Wall clock time and date at job start Tue Mar 31 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38242 * 119.99724 * 179.74599 * 11 10 9 13 13 C 1.38231 * 119.99949 * 0.52391 * 12 11 10 14 14 S 1.76198 * 119.99963 * 179.76966 * 13 12 11 15 15 O 1.42100 * 106.40222 * 23.51929 * 14 13 12 16 16 O 1.42100 * 106.40108 * 156.43773 * 14 13 12 17 17 N 1.65597 * 107.21897 * 269.97887 * 14 13 12 18 18 C 1.46503 * 119.99916 * 65.00477 * 17 14 13 19 19 C 1.53000 * 109.47132 * 164.99803 * 18 17 14 20 20 N 1.46895 * 109.46953 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99960 * 359.74815 * 13 12 11 22 22 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.99633 * 180.29592 * 12 11 10 28 28 H 0.96993 * 119.99981 * 244.99753 * 17 14 13 29 29 H 1.09002 * 109.46466 * 284.99435 * 18 17 14 30 30 H 1.08995 * 109.47215 * 44.99599 * 18 17 14 31 31 H 1.08988 * 109.47054 * 299.99778 * 19 18 17 32 32 H 1.09003 * 109.47112 * 59.99542 * 19 18 17 33 33 H 1.00906 * 111.00141 * 179.97438 * 20 19 18 34 34 H 1.00903 * 111.00498 * 303.95487 * 20 19 18 35 35 H 1.08000 * 120.00181 * 179.97438 * 21 13 12 36 36 H 1.08003 * 120.00554 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6753 -4.1788 -1.1844 12 6 3.5777 -5.2260 -1.1798 13 6 4.0269 -5.7460 0.0196 14 16 5.1724 -7.0848 0.0255 15 8 5.8468 -7.0414 -1.2245 16 8 5.8472 -7.0300 1.2749 17 7 4.2893 -8.4856 0.0321 18 6 3.4449 -8.8245 -1.1162 19 6 3.0428 -10.2986 -1.0360 20 7 2.1957 -10.6383 -2.1870 21 6 3.5778 -5.2154 1.2144 22 6 2.6797 -4.1644 1.2098 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.3207 -3.7757 -2.1215 27 1 3.9289 -5.6403 -2.1133 28 1 4.3311 -9.0817 0.7961 29 1 2.5498 -8.2026 -1.1050 30 1 3.9982 -8.6485 -2.0386 31 1 3.9378 -10.9204 -1.0471 32 1 2.4895 -10.4746 -0.1135 33 1 1.9169 -11.6076 -2.1574 34 1 1.3909 -10.0316 -2.2353 35 1 3.9284 -5.6219 2.1516 36 1 2.3286 -3.7502 2.1434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886882184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:10 Heat of formation + Delta-G solvation = -89.280178 kcal Electronic energy + Delta-G solvation = -19763.841867 eV Core-core repulsion = 16566.078382 eV Total energy + Delta-G solvation = -3197.763485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23734 -38.39014 -37.45122 -36.97951 -35.60240 -34.18220 -33.32137 -31.96272 -29.25217 -27.96312 -25.60027 -23.77086 -23.10912 -22.46889 -20.55144 -19.04659 -18.60041 -18.38591 -17.66450 -16.86759 -16.69316 -16.22989 -15.96285 -15.87445 -15.29217 -15.18131 -14.86455 -14.63927 -14.45249 -13.93362 -13.48292 -13.41698 -13.38524 -13.22418 -13.14612 -12.91507 -12.69019 -12.64468 -12.37391 -12.14124 -12.04191 -11.65670 -11.44101 -10.66342 -10.52017 -9.96571 -9.95745 -9.61316 -8.27845 -6.40508 -0.63606 -0.06908 0.39458 1.37068 1.38697 1.51335 1.99506 2.34482 2.56124 2.81827 3.04928 3.30481 3.76710 3.88757 3.92752 3.98179 4.15697 4.15818 4.45497 4.47665 4.55790 4.59600 4.81350 4.91055 4.94634 5.09553 5.13802 5.24537 5.25672 5.33199 5.66700 5.85909 5.92070 6.07126 6.09421 6.22969 6.60390 6.71536 7.28788 8.82421 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.003820 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.149236 B = 7327.519591 C = 7905.154885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.047 3.953 10 C -0.004 4.004 11 C -0.154 4.154 12 C -0.020 4.020 13 C -0.701 4.701 14 S 2.731 3.269 15 O -0.983 6.983 16 O -0.984 6.984 17 N -1.102 6.102 18 C 0.108 3.892 19 C 0.060 3.940 20 N -0.860 5.860 21 C -0.019 4.019 22 C -0.156 4.156 23 H 0.267 0.733 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.130 0.870 27 H 0.156 0.844 28 H 0.429 0.571 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.357 0.643 34 H 0.349 0.651 35 H 0.156 0.844 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -20.949 -0.430 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.011 3.989 10 C -0.004 4.004 11 C -0.173 4.173 12 C -0.039 4.039 13 C -0.788 4.788 14 S 2.820 3.180 15 O -0.973 6.973 16 O -0.974 6.974 17 N -0.866 5.866 18 C -0.018 4.018 19 C -0.073 4.073 20 N -0.392 5.392 21 C -0.038 4.038 22 C -0.175 4.175 23 H 0.076 0.924 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.148 0.852 27 H 0.173 0.827 28 H 0.267 0.733 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.997 -20.477 -1.033 21.362 hybrid contribution -1.466 1.218 1.062 2.182 sum 4.531 -19.259 0.030 19.785 Atomic orbital electron populations 1.70055 1.07508 1.28092 1.50791 1.25856 0.95768 1.02950 0.94347 0.85403 0.78807 0.78807 0.78087 1.19253 1.20021 1.20044 1.21321 0.93060 0.91057 1.51698 0.92851 1.18275 0.92998 0.90747 0.96920 1.20828 0.93285 0.92301 0.93977 1.21312 0.99825 0.97984 0.98206 1.21049 0.92073 0.93576 0.97162 1.30785 1.24272 1.24272 0.99455 1.00614 0.72646 0.72455 0.72253 1.93541 1.71501 1.86849 1.45431 1.93542 1.72193 1.86895 1.44818 1.55104 1.64436 1.38344 1.28696 1.21395 0.94709 0.97971 0.87757 1.21855 0.98506 0.94169 0.92746 1.58556 1.26205 1.09988 1.44495 1.21034 0.92035 0.93415 0.97290 1.21311 0.99916 0.98091 0.98181 0.92367 0.96828 0.96751 0.85177 0.82661 0.73340 0.91080 0.90072 0.89849 0.93320 0.82872 0.83791 0.82599 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.29 21.45 0.28 -53.72 16 2 C 0.01 0.54 5.46 84.65 0.46 1.01 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -29.69 9.09 25.60 0.23 -29.45 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.05 2.42 5.10 29.10 0.15 2.57 16 10 C 0.00 -0.15 5.07 -19.87 -0.10 -0.25 16 11 C -0.15 -5.68 9.70 22.27 0.22 -5.46 16 12 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 13 C -0.70 -20.34 5.95 22.27 0.13 -20.21 16 14 S 2.73 67.23 5.74 -56.49 -0.32 66.91 16 15 O -0.98 -29.36 16.75 -128.00 -2.14 -31.50 16 16 O -0.98 -28.62 17.28 -128.00 -2.21 -30.84 16 17 N -1.10 -17.74 6.00 -187.49 -1.12 -18.87 16 18 C 0.11 1.64 6.48 86.38 0.56 2.20 16 19 C 0.06 0.66 6.93 86.30 0.60 1.26 16 20 N -0.86 -9.35 9.62 -186.74 -1.80 -11.15 16 21 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 22 C -0.16 -5.77 9.70 22.27 0.22 -5.55 16 23 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 25 H 0.01 0.76 8.08 -2.38 -0.02 0.74 16 26 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.16 3.93 7.62 -2.91 -0.02 3.91 16 28 H 0.43 4.71 8.65 -96.76 -0.84 3.88 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.41 7.75 -2.39 -0.02 1.40 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.40 16 33 H 0.36 2.60 9.08 -89.69 -0.81 1.78 16 34 H 0.35 3.30 8.99 -89.69 -0.81 2.50 16 35 H 0.16 3.92 7.62 -2.91 -0.02 3.89 16 36 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -71.28 324.54 -3.74 -75.02 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -1.34 Total: 13.19 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 2.89 Total: -54.64 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.64 Total: -83.74 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -4.36 Total: -62.34 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 67.23 SS G_CDS: -0.32 Total: 66.91 kcal Total: -71.28 -3.74 -75.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886882184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.264 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds