Wall clock time and date at job start Tue Mar 31 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00166 * 2 1 4 4 C 1.50699 * 109.47106 * 180.02562 * 3 2 1 5 5 S 1.70449 * 124.59187 * 269.99964 * 4 3 2 6 6 C 1.75510 * 92.44403 * 180.02562 * 5 4 3 7 7 C 1.32774 * 110.57509 * 359.73803 * 6 5 4 8 8 C 1.36010 * 124.59097 * 90.00284 * 4 3 2 9 9 C 1.47191 * 123.46099 * 359.97438 * 8 4 3 10 10 O 1.21633 * 119.99989 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99772 * 179.97438 * 9 8 4 12 12 C 1.46499 * 119.99665 * 179.72411 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36936 * 119.99757 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00476 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48504 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 H 1.09009 * 109.46939 * 299.99923 * 1 2 3 24 24 H 1.09004 * 109.47660 * 59.99602 * 1 2 3 25 25 H 1.09002 * 109.47692 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47220 * 60.00256 * 3 2 1 27 27 H 1.09000 * 109.47013 * 300.00429 * 3 2 1 28 28 H 1.08003 * 124.71007 * 179.97438 * 6 5 4 29 29 H 1.07998 * 123.45645 * 180.23154 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 0.97000 * 120.00386 * 359.97438 * 14 13 12 36 36 H 0.96996 * 120.00458 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4777 1.1097 1.4021 6 6 5.9587 0.9933 0.4676 7 6 5.6923 1.0091 -0.8330 8 6 4.2817 1.1257 -1.1206 9 6 3.7327 1.1689 -2.4856 10 8 2.5321 1.2641 -2.6555 11 7 4.5605 1.1041 -3.5473 12 6 4.0136 1.1410 -4.9058 13 6 5.1565 1.0458 -5.9185 14 7 4.6096 1.0821 -7.2771 15 6 5.4502 1.0109 -8.3557 16 1 6.5163 0.9276 -8.2049 17 6 4.9318 1.0448 -9.6430 18 7 3.6324 1.1448 -9.8269 19 14 6.0785 0.9470 -11.1145 20 1 6.8374 -0.3286 -11.0667 21 1 5.2825 1.0034 -12.3669 22 1 7.0272 2.0889 -11.0795 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 6.9490 0.9154 0.8916 29 1 6.4525 0.9447 -1.5974 30 1 5.5180 1.0286 -3.4118 31 1 3.3327 0.3014 -5.0464 32 1 3.4732 2.0759 -5.0547 33 1 5.8373 1.8853 -5.7779 34 1 5.6969 0.1109 -5.7697 35 1 3.6520 1.1566 -7.4126 36 1 3.2702 1.1689 -10.7263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130255083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:20 Heat of formation + Delta-G solvation = -60.747372 kcal Electronic energy + Delta-G solvation = -19345.988822 eV Core-core repulsion = 16149.462612 eV Total energy + Delta-G solvation = -3196.526210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11371 -38.95082 -37.80215 -37.25297 -35.53756 -33.17421 -32.14631 -29.93551 -28.13772 -26.82095 -25.57213 -24.27546 -22.99449 -22.61300 -20.47136 -19.32528 -18.65302 -17.69544 -17.49159 -17.08182 -16.64916 -16.49542 -16.44072 -15.75265 -15.42832 -15.25469 -15.09725 -14.82619 -14.40843 -13.98899 -13.76947 -13.20744 -13.07247 -13.04529 -12.78326 -12.63051 -12.53654 -12.38002 -12.12500 -12.01407 -11.86702 -11.13946 -10.98235 -10.51405 -10.24350 -9.93066 -9.38743 -9.07416 -7.96843 -5.28640 -0.35782 0.49737 0.92556 0.98605 1.48475 1.52439 1.58515 2.13252 2.24827 2.58559 2.93371 3.37203 3.67851 3.76308 3.92702 3.99410 4.14629 4.20135 4.31268 4.42363 4.48431 4.50031 4.55985 4.61968 4.79644 4.89864 5.03894 5.05956 5.11555 5.24549 5.35585 5.48449 6.09567 6.23530 6.49527 7.16206 7.29820 8.01233 8.24667 9.26733 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.003027 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.902482 B = 9248.338036 C =10176.452870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.121 3.879 4 C -0.182 4.182 5 S 0.246 5.754 6 C -0.217 4.217 7 C -0.121 4.121 8 C -0.166 4.166 9 C 0.569 3.431 10 O -0.574 6.574 11 N -0.704 5.704 12 C 0.130 3.870 13 C 0.150 3.850 14 N -0.747 5.747 15 C -0.251 4.251 16 H 0.084 0.916 17 C -0.076 4.076 18 N -0.971 5.971 19 Si 0.981 3.019 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.275 1.275 23 H 0.063 0.937 24 H 0.035 0.965 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.207 0.793 29 H 0.173 0.827 30 H 0.415 0.585 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.374 0.626 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 0.245 28.129 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C 0.043 3.957 4 C -0.303 4.303 5 S 0.513 5.487 6 C -0.352 4.352 7 C -0.149 4.149 8 C -0.185 4.185 9 C 0.356 3.644 10 O -0.456 6.456 11 N -0.356 5.356 12 C 0.005 3.995 13 C 0.023 3.977 14 N -0.391 5.391 15 C -0.382 4.382 16 H 0.102 0.898 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.201 1.201 21 H -0.223 1.223 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.224 0.776 29 H 0.190 0.810 30 H 0.253 0.747 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.205 0.795 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.682 0.157 29.474 29.596 hybrid contribution 0.212 0.136 -2.861 2.872 sum 2.894 0.294 26.613 26.771 Atomic orbital electron populations 1.22896 0.79213 1.03865 1.00710 1.87858 1.21587 1.27368 1.95610 1.20973 0.86529 0.85864 1.02291 1.24425 1.00424 1.06262 0.99150 1.82788 0.94279 1.66900 1.04701 1.25949 1.03801 1.08804 0.96637 1.21402 0.93170 1.02346 0.97985 1.20266 0.94800 1.11256 0.92172 1.18056 0.85726 0.75716 0.84855 1.90720 1.16411 1.51705 1.86718 1.45567 1.11169 1.74109 1.04760 1.21161 0.96497 1.01128 0.80700 1.20839 0.94082 0.99297 0.83492 1.42416 1.06544 1.89307 1.00794 1.19632 0.90984 1.41659 0.85950 0.89835 1.25686 0.97432 1.03206 1.00535 1.69830 1.12207 1.58765 1.21344 0.85116 0.77558 0.78384 0.78094 1.20079 1.22296 1.20035 0.91857 0.94647 0.88366 0.90294 0.91177 0.77617 0.80998 0.74719 0.92951 0.92634 0.94263 0.94464 0.79467 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.40 -11.09 10.69 -148.98 -1.59 -12.69 16 3 C 0.12 3.02 5.65 71.24 0.40 3.42 16 4 C -0.18 -4.27 5.97 25.17 0.15 -4.12 16 5 S 0.25 3.60 22.97 -56.49 -1.30 2.30 16 6 C -0.22 -2.67 11.12 66.64 0.74 -1.93 16 7 C -0.12 -2.02 9.91 22.67 0.22 -1.80 16 8 C -0.17 -4.15 5.98 -19.87 -0.12 -4.27 16 9 C 0.57 18.18 7.79 86.60 0.67 18.85 16 10 O -0.57 -22.68 14.06 -4.14 -0.06 -22.74 16 11 N -0.70 -20.30 5.53 -466.58 -2.58 -22.88 16 12 C 0.13 4.67 5.79 86.38 0.50 5.17 16 13 C 0.15 5.84 6.37 86.38 0.55 6.39 16 14 N -0.75 -38.62 5.60 -343.45 -1.92 -40.54 16 15 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 18 N -0.97 -60.41 13.06 21.65 0.28 -60.12 16 19 Si 0.98 45.90 29.55 68.60 2.03 47.92 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 2.12 5.94 -2.39 -0.01 2.10 16 28 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.17 2.00 7.10 -2.91 -0.02 1.98 16 30 H 0.42 8.98 7.02 -92.71 -0.65 8.33 16 31 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 36 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.90 324.92 0.29 -74.61 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.25 Total: 27.68 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.68 Total: 6.46 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -4.22 Total: -123.54 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.65 Total: -35.43 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.30 Total: 2.30 kcal Total: -74.90 0.29 -74.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130255083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.864 kcal (2) G-P(sol) polarization free energy of solvation -74.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds