Wall clock time and date at job start Tue Mar 31 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.32210 * 119.81420 * 2 1 4 4 O 1.21249 * 122.90717 * 359.97438 * 3 2 1 5 5 C 1.51125 * 114.19523 * 180.02562 * 3 2 1 6 6 S 1.82381 * 103.49816 * 359.76691 * 5 3 2 7 7 C 1.36751 * 119.81216 * 180.02562 * 2 1 3 8 8 C 1.36437 * 126.26482 * 359.96080 * 7 2 1 9 9 C 1.40407 * 119.99566 * 179.97438 * 8 7 2 10 10 O 1.21902 * 119.99938 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99644 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47114 * 60.00582 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 H 1.09000 * 109.47646 * 269.98338 * 1 2 3 24 24 H 1.09000 * 109.47114 * 29.97762 * 1 2 3 25 25 H 1.08997 * 109.47767 * 149.97866 * 1 2 3 26 26 H 1.08998 * 110.61910 * 118.50404 * 5 3 2 27 27 H 1.09009 * 110.61288 * 241.33727 * 5 3 2 28 28 H 1.07994 * 120.00886 * 359.97438 * 8 7 2 29 29 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 30 30 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 31 31 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 32 32 H 1.09002 * 109.47153 * 300.00008 * 13 12 11 33 33 H 1.08998 * 109.47533 * 59.99637 * 13 12 11 34 34 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 35 35 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 36 36 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1223 1.1471 0.0000 4 8 1.5666 2.2248 -0.0005 5 6 3.6263 0.9991 -0.0006 6 16 3.8764 -0.8074 0.0061 7 6 2.1449 -1.1865 -0.0005 8 6 1.5916 -2.4337 -0.0003 9 6 2.4185 -3.5684 -0.0015 10 8 3.6307 -3.4393 -0.0031 11 7 1.8720 -4.8004 -0.0018 12 6 2.7348 -5.9844 -0.0025 13 6 1.8694 -7.2461 -0.0021 14 6 2.7704 -8.4826 -0.0034 15 6 1.9180 -9.7253 -0.0024 16 1 0.8412 -9.6416 -0.0014 17 6 2.5127 -10.9693 -0.0038 18 7 3.8239 -11.0713 -0.0056 19 14 1.4561 -12.5097 -0.0019 20 1 0.5963 -12.5218 -1.2126 21 1 2.3307 -13.7099 -0.0032 22 1 0.6013 -12.5221 1.2123 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 4.0557 1.4463 -0.8972 27 1 4.0565 1.4484 0.8946 28 1 0.5178 -2.5482 0.0007 29 1 0.9075 -4.9032 -0.0009 30 1 3.3639 -5.9751 -0.8926 31 1 3.3644 -5.9758 0.8874 32 1 1.2407 -7.2552 0.8883 33 1 1.2396 -7.2550 -0.8916 34 1 3.3988 -8.4733 -0.8940 35 1 3.4005 -8.4740 0.8860 36 1 4.2423 -11.9464 -0.0062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874371308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:36 Heat of formation + Delta-G solvation = -48.006773 kcal Electronic energy + Delta-G solvation = -19045.348253 eV Core-core repulsion = 15849.374517 eV Total energy + Delta-G solvation = -3195.973736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46320 -39.67182 -37.36592 -35.41713 -33.31167 -32.14087 -31.48645 -30.92286 -27.59076 -26.72758 -24.50732 -22.70876 -20.78569 -20.48631 -19.96866 -18.46746 -17.29608 -17.14494 -16.73687 -16.33939 -15.80152 -15.27683 -14.93258 -14.67456 -14.44974 -14.42345 -13.88273 -13.71085 -13.21983 -12.92379 -12.45404 -12.26898 -12.10578 -11.83029 -11.63681 -11.50124 -10.88358 -10.83880 -10.69780 -10.60872 -9.85529 -9.76692 -9.36672 -9.27496 -9.12609 -8.82646 -8.36720 -7.95916 -6.01511 -4.04692 0.46765 0.83673 1.39621 1.91162 2.11696 3.31989 3.36643 3.37296 3.38790 3.39343 3.72834 4.44418 4.47940 4.55217 4.72086 4.78651 4.85497 5.07095 5.22232 5.31965 5.34144 5.59242 5.80488 5.82219 6.18701 6.32620 6.51109 6.61798 6.85604 7.01614 7.02362 7.63848 7.73602 7.77006 7.97354 8.36989 8.41061 9.01893 9.59417 11.09763 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.049044 B = 0.002524 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.774888 B =11089.844921 C =11624.192416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.547 5.547 3 C 0.525 3.475 4 O -0.492 6.492 5 C -0.198 4.198 6 S 0.040 5.960 7 C 0.174 3.826 8 C -0.247 4.247 9 C 0.551 3.449 10 O -0.542 6.542 11 N -0.719 5.719 12 C 0.118 3.882 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.398 0.602 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 24.308 -0.052 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.270 5.270 3 C 0.313 3.687 4 O -0.366 6.366 5 C -0.348 4.348 6 S 0.282 5.718 7 C -0.040 4.040 8 C -0.286 4.286 9 C 0.341 3.659 10 O -0.425 6.425 11 N -0.369 5.369 12 C -0.005 4.005 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.162 0.838 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.232 0.768 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.564 24.336 -0.046 24.596 hybrid contribution -2.317 -0.359 0.004 2.345 sum -5.881 23.977 -0.042 24.688 Atomic orbital electron populations 1.22140 0.76631 1.05115 1.04063 1.44661 1.09715 1.04844 1.67733 1.19850 0.89491 0.83430 0.75968 1.90809 1.72318 1.25957 1.47491 1.24764 0.95904 1.03593 1.10529 1.88212 0.98419 0.95954 1.89246 1.22438 0.95560 0.88170 0.97808 1.20693 1.00914 0.89335 1.17629 1.16204 0.87996 0.83656 0.78004 1.90794 1.14522 1.85712 1.51474 1.45968 1.10523 1.05840 1.74569 1.21630 0.93464 0.83329 1.02057 1.21883 0.98984 0.94198 1.00823 1.19022 0.94575 0.90117 0.97663 1.21172 0.92966 0.90964 1.51039 0.92719 1.25030 0.94935 0.99205 0.95287 1.69956 1.08668 1.24187 1.50481 0.86645 0.80205 0.82480 0.78573 1.20253 1.21277 1.20258 0.90549 0.89088 0.89167 0.83794 0.83819 0.83800 0.76776 0.91686 0.91697 0.92761 0.92768 0.96267 0.96270 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.07 59.85 0.60 0.99 16 2 N -0.55 -4.84 2.95 -122.27 -0.36 -5.20 16 3 C 0.53 4.97 7.79 -11.91 -0.09 4.88 16 4 O -0.49 -5.86 16.93 5.58 0.09 -5.76 16 5 C -0.20 -1.42 7.36 36.21 0.27 -1.16 16 6 S 0.04 0.43 20.64 -107.50 -2.22 -1.79 16 7 C 0.17 1.79 7.00 -16.01 -0.11 1.68 16 8 C -0.25 -2.56 9.14 -39.42 -0.36 -2.92 16 9 C 0.55 7.76 7.52 -15.45 -0.12 7.65 16 10 O -0.54 -9.46 14.10 5.01 0.07 -9.39 16 11 N -0.72 -9.81 5.54 -63.56 -0.35 -10.16 16 12 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 13 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.09 0.56 7.49 -51.93 -0.39 0.17 16 25 H 0.09 0.39 6.61 -51.93 -0.34 0.05 16 26 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.14 1.00 6.71 -52.49 -0.35 0.65 16 29 H 0.40 4.24 8.42 -40.82 -0.34 3.89 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -33.98 322.24 -7.49 -41.48 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.77 Total: -2.21 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.53 Total: -2.16 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.02 Total: -41.34 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.17 Total: -15.16 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.22 Total: -1.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.98 -7.49 -41.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874371308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.528 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds