 0.054 0.946 5 C -0.610 4.610 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.890 5.890 9 Si 1.071 2.929 10 H -0.287 1.287 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.535 3.465 15 O -0.552 6.552 16 C -0.226 4.226 17 C 0.154 3.846 18 S 0.037 5.963 19 C -0.200 4.200 20 C 0.525 3.475 21 O -0.501 6.501 22 N -0.546 5.546 23 C 0.066 3.934 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.279 0.721 30 H 0.386 0.614 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 0.428 9.388 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.072 0.928 5 C -0.649 4.649 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.524 5.524 9 Si 0.899 3.101 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.341 5.341 14 C 0.324 3.676 15 O -0.437 6.437 16 C -0.264 4.264 17 C -0.059 4.059 18 S 0.277 5.723 19 C -0.350 4.350 20 C 0.312 3.688 21 O -0.376 6.376 22 N -0.268 5.268 23 C -0.078 4.078 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.220 0.780 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.789 1.268 7.540 11.650 hybrid contribution -0.659 -0.413 2.367 2.492 sum -9.448 0.854 9.907 13.717 Atomic orbital electron populations 1.21844 0.96940 0.98501 1.02451 1.21823 0.94293 0.99134 1.00344 1.18913 0.94886 0.88541 0.83254 0.92797 1.22135 0.91306 1.05155 1.46302 0.92635 1.25980 1.07018 0.91950 0.92846 1.70706 1.10246 1.27368 1.44057 0.83519 0.73915 0.75652 0.77027 1.21383 1.21227 1.20889 1.47443 1.13273 1.54939 1.18428 1.16396 0.83917 0.80259 0.87022 1.90718 1.50249 1.61382 1.41376 1.21114 0.94698 1.08704 1.01907 1.22350 0.98279 0.96627 0.88629 1.88121 1.04559 1.66906 1.12693 1.24728 1.04541 1.08390 0.97383 1.19831 0.80814 0.78208 0.89917 1.90780 1.69010 1.40795 1.37050 1.44595 1.15859 1.52208 1.14142 1.22087 0.95565 1.03834 0.86290 0.92862 0.95482 0.92935 0.92468 0.93798 0.90953 0.78044 0.84472 0.84237 0.84270 0.90752 0.89344 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.53 37.16 0.32 -2.44 16 2 C -0.12 -2.47 5.58 -26.73 -0.15 -2.62 16 3 C 0.24 5.82 1.80 -69.09 -0.12 5.70 16 4 H 0.05 1.49 6.37 -51.93 -0.33 1.16 16 5 C -0.61 -15.72 8.50 -34.44 -0.29 -16.02 16 6 H 0.06 1.42 7.82 -52.48 -0.41 1.01 16 7 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 8 N -0.89 -25.60 13.63 55.43 0.76 -24.84 16 9 Si 1.07 23.52 29.91 -169.99 -5.08 18.44 16 10 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.69 -14.51 5.02 -58.17 -0.29 -14.80 16 14 C 0.54 10.66 6.12 -15.45 -0.09 10.56 16 15 O -0.55 -12.22 11.24 5.00 0.06 -12.16 16 16 C -0.23 -3.59 9.14 -39.42 -0.36 -3.95 16 17 C 0.15 2.27 7.00 -16.01 -0.11 2.16 16 18 S 0.04 0.54 20.64 -107.50 -2.22 -1.68 16 19 C -0.20 -2.14 7.36 36.21 0.27 -1.87 16 20 C 0.52 6.80 7.79 -11.91 -0.09 6.71 16 21 O -0.50 -7.53 16.94 5.58 0.09 -7.43 16 22 N -0.55 -6.98 2.95 -122.27 -0.36 -7.34 16 23 C 0.07 0.66 10.06 59.85 0.60 1.26 16 24 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.05 5.63 -51.93 -0.29 0.76 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.28 8.23 6.78 -40.82 -0.28 7.95 16 30 H 0.39 7.46 8.55 -40.82 -0.35 7.11 16 31 H 0.14 1.77 6.71 -52.49 -0.35 1.41 16 32 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.14 1.19 8.14 -51.92 -0.42 0.76 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.83 7.50 -51.93 -0.39 0.44 16 36 H 0.09 0.74 6.61 -51.93 -0.34 0.40 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -31.04 311.66 -6.97 -38.01 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.49 Total: 6.89 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.14 Total: 0.22 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.10 Total: -46.98 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.15 Total: -19.59 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.08 Total: 18.44 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.22 Total: -1.68 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.04 -6.97 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821955439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.458 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds