Wall clock time and date at job start Tue Mar 31 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09005 * 109.46722 * 305.73434 * 3 2 1 5 5 C 1.50692 * 109.47282 * 185.73485 * 3 2 1 6 6 H 1.08010 * 120.00061 * 334.90363 * 5 3 2 7 7 C 1.37876 * 120.00442 * 154.90874 * 5 3 2 8 8 N 1.31514 * 119.99396 * 5.67687 * 7 5 3 9 9 Si 1.86803 * 120.00221 * 185.67810 * 7 5 3 10 10 H 1.48495 * 109.46899 * 269.99558 * 9 7 5 11 11 H 1.48494 * 109.47275 * 30.00017 * 9 7 5 12 12 H 1.48495 * 109.46885 * 150.00093 * 9 7 5 13 13 N 1.46493 * 109.47105 * 65.73083 * 3 2 1 14 14 C 1.34777 * 120.00456 * 275.00134 * 13 3 2 15 15 O 1.21908 * 119.99782 * 0.02562 * 14 13 3 16 16 C 1.40393 * 120.00456 * 179.97438 * 14 13 3 17 17 C 1.36437 * 120.00157 * 179.97438 * 16 14 13 18 18 S 1.77255 * 126.26726 * 0.02994 * 17 16 14 19 19 C 1.82380 * 94.47071 * 179.97438 * 18 17 16 20 20 C 1.51121 * 103.49355 * 359.97438 * 19 18 17 21 21 O 1.21257 * 122.89906 * 180.02562 * 20 19 18 22 22 N 1.32205 * 114.20303 * 359.75817 * 20 19 18 23 23 C 1.46505 * 119.81991 * 180.25275 * 22 20 19 24 24 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 25 25 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 27 27 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 28 28 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 29 29 H 0.96998 * 120.00251 * 355.09094 * 8 7 5 30 30 H 0.97008 * 119.99940 * 95.00345 * 13 3 2 31 31 H 1.07995 * 120.00130 * 0.02562 * 16 14 13 32 32 H 1.08995 * 110.62031 * 118.50367 * 19 18 17 33 33 H 1.09010 * 110.61671 * 241.49853 * 19 18 17 34 34 H 1.09000 * 109.46888 * 270.23122 * 23 22 20 35 35 H 1.09002 * 109.46979 * 30.22149 * 23 22 20 36 36 H 1.08992 * 109.47293 * 150.22251 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5402 1.4449 -0.1420 6 1 4.1139 0.5859 0.1737 7 6 4.1806 2.5436 -0.6747 8 7 3.4967 3.6313 -0.9552 9 14 6.0196 2.4871 -0.9980 10 1 6.7487 2.9571 0.2072 11 1 6.4249 1.0928 -1.3094 12 1 6.3470 3.3665 -2.1489 13 7 1.6676 2.0921 1.2591 14 6 0.4518 2.6586 1.3914 15 8 -0.3382 2.6299 0.4634 16 6 0.0947 3.2807 2.5982 17 6 -1.1359 3.8545 2.7319 18 16 -2.4064 3.9107 1.4972 19 6 -3.5864 4.8207 2.5487 20 6 -2.8327 5.0067 3.8452 21 8 -3.3036 5.5797 4.8044 22 7 -1.6176 4.4858 3.8452 23 6 -0.7801 4.5906 5.0427 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5320 3.6371 -0.8546 30 1 2.2961 2.1147 1.9977 31 1 0.7943 3.3057 3.4205 32 1 -3.8312 5.7856 2.1047 33 1 -4.4892 4.2317 2.7110 34 1 -0.1940 5.5085 4.9970 35 1 -1.4142 4.6082 5.9291 36 1 -0.1091 3.7331 5.0930 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821955439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:46 Heat of formation + Delta-G solvation = -67.306909 kcal Electronic energy + Delta-G solvation = -20438.537884 eV Core-core repulsion = 17241.727231 eV Total energy + Delta-G solvation = -3196.810653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18043 -40.73661 -38.19931 -36.95452 -34.14737 -33.45187 -32.37847 -31.84431 -28.67504 -27.85223 -25.54406 -24.59474 -22.13622 -21.24024 -20.91481 -19.56632 -18.96137 -17.94149 -17.82835 -17.43759 -16.78315 -16.34219 -15.82042 -15.59310 -15.41792 -14.99359 -14.94924 -14.82994 -14.22855 -13.98359 -13.81286 -13.41126 -13.14896 -12.84850 -12.69562 -12.53779 -12.44819 -12.25299 -12.06366 -11.89115 -11.64069 -11.46876 -10.73309 -10.67579 -10.36284 -10.01219 -9.53768 -8.72697 -8.62132 -6.44130 -0.29829 0.11533 0.75401 1.18518 1.43722 1.58468 1.66212 1.84034 2.55782 2.58176 2.68637 2.93438 3.43496 3.98095 4.04610 4.07593 4.28783 4.33944 4.34658 4.42110 4.44539 4.54275 4.65835 4.69528 4.92068 5.02064 5.14796 5.25797 5.38594 5.56681 5.62209 5.86711 6.11859 6.20406 6.30872 6.53841 7.12456 7.44555 7.65657 8.73031 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.004549 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.018174 B = 6154.100703 C = 6647.648529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.250 3.750 4 H 0.007 0.993 5 C -0.615 4.615 6 H 0.059 0.941 7 C -0.016 4.016 8 N -0.922 5.922 9 Si 1.119 2.881 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.697 5.697 14 C 0.533 3.467 15 O -0.581 6.581 16 C -0.249 4.249 17 C 0.177 3.823 18 S -0.012 6.012 19 C -0.178 4.178 20 C 0.524 3.476 21 O -0.519 6.519 22 N -0.545 5.545 23 C 0.057 3.943 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.260 0.740 30 H 0.395 0.605 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 0.138 11.074 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.148 3.852 4 H 0.026 0.974 5 C -0.653 4.653 6 H 0.077 0.923 7 C -0.218 4.218 8 N -0.557 5.557 9 Si 0.941 3.059 10 H -0.196 1.196 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.346 5.346 14 C 0.324 3.676 15 O -0.468 6.468 16 C -0.286 4.286 17 C -0.037 4.037 18 S 0.229 5.771 19 C -0.328 4.328 20 C 0.312 3.688 21 O -0.396 6.396 22 N -0.266 5.266 23 C -0.085 4.085 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.229 0.771 31 H 0.184 0.816 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.010 0.966 9.264 12.959 hybrid contribution -0.790 -0.290 1.895 2.074 sum -9.800 0.675 11.159 14.867 Atomic orbital electron populations 1.21681 0.95760 0.99819 1.01115 1.21743 0.95276 0.97337 1.00730 1.18613 0.93853 0.89625 0.83093 0.97450 1.22416 0.92351 1.04956 1.45621 0.92289 1.27331 1.10684 0.91555 0.92216 1.70846 1.09173 1.28784 1.46934 0.82909 0.69485 0.76400 0.77152 1.19612 1.19370 1.21690 1.46936 1.14240 1.55780 1.17597 1.16782 0.83024 0.79718 0.88043 1.90720 1.50959 1.62251 1.42831 1.20851 0.96101 1.10445 1.01248 1.22303 0.97597 0.94921 0.88879 1.88319 1.06392 1.67592 1.14793 1.24845 1.03782 1.09241 0.94915 1.20135 0.80798 0.77581 0.90245 1.90787 1.69318 1.41618 1.37829 1.44744 1.16240 1.51394 1.14253 1.22349 0.95771 1.05133 0.85269 0.94974 0.92668 0.93487 0.92869 0.92407 0.92963 0.77067 0.81594 0.81870 0.81457 0.89892 0.88682 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 8.53 71.98 0.61 -4.33 16 2 C -0.11 -4.72 5.58 30.59 0.17 -4.55 16 3 C 0.25 12.21 1.80 44.25 0.08 12.29 16 4 H 0.01 0.44 6.37 -2.38 -0.02 0.42 16 5 C -0.62 -31.92 8.50 25.60 0.22 -31.71 16 6 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 7 C -0.02 -0.86 5.45 84.65 0.46 -0.40 16 8 N -0.92 -54.56 13.63 21.45 0.29 -54.27 16 9 Si 1.12 47.12 29.91 68.60 2.05 49.17 16 10 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 12 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.70 -29.56 5.02 -456.09 -2.29 -31.85 16 14 C 0.53 21.49 6.12 84.77 0.52 22.01 16 15 O -0.58 -26.47 11.24 -5.02 -0.06 -26.52 16 16 C -0.25 -7.67 9.14 22.37 0.20 -7.47 16 17 C 0.18 5.02 7.00 83.51 0.58 5.60 16 18 S -0.01 -0.35 20.64 -56.49 -1.17 -1.52 16 19 C -0.18 -3.32 7.36 71.37 0.53 -2.79 16 20 C 0.52 12.28 7.79 88.19 0.69 12.97 16 21 O -0.52 -14.31 16.94 -2.96 -0.05 -14.36 16 22 N -0.54 -12.76 2.95 -660.56 -1.95 -14.71 16 23 C 0.06 1.00 10.06 127.77 1.29 2.29 16 24 H 0.03 1.36 7.88 -2.38 -0.02 1.34 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.88 5.63 -2.39 -0.01 1.86 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.26 16.09 6.78 -92.71 -0.63 15.46 16 30 H 0.40 15.23 8.55 -92.70 -0.79 14.43 16 31 H 0.17 3.97 6.71 -2.91 -0.02 3.95 16 32 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.17 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.56 7.50 -2.39 -0.02 1.54 16 36 H 0.11 1.48 6.61 -2.39 -0.02 1.46 16 Total: -1.00 -68.70 311.66 2.65 -66.05 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.46 Total: 24.11 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.35 Total: 3.90 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.94 Total: -100.83 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.11 Total: -40.89 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.05 Total: 49.17 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.17 Total: -1.52 kcal Total: -68.70 2.65 -66.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821955439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.254 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds