Wall clock time and date at job start Tue Mar 31 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00166 * 2 1 4 4 C 1.50699 * 109.47106 * 180.02562 * 3 2 1 5 5 S 1.70449 * 124.59187 * 269.99964 * 4 3 2 6 6 C 1.75510 * 92.44403 * 180.02562 * 5 4 3 7 7 C 1.32774 * 110.57509 * 359.73803 * 6 5 4 8 8 C 1.36010 * 124.59097 * 90.00284 * 4 3 2 9 9 C 1.47191 * 123.46099 * 359.97438 * 8 4 3 10 10 O 1.21633 * 119.99989 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99772 * 179.97438 * 9 8 4 12 12 C 1.46499 * 119.99665 * 179.72411 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36936 * 119.99757 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00476 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48504 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 H 1.09009 * 109.46939 * 299.99923 * 1 2 3 24 24 H 1.09004 * 109.47660 * 59.99602 * 1 2 3 25 25 H 1.09002 * 109.47692 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47220 * 60.00256 * 3 2 1 27 27 H 1.09000 * 109.47013 * 300.00429 * 3 2 1 28 28 H 1.08003 * 124.71007 * 179.97438 * 6 5 4 29 29 H 1.07998 * 123.45645 * 180.23154 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 0.97000 * 120.00386 * 359.97438 * 14 13 12 36 36 H 0.96996 * 120.00458 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4777 1.1097 1.4021 6 6 5.9587 0.9933 0.4676 7 6 5.6923 1.0091 -0.8330 8 6 4.2817 1.1257 -1.1206 9 6 3.7327 1.1689 -2.4856 10 8 2.5321 1.2641 -2.6555 11 7 4.5605 1.1041 -3.5473 12 6 4.0136 1.1410 -4.9058 13 6 5.1565 1.0458 -5.9185 14 7 4.6096 1.0821 -7.2771 15 6 5.4502 1.0109 -8.3557 16 1 6.5163 0.9276 -8.2049 17 6 4.9318 1.0448 -9.6430 18 7 3.6324 1.1448 -9.8269 19 14 6.0785 0.9470 -11.1145 20 1 6.8374 -0.3286 -11.0667 21 1 5.2825 1.0034 -12.3669 22 1 7.0272 2.0889 -11.0795 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 6.9490 0.9154 0.8916 29 1 6.4525 0.9447 -1.5974 30 1 5.5180 1.0286 -3.4118 31 1 3.3327 0.3014 -5.0464 32 1 3.4732 2.0759 -5.0547 33 1 5.8373 1.8853 -5.7779 34 1 5.6969 0.1109 -5.7697 35 1 3.6520 1.1566 -7.4126 36 1 3.2702 1.1689 -10.7263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130255083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:21 Heat of formation + Delta-G solvation = -35.237677 kcal Electronic energy + Delta-G solvation = -19344.882638 eV Core-core repulsion = 16149.462612 eV Total energy + Delta-G solvation = -3195.420027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97735 -37.96535 -36.89003 -35.65240 -33.84377 -31.37538 -31.20282 -28.39525 -27.11179 -25.75843 -23.99788 -23.01872 -21.65128 -21.40735 -19.38141 -17.83151 -17.36714 -16.64320 -16.52001 -15.76430 -15.57917 -15.28202 -14.78406 -14.55215 -14.38390 -13.88554 -13.49864 -13.30639 -13.09979 -12.85147 -12.84635 -12.37526 -11.97643 -11.53087 -11.41739 -11.28325 -11.09517 -10.81547 -10.79212 -10.16745 -10.05819 -9.77056 -9.45599 -9.21263 -8.98662 -8.86195 -8.59580 -6.99050 -5.78958 -3.09732 0.49892 1.23606 1.64888 1.80301 3.34231 3.35874 3.43241 3.47860 3.49198 3.79582 4.46544 4.58530 4.69968 4.79837 5.02615 5.17830 5.22531 5.31953 5.46206 5.50810 5.55505 5.57640 5.69627 5.79261 5.80245 5.96085 6.00502 6.16985 6.50322 6.71454 6.76031 6.97375 7.63788 7.65971 8.33217 8.38838 9.49833 10.04664 10.39522 11.43602 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.003027 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.902482 B = 9248.338036 C =10176.452870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.123 3.877 4 C -0.153 4.153 5 S 0.191 5.809 6 C -0.229 4.229 7 C -0.109 4.109 8 C -0.143 4.143 9 C 0.575 3.425 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.112 3.888 13 C 0.145 3.855 14 N -0.729 5.729 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 0.424 26.123 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.045 3.955 4 C -0.274 4.274 5 S 0.458 5.542 6 C -0.364 4.364 7 C -0.138 4.138 8 C -0.161 4.161 9 C 0.360 3.640 10 O -0.412 6.412 11 N -0.366 5.366 12 C -0.012 4.012 13 C 0.016 3.984 14 N -0.374 5.374 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.188 0.812 29 H 0.170 0.830 30 H 0.233 0.767 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.220 0.780 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.088 0.340 27.410 27.412 hybrid contribution 1.002 0.082 -2.417 2.617 sum 1.090 0.422 24.994 25.021 Atomic orbital electron populations 1.22733 0.80541 1.02843 1.00117 1.87909 1.19931 1.26505 1.95484 1.20984 0.85836 0.86279 1.02411 1.24147 1.00076 1.05827 0.97303 1.82987 0.95135 1.68906 1.07160 1.25479 1.02500 1.11127 0.97293 1.21267 0.94527 1.01487 0.96562 1.20294 0.92895 1.08985 0.93922 1.17502 0.86164 0.76772 0.83564 1.90737 1.14596 1.49915 1.85957 1.45785 1.10309 1.74296 1.06245 1.21597 0.97559 1.02645 0.79360 1.20758 0.93526 0.98394 0.85694 1.42177 1.07163 1.89205 0.98894 1.19151 0.90126 1.43232 0.85099 0.91075 1.24777 0.95918 1.02603 0.97484 1.69653 1.10214 1.56851 1.21185 0.86223 0.79580 0.77881 0.82202 1.21176 1.21607 1.21191 0.94342 0.93385 0.89537 0.92819 0.88388 0.81169 0.83047 0.76691 0.91129 0.91153 0.95779 0.95779 0.77986 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.14 10.69 -35.23 -0.38 -5.52 16 3 C 0.12 1.52 5.65 36.01 0.20 1.72 16 4 C -0.15 -1.86 5.97 -35.11 -0.21 -2.07 16 5 S 0.19 1.67 22.97 -107.50 -2.47 -0.80 16 6 C -0.23 -1.85 11.12 28.86 0.32 -1.52 16 7 C -0.11 -1.05 9.91 -39.02 -0.39 -1.44 16 8 C -0.14 -1.84 5.98 -104.63 -0.63 -2.46 16 9 C 0.57 9.00 7.79 -12.62 -0.10 8.91 16 10 O -0.53 -9.99 14.06 5.25 0.07 -9.91 16 11 N -0.72 -10.39 5.53 -61.45 -0.34 -10.73 16 12 C 0.11 1.97 5.79 -4.04 -0.02 1.95 16 13 C 0.14 2.86 6.37 -4.04 -0.03 2.84 16 14 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 15 C -0.25 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 1.38 5.94 -51.93 -0.31 1.08 16 28 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.15 1.12 7.10 -52.49 -0.37 0.75 16 30 H 0.40 4.61 7.02 -40.82 -0.29 4.32 16 31 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -34.00 324.92 -7.46 -41.46 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.63 Total: 8.08 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 0.02 Total: 1.90 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.05 Total: -57.44 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.30 Total: -15.44 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.47 Total: -0.80 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.00 -7.46 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130255083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.218 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds