Wall clock time and date at job start Tue Mar 31 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99674 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99905 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99995 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 N 1.46500 * 114.26621 * 139.79206 * 15 14 13 17 17 C 1.46757 * 124.34876 * 146.20405 * 16 15 14 18 18 C 1.54660 * 105.38381 * 162.85348 * 17 16 15 19 19 C 1.54634 * 101.68218 * 25.76883 * 18 17 16 20 20 C 1.34422 * 124.34796 * 326.50224 * 16 15 14 21 21 O 1.21279 * 124.94506 * 0.42978 * 20 16 15 22 22 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 23 23 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 25 25 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 26 26 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 27 27 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 28 28 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 29 29 H 1.09006 * 110.24499 * 281.97967 * 17 16 15 30 30 H 1.09000 * 110.25026 * 43.98486 * 17 16 15 31 31 H 1.08993 * 111.19518 * 267.59522 * 18 17 16 32 32 H 1.09001 * 110.82372 * 143.77392 * 18 17 16 33 33 H 1.09002 * 110.48331 * 216.30984 * 19 18 17 34 34 H 1.08992 * 110.60301 * 93.72228 * 19 18 17 35 35 H 1.09001 * 113.46952 * 321.86856 * 22 13 11 36 36 H 1.08996 * 113.46849 * 92.31026 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.5112 -10.0084 1.0357 18 6 5.9847 -11.1037 0.0517 19 6 6.2740 -10.2763 -1.2222 20 6 5.3942 -9.0540 -1.0785 21 8 5.1094 -8.2933 -1.9791 22 6 2.7297 -7.8092 -0.0165 23 1 -0.4851 0.8400 -0.0004 24 1 3.1212 -3.7293 -0.8992 25 1 3.1279 -3.7332 0.8807 26 1 4.7224 -6.6035 -1.0299 27 1 4.8324 -5.7788 0.5838 28 1 4.0523 -7.8025 1.7636 29 1 6.3498 -9.6408 1.6272 30 1 4.7316 -10.4010 1.6884 31 1 5.1990 -11.8370 -0.1295 32 1 6.8908 -11.5871 0.4169 33 1 6.0003 -10.8405 -2.1138 34 1 7.3243 -9.9878 -1.2619 35 1 1.9144 -8.1821 0.6034 36 1 2.7319 -8.2428 -1.0165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888762538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:29 Heat of formation + Delta-G solvation = -46.855103 kcal Electronic energy + Delta-G solvation = -19640.626897 eV Core-core repulsion = 16444.703101 eV Total energy + Delta-G solvation = -3195.923796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18653 -40.60095 -38.73773 -37.37833 -34.62547 -33.27299 -31.53829 -28.85196 -28.38392 -27.69464 -27.06179 -23.92935 -22.76354 -20.69698 -20.01236 -19.58756 -18.25092 -17.98896 -17.57304 -16.92547 -16.80360 -16.45795 -16.22718 -15.79206 -15.35381 -14.79364 -14.65181 -14.44104 -14.26434 -13.87731 -13.84738 -13.61361 -13.41403 -13.21026 -13.09666 -12.91345 -12.63589 -12.24118 -12.17061 -11.77613 -11.72798 -11.17629 -11.12061 -10.78592 -10.36050 -9.83036 -9.72649 -8.73571 -8.37986 -6.17961 1.09863 1.37423 1.40383 1.41854 1.51003 1.52688 1.71578 2.22603 2.24332 2.95992 3.09651 3.17988 3.42842 3.56119 3.70584 3.85118 3.97742 4.14643 4.17096 4.26638 4.32218 4.39296 4.45361 4.49823 4.68482 4.70343 4.77189 4.89622 4.96069 5.17123 5.30274 5.37934 5.58841 6.11340 6.16379 6.47149 6.96442 7.02571 7.13124 8.71599 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.003125 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.862103 B = 8959.081515 C = 9318.155279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.118 4.118 11 C 0.564 3.436 12 O -0.564 6.564 13 N -0.646 5.646 14 C 0.075 3.925 15 C 0.145 3.855 16 N -0.607 5.607 17 C 0.095 3.905 18 C -0.120 4.120 19 C -0.150 4.150 20 C 0.500 3.500 21 O -0.576 6.576 22 C 0.090 3.910 23 H 0.273 0.727 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.156 -25.159 4.614 31.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.824 3.176 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.269 4.269 11 C 0.353 3.647 12 O -0.442 6.442 13 N -0.382 5.382 14 C -0.048 4.048 15 C 0.040 3.960 16 N -0.340 5.340 17 C -0.026 4.026 18 C -0.158 4.158 19 C -0.190 4.190 20 C 0.290 3.710 21 O -0.457 6.457 22 C -0.034 4.034 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.129 0.871 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.179 0.821 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.902 -24.757 4.209 30.271 hybrid contribution 1.107 1.463 -0.458 1.891 sum 18.009 -23.294 3.751 29.682 Atomic orbital electron populations 1.70181 1.08014 1.28772 1.47764 1.26176 0.96030 1.03402 0.93534 0.84903 0.78206 0.75712 0.78825 1.19361 1.19954 1.18081 1.23183 0.95316 0.91805 1.59293 0.89996 1.85549 1.10117 0.99174 1.97044 1.23250 1.03650 0.93658 1.06309 1.19619 0.84919 0.85349 0.74806 1.90682 1.16749 1.85537 1.51266 1.49243 1.09327 1.06474 1.73175 1.23861 0.80376 0.97113 1.03416 1.22757 0.87572 0.85247 1.00413 1.48317 1.47785 1.27601 1.10260 1.22535 1.00336 0.86039 0.93690 1.22682 1.04269 0.96465 0.92375 1.22392 1.00907 0.93783 1.01948 1.21883 0.80101 0.87304 0.81669 1.90697 1.61005 1.49247 1.44714 1.23503 0.99515 0.79245 1.01162 0.91842 0.88335 0.87087 0.88412 0.88326 0.82055 0.88717 0.88387 0.89386 0.86270 0.87825 0.86223 0.89487 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.24 13.22 21.65 0.29 -56.95 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.55 -32.52 9.50 67.95 0.65 -31.87 16 8 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.12 -5.25 5.98 71.24 0.43 -4.82 16 11 C 0.56 24.29 8.10 87.66 0.71 25.00 16 12 O -0.56 -29.24 16.64 -3.02 -0.05 -29.29 16 13 N -0.65 -20.95 3.69 -857.81 -3.16 -24.12 16 14 C 0.08 1.82 7.83 83.26 0.65 2.47 16 15 C 0.14 2.44 5.02 45.56 0.23 2.67 16 16 N -0.61 -7.90 3.18 -792.44 -2.52 -10.41 16 17 C 0.09 0.34 7.35 86.90 0.64 0.97 16 18 C -0.12 -0.17 7.19 31.72 0.23 0.06 16 19 C -0.15 -1.17 6.86 30.59 0.21 -0.96 16 20 C 0.50 8.94 7.49 87.90 0.66 9.60 16 21 O -0.58 -16.55 14.49 -3.03 -0.04 -16.60 16 22 C 0.09 2.27 8.17 83.18 0.68 2.95 16 23 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 25 H 0.11 4.41 8.14 -2.40 -0.02 4.39 16 26 H 0.10 2.80 5.40 -2.39 -0.01 2.78 16 27 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.03 7.40 -2.39 -0.02 2.01 16 Total: -1.00 -87.18 320.12 2.01 -85.18 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.08 Total: 7.95 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.54 Total: 7.32 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -5.39 Total: -91.48 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.09 Total: -45.89 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -87.18 2.01 -85.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888762538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.321 kcal (2) G-P(sol) polarization free energy of solvation -87.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds