Wall clock time and date at job start Tue Mar 31 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99905 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99995 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 N 1.46500 * 114.26621 * 139.79206 * 15 14 13 17 17 C 1.46757 * 124.34876 * 146.20405 * 16 15 14 18 18 C 1.54660 * 105.38381 * 162.85348 * 17 16 15 19 19 C 1.54634 * 101.68218 * 25.76883 * 18 17 16 20 20 C 1.34422 * 124.34796 * 326.50224 * 16 15 14 21 21 O 1.21279 * 124.94506 * 0.42978 * 20 16 15 22 22 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 23 23 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 25 25 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 26 26 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 27 27 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 28 28 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 29 29 H 1.09006 * 110.24499 * 281.97967 * 17 16 15 30 30 H 1.09000 * 110.25026 * 43.98486 * 17 16 15 31 31 H 1.08993 * 111.19518 * 267.59522 * 18 17 16 32 32 H 1.09001 * 110.82372 * 143.77392 * 18 17 16 33 33 H 1.09002 * 110.48331 * 216.30984 * 19 18 17 34 34 H 1.08992 * 110.60301 * 93.72228 * 19 18 17 35 35 H 1.09001 * 113.46952 * 321.86856 * 22 13 11 36 36 H 1.08996 * 113.46849 * 92.31026 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.5112 -10.0084 1.0357 18 6 5.9847 -11.1037 0.0517 19 6 6.2740 -10.2763 -1.2222 20 6 5.3942 -9.0540 -1.0785 21 8 5.1094 -8.2933 -1.9791 22 6 2.7297 -7.8092 -0.0165 23 1 -0.4851 0.8400 -0.0004 24 1 3.1212 -3.7293 -0.8992 25 1 3.1279 -3.7332 0.8807 26 1 4.7224 -6.6035 -1.0299 27 1 4.8324 -5.7788 0.5838 28 1 4.0523 -7.8025 1.7636 29 1 6.3498 -9.6408 1.6272 30 1 4.7316 -10.4010 1.6884 31 1 5.1990 -11.8370 -0.1295 32 1 6.8908 -11.5871 0.4169 33 1 6.0003 -10.8405 -2.1138 34 1 7.3243 -9.9878 -1.2619 35 1 1.9144 -8.1821 0.6034 36 1 2.7319 -8.2428 -1.0165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888762538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:30 Heat of formation + Delta-G solvation = -19.219550 kcal Electronic energy + Delta-G solvation = -19639.428530 eV Core-core repulsion = 16444.703101 eV Total energy + Delta-G solvation = -3194.725428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31453 -39.44071 -37.32681 -36.68993 -32.45863 -32.40019 -30.06823 -27.98043 -27.54661 -26.00686 -25.41716 -22.94521 -22.40714 -19.46742 -18.94661 -17.71628 -17.30270 -17.01629 -16.54665 -15.53205 -15.26511 -15.13697 -14.78034 -14.31238 -14.16683 -13.93341 -13.68280 -13.48413 -13.01218 -12.74362 -12.72296 -12.49552 -12.43358 -11.94419 -11.78836 -11.49687 -11.14602 -11.03578 -10.98974 -10.74153 -10.01140 -9.79945 -9.39698 -9.04255 -9.03974 -8.51258 -8.21297 -6.47782 -6.19130 -3.89766 2.21652 2.36799 2.90598 3.15859 3.24583 3.29182 3.32990 3.63302 3.91145 3.98109 4.11110 4.22659 4.36587 4.53348 4.61051 4.77266 4.98375 5.01478 5.06544 5.15898 5.23762 5.34889 5.36937 5.47631 5.49543 5.55007 5.58783 5.67831 5.93568 6.00202 6.19058 6.32103 6.73813 7.62214 7.82519 7.89122 8.37944 8.56869 9.25956 10.88381 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.003125 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.862103 B = 8959.081515 C = 9318.155279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.566 3.434 12 O -0.514 6.514 13 N -0.647 5.647 14 C 0.082 3.918 15 C 0.116 3.884 16 N -0.609 5.609 17 C 0.101 3.899 18 C -0.132 4.132 19 C -0.156 4.156 20 C 0.515 3.485 21 O -0.520 6.520 22 C 0.097 3.903 23 H 0.268 0.732 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.000 -23.866 3.148 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.294 4.294 11 C 0.356 3.644 12 O -0.387 6.387 13 N -0.386 5.386 14 C -0.042 4.042 15 C 0.012 3.988 16 N -0.344 5.344 17 C -0.022 4.022 18 C -0.170 4.170 19 C -0.196 4.196 20 C 0.303 3.697 21 O -0.396 6.396 22 C -0.028 4.028 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.098 0.902 28 H 0.146 0.854 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.675 -23.379 2.712 27.220 hybrid contribution 2.016 1.238 0.026 2.366 sum 15.691 -22.141 2.737 27.275 Atomic orbital electron populations 1.70020 1.05956 1.27448 1.46902 1.24996 0.95038 0.99028 0.94542 0.86153 0.79389 0.81504 0.78363 1.20257 1.20742 1.19684 1.22861 0.94922 0.91568 1.58908 0.90911 1.85384 1.04914 0.96320 1.96720 1.23468 1.06487 0.94486 1.04956 1.19892 0.85144 0.84742 0.74625 1.90712 1.14711 1.84818 1.48497 1.49307 1.07776 1.05813 1.75663 1.23658 0.82870 0.94471 1.03201 1.22974 0.89960 0.86385 0.99474 1.48167 1.48812 1.27416 1.09979 1.22180 0.99237 0.87036 0.93737 1.22635 1.02875 0.97128 0.94339 1.22350 1.01253 0.95578 1.00397 1.21000 0.80122 0.86699 0.81878 1.90727 1.58866 1.47063 1.42931 1.23275 0.96725 0.81717 1.01084 0.92184 0.89205 0.89269 0.86896 0.90206 0.85369 0.90700 0.90003 0.89796 0.89053 0.87934 0.87677 0.90164 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.70 13.22 55.49 0.73 -25.97 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -15.68 9.50 30.94 0.29 -15.38 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.14 -3.17 5.98 36.00 0.22 -2.95 16 11 C 0.57 11.96 8.10 -10.99 -0.09 11.87 16 12 O -0.51 -12.79 16.64 5.56 0.09 -12.69 16 13 N -0.65 -10.57 3.69 -185.06 -0.68 -11.25 16 14 C 0.08 1.04 7.83 -8.37 -0.07 0.98 16 15 C 0.12 1.12 5.02 -67.66 -0.34 0.78 16 16 N -0.61 -4.77 3.18 -164.34 -0.52 -5.29 16 17 C 0.10 0.39 7.35 -3.03 -0.02 0.37 16 18 C -0.13 -0.36 7.19 -25.00 -0.18 -0.54 16 19 C -0.16 -0.80 6.86 -26.74 -0.18 -0.98 16 20 C 0.51 4.93 7.49 -10.86 -0.08 4.85 16 21 O -0.52 -7.34 14.49 5.56 0.08 -7.26 16 22 C 0.10 1.25 8.17 -8.50 -0.07 1.18 16 23 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 25 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 26 H 0.11 1.61 5.40 -51.93 -0.28 1.33 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.18 7.40 -51.93 -0.38 0.79 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -37.78 320.12 -8.18 -45.97 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.86 Total: -3.45 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.62 Total: 2.22 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.47 Total: -42.52 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.17 Total: -19.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -37.78 -8.18 -45.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888762538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.747 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds