Wall clock time and date at job start Tue Mar 31 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47213 * 2 1 4 4 C 1.50704 * 109.47135 * 239.99878 * 2 1 3 5 5 H 1.07997 * 119.99874 * 245.45911 * 4 2 1 6 6 C 1.37877 * 119.99828 * 65.45140 * 4 2 1 7 7 N 1.31513 * 120.00209 * 9.62252 * 6 4 2 8 8 Si 1.86796 * 119.99995 * 189.62061 * 6 4 2 9 9 H 1.48503 * 109.47425 * 84.99801 * 8 6 4 10 10 H 1.48501 * 109.47301 * 204.99913 * 8 6 4 11 11 H 1.48496 * 109.47281 * 324.99801 * 8 6 4 12 12 N 1.46503 * 109.47229 * 120.00050 * 2 1 3 13 13 C 1.46502 * 119.99987 * 59.99836 * 12 2 1 14 14 C 1.34773 * 119.99593 * 239.99670 * 12 2 1 15 15 O 1.21901 * 120.00532 * 0.02562 * 14 12 2 16 16 C 1.40403 * 119.99778 * 179.97438 * 14 12 2 17 17 C 1.36435 * 120.00037 * 180.02562 * 16 14 12 18 18 S 1.77247 * 126.26940 * 0.02562 * 17 16 14 19 19 C 1.82381 * 94.47159 * 179.97438 * 18 17 16 20 20 C 1.51113 * 103.49541 * 359.97438 * 19 18 17 21 21 O 1.21255 * 122.90149 * 179.97438 * 20 19 18 22 22 N 1.32218 * 114.20440 * 0.02562 * 20 19 18 23 23 C 1.46494 * 119.82054 * 179.97438 * 22 20 19 24 24 H 1.09004 * 109.46815 * 183.29254 * 1 2 3 25 25 H 1.08998 * 109.46700 * 303.28182 * 1 2 3 26 26 H 1.08997 * 109.47024 * 63.28650 * 1 2 3 27 27 H 0.96997 * 120.00376 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.46737 * 270.00001 * 13 12 2 29 29 H 1.08998 * 109.47184 * 30.00055 * 13 12 2 30 30 H 1.09001 * 109.46714 * 149.99642 * 13 12 2 31 31 H 1.08007 * 119.99858 * 0.02562 * 16 14 12 32 32 H 1.09003 * 110.61954 * 118.50731 * 19 18 17 33 33 H 1.09000 * 110.61618 * 241.49674 * 19 18 17 34 34 H 1.09003 * 109.47132 * 269.99851 * 23 22 20 35 35 H 1.09003 * 109.47001 * 29.99813 * 23 22 20 36 36 H 1.09000 * 109.47356 * 149.99734 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7944 -0.1775 -2.4796 7 7 1.3001 1.0359 -2.5936 8 14 2.1742 -1.1789 -4.0101 9 1 1.0213 -2.0609 -4.3233 10 1 2.4212 -0.2627 -5.1524 11 1 3.3820 -2.0091 -3.7714 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0832 15 8 3.0874 1.1316 1.8906 16 6 3.2609 -0.6973 3.2299 17 6 4.0449 -0.0341 4.1282 18 16 4.5715 1.6546 4.0144 19 6 5.5126 1.6155 5.5762 20 6 5.3155 0.2015 6.0714 21 8 5.8021 -0.2087 7.1035 22 7 4.5675 -0.5501 5.2817 23 6 4.2973 -1.9435 5.6442 24 1 -0.3633 -1.0260 0.0590 25 1 -0.3633 0.5639 0.8591 26 1 -0.3633 0.4620 -0.9180 27 1 1.1331 1.4110 -3.4724 28 1 0.7376 -2.1443 1.9994 29 1 1.5295 -2.5969 0.4709 30 1 2.4630 -2.5819 1.9863 31 1 2.9999 -1.7313 3.4008 32 1 6.5685 1.8148 5.3931 33 1 5.1038 2.3319 6.2887 34 1 5.0698 -2.5855 5.2209 35 1 4.2967 -2.0430 6.7297 36 1 3.3242 -2.2389 5.2519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874358897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:02 Heat of formation + Delta-G solvation = -45.592942 kcal Electronic energy + Delta-G solvation = -20311.551106 eV Core-core repulsion = 17115.682041 eV Total energy + Delta-G solvation = -3195.869065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16243 -40.78663 -38.15559 -37.03335 -34.75154 -32.94486 -32.05202 -31.02812 -27.95558 -27.50611 -27.21137 -25.45590 -22.71449 -21.07232 -20.19479 -19.03249 -18.42702 -18.16229 -17.79685 -17.32613 -17.03576 -16.34510 -15.99256 -15.74526 -15.32588 -14.91625 -14.72731 -14.31128 -14.01473 -13.77767 -13.59917 -13.44397 -13.32306 -12.89391 -12.77332 -12.63466 -12.61924 -12.49481 -12.21118 -12.20403 -12.02385 -11.47663 -11.17185 -10.51019 -10.34181 -10.00086 -9.35993 -8.69606 -8.11137 -6.24512 -0.30045 0.13195 0.77794 1.20271 1.43762 1.45174 1.45808 1.54910 2.38909 2.54052 2.62622 2.90594 3.17366 3.97848 4.00554 4.11516 4.27023 4.36829 4.41339 4.48277 4.60675 4.74926 4.79888 4.84247 4.91994 4.96479 5.08841 5.12578 5.53754 5.59858 5.66686 5.74053 6.08321 6.19786 6.33763 6.84357 6.93300 7.38473 7.56296 8.94837 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.004148 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.450840 B = 6749.224405 C = 7036.543508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.261 3.739 3 H 0.015 0.985 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.597 5.597 13 C 0.078 3.922 14 C 0.534 3.466 15 O -0.594 6.594 16 C -0.245 4.245 17 C 0.183 3.817 18 S -0.025 6.025 19 C -0.176 4.176 20 C 0.525 3.475 21 O -0.517 6.517 22 N -0.544 5.544 23 C 0.056 3.944 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.263 0.737 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.181 0.819 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -6.823 16.494 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.159 3.841 3 H 0.033 0.967 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.326 5.326 13 C -0.064 4.064 14 C 0.327 3.673 15 O -0.480 6.480 16 C -0.283 4.283 17 C -0.032 4.032 18 S 0.217 5.783 19 C -0.326 4.326 20 C 0.314 3.686 21 O -0.394 6.394 22 N -0.265 5.265 23 C -0.086 4.086 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.198 0.802 32 H 0.182 0.818 33 H 0.184 0.816 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.886 -5.331 16.106 17.655 hybrid contribution 0.150 -1.088 -0.390 1.165 sum 5.036 -6.419 15.716 17.707 Atomic orbital electron populations 1.21793 0.97401 0.99916 0.99251 1.18502 0.91218 0.92774 0.81644 0.96669 1.21578 1.36233 1.08541 0.91243 0.91887 1.25734 0.95131 0.95443 1.02077 1.70119 1.45737 1.15348 1.24609 0.85535 0.78882 0.78488 0.78501 1.19183 1.21534 1.19383 1.47972 1.49060 1.13279 1.22336 1.21898 1.01243 0.80614 1.02650 1.16832 0.79684 0.86433 0.84352 1.90736 1.60456 1.18839 1.77974 1.20818 1.08120 1.03080 0.96235 1.22314 0.95953 0.96343 0.88588 1.88536 1.58505 1.06760 1.24534 1.24838 1.09109 0.97283 1.01407 1.20087 0.77335 0.87948 0.83253 1.90791 1.48894 1.76503 1.23182 1.44738 1.46605 1.15750 1.19400 1.22400 1.04759 0.77768 1.03710 0.92775 0.95815 0.93348 0.92805 0.91508 0.91314 0.89050 0.80180 0.81764 0.81595 0.89443 0.88823 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 9.12 71.98 0.66 -5.22 16 2 C 0.26 13.47 2.50 44.25 0.11 13.58 16 3 H 0.02 0.96 6.84 -2.39 -0.02 0.94 16 4 C -0.54 -28.99 8.01 25.60 0.20 -28.78 16 5 H 0.06 3.27 7.16 -2.91 -0.02 3.25 16 6 C 0.02 0.87 5.17 84.65 0.44 1.31 16 7 N -0.92 -53.98 12.16 21.45 0.26 -53.72 16 8 Si 0.96 42.83 29.55 68.60 2.03 44.86 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.60 -24.72 2.75 -838.59 -2.31 -27.03 16 13 C 0.08 2.29 9.04 127.77 1.15 3.44 16 14 C 0.53 21.78 7.41 84.77 0.63 22.40 16 15 O -0.59 -29.31 13.43 -4.99 -0.07 -29.38 16 16 C -0.25 -7.03 8.43 22.38 0.19 -6.84 16 17 C 0.18 4.90 7.00 83.50 0.58 5.48 16 18 S -0.03 -0.72 20.64 -56.49 -1.17 -1.88 16 19 C -0.18 -3.17 7.36 71.37 0.53 -2.64 16 20 C 0.53 11.52 7.79 88.18 0.69 12.20 16 21 O -0.52 -13.44 16.93 -2.95 -0.05 -13.49 16 22 N -0.54 -11.60 2.95 -660.57 -1.95 -13.55 16 23 C 0.06 0.80 10.07 127.77 1.29 2.09 16 24 H 0.05 2.24 7.56 -2.39 -0.02 2.22 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 2.52 6.84 -2.39 -0.02 2.50 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.19 6.92 -2.39 -0.02 2.17 16 30 H 0.09 1.96 6.08 -2.39 -0.01 1.95 16 31 H 0.18 3.58 4.71 -2.91 -0.01 3.56 16 32 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.17 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.30 7.49 -2.39 -0.02 1.28 16 36 H 0.11 1.12 6.61 -2.39 -0.02 1.11 16 Total: -1.00 -74.28 310.86 4.32 -69.96 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.10 Total: 7.23 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 6.46 Total: 17.02 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.00 Total: -94.30 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.12 Total: -42.88 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.17 Total: -1.88 kcal Total: -74.28 4.32 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.367 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds