Wall clock time and date at job start Tue Mar 31 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47272 * 2 1 4 4 C 1.46898 * 111.00244 * 198.60821 * 3 2 1 5 5 C 1.50700 * 109.47178 * 66.04524 * 4 3 2 6 6 H 1.08004 * 119.99941 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00077 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47107 * 59.99577 * 9 7 5 11 11 H 1.48501 * 109.47024 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46831 * 299.99856 * 9 7 5 13 13 C 1.37875 * 111.00174 * 74.65120 * 3 2 1 14 14 N 1.33001 * 120.63104 * 58.87213 * 13 3 2 15 15 C 1.31681 * 120.88525 * 180.02562 * 14 13 3 16 16 N 1.31932 * 122.25806 * 0.02562 * 15 14 13 17 17 C 1.32366 * 121.16875 * 359.68009 * 16 15 14 18 18 Cl 1.73596 * 120.52075 * 180.30668 * 17 16 15 19 19 C 1.39971 * 118.95771 * 0.57128 * 17 16 15 20 20 C 1.47361 * 121.00357 * 179.74588 * 19 17 16 21 21 N 1.34772 * 120.00218 * 89.27609 * 20 19 17 22 22 O 1.21608 * 119.99443 * 269.00064 * 20 19 17 23 23 H 1.08999 * 109.47413 * 294.23962 * 1 2 3 24 24 H 1.09005 * 109.46955 * 54.24081 * 1 2 3 25 25 H 1.08996 * 109.46910 * 174.23574 * 1 2 3 26 26 H 1.08999 * 109.47190 * 240.00267 * 2 1 3 27 27 H 1.08997 * 109.46952 * 119.99857 * 2 1 3 28 28 H 1.08999 * 109.47090 * 186.04841 * 4 3 2 29 29 H 1.09007 * 109.46848 * 306.04606 * 4 3 2 30 30 H 0.96999 * 119.99952 * 180.02562 * 8 7 5 31 31 H 1.07999 * 118.87344 * 180.02562 * 15 14 13 32 32 H 0.96997 * 120.00380 * 179.71973 * 21 20 19 33 33 H 0.97007 * 119.99714 * 359.72851 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4206 1.4481 -0.4376 5 6 3.5142 1.0347 -1.8838 6 1 2.6222 0.7537 -2.4239 7 6 4.7387 1.0153 -2.5174 8 7 5.8248 1.3581 -1.8597 9 14 4.8549 0.5023 -4.3098 10 1 4.0351 1.4196 -5.1414 11 1 6.2710 0.5662 -4.7521 12 1 4.3508 -0.8863 -4.4607 13 6 1.8632 1.9644 1.2413 14 7 2.4400 1.4323 2.3151 15 6 2.2934 1.9813 3.5030 16 7 1.5767 3.0729 3.6907 17 6 0.9703 3.6764 2.6807 18 17 0.0379 5.1165 2.9456 19 6 1.0882 3.1320 1.3965 20 6 0.4274 3.7637 0.2407 21 7 1.0705 4.7131 -0.4673 22 8 -0.6964 3.4247 -0.0772 23 1 -0.3634 0.4219 0.9370 24 1 -0.3633 0.6006 -0.8340 25 1 -0.3633 -1.0224 -0.1032 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7904 2.4674 -0.3263 29 1 4.0225 0.7745 0.1725 30 1 6.6862 1.3448 -2.3056 31 1 2.7765 1.5222 4.3528 32 1 0.6372 5.1260 -1.2305 33 1 1.9670 4.9835 -0.2136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:51 Heat of formation + Delta-G solvation = -8.089011 kcal Electronic energy + Delta-G solvation = -20615.474453 eV Core-core repulsion = 17315.647631 eV Total energy + Delta-G solvation = -3299.826822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.58825 -40.11109 -39.06737 -38.05521 -34.99654 -34.77269 -34.16574 -32.96830 -31.66974 -28.79162 -26.52836 -25.41101 -24.43876 -22.41469 -22.36757 -19.48196 -19.05771 -18.70005 -18.30955 -17.96988 -17.08193 -16.36464 -16.26656 -15.65700 -15.52514 -15.46251 -15.12144 -14.77755 -14.36465 -14.13212 -13.57098 -13.19986 -12.95913 -12.87206 -12.78345 -12.51714 -12.46914 -12.13783 -11.97876 -11.58699 -11.35809 -11.30132 -10.77859 -10.68996 -10.67245 -10.64826 -9.65085 -8.23771 -6.33917 -0.66300 -0.48057 0.21307 1.39591 1.44729 1.45890 1.54062 2.25020 2.33021 2.41352 2.51390 2.96189 3.10702 3.18611 3.56175 3.84769 3.95684 4.15673 4.34367 4.58898 4.70724 4.88871 4.94289 5.04932 5.12446 5.30439 5.44669 5.59999 5.82684 5.88496 5.93578 6.26555 6.39143 6.67614 6.77934 7.19328 7.35273 8.87043 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.005622 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.968695 B = 4978.998157 C = 5176.803376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 N -0.497 5.497 4 C 0.228 3.772 5 C -0.525 4.525 6 H 0.066 0.934 7 C 0.013 3.987 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.402 3.598 14 N -0.559 5.559 15 C 0.342 3.658 16 N -0.523 5.523 17 C 0.251 3.749 18 Cl 0.015 6.985 19 C -0.217 4.217 20 C 0.600 3.400 21 N -0.819 5.819 22 O -0.558 6.558 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.007 0.993 29 H -0.016 1.016 30 H 0.266 0.734 31 H 0.249 0.751 32 H 0.417 0.583 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 5.053 8.095 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 N -0.222 5.222 4 C 0.104 3.896 5 C -0.563 4.563 6 H 0.084 0.916 7 C -0.186 4.186 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.164 3.836 14 N -0.277 5.277 15 C 0.055 3.945 16 N -0.240 5.240 17 C 0.077 3.923 18 Cl 0.044 6.956 19 C -0.228 4.228 20 C 0.382 3.618 21 N -0.382 5.382 22 O -0.436 6.436 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.002 0.998 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.250 0.750 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.178 4.698 8.444 12.659 hybrid contribution 0.761 0.192 -1.064 1.322 sum -7.417 4.890 7.380 11.549 Atomic orbital electron populations 1.21671 0.93772 1.02447 1.00916 1.22140 0.96012 0.86181 1.02232 1.60068 1.24270 1.20771 1.17064 1.19359 0.79637 0.95247 0.95344 1.21256 0.93638 1.45628 0.95805 0.91578 1.25772 0.95047 0.95043 1.02732 1.70060 0.99138 1.48811 1.38691 0.85476 0.77014 0.79175 0.79222 1.19385 1.20968 1.19318 1.20486 0.85057 0.88179 0.89862 1.68821 1.22882 1.35063 1.00984 1.25817 0.88312 0.85818 0.94590 1.68013 1.11165 1.11561 1.33275 1.22139 0.91592 0.90466 0.88145 1.98441 1.68636 1.31698 1.96806 1.21258 1.05667 1.00349 0.95545 1.17217 0.84521 0.78551 0.81505 1.43480 1.20803 1.40475 1.33432 1.90797 1.19908 1.63211 1.69660 0.94775 0.92877 0.89736 0.89574 0.93712 0.97510 0.99789 0.92494 0.73492 0.74982 0.75985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.93 71.98 0.71 -3.69 16 2 C 0.06 2.35 5.49 86.30 0.47 2.82 16 3 N -0.50 -21.03 3.90 -704.85 -2.75 -23.78 16 4 C 0.23 11.39 4.54 85.56 0.39 11.78 16 5 C -0.53 -27.78 8.25 25.60 0.21 -27.57 16 6 H 0.07 3.45 7.30 -2.91 -0.02 3.43 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -52.54 13.29 21.45 0.28 -52.25 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.40 15.26 4.67 133.73 0.62 15.88 16 14 N -0.56 -19.50 9.58 -196.95 -1.89 -21.39 16 15 C 0.34 9.26 12.26 180.88 2.22 11.48 16 16 N -0.52 -14.73 10.41 -189.96 -1.98 -16.71 16 17 C 0.25 7.55 7.37 85.03 0.63 8.17 16 18 Cl 0.02 0.39 28.33 -2.72 -0.08 0.31 16 19 C -0.22 -7.45 5.68 -19.78 -0.11 -7.56 16 20 C 0.60 20.49 6.28 86.65 0.54 21.03 16 21 N -0.82 -22.03 8.87 -175.94 -1.56 -23.59 16 22 O -0.56 -22.05 17.94 -4.05 -0.07 -22.13 16 23 H 0.03 1.16 7.82 -2.39 -0.02 1.15 16 24 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.09 3.56 6.58 -2.39 -0.02 3.54 16 27 H 0.04 1.71 7.45 -2.39 -0.02 1.69 16 28 H 0.01 0.36 8.05 -2.39 -0.02 0.35 16 29 H -0.02 -0.87 8.12 -2.38 -0.02 -0.89 16 30 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.25 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.42 9.41 8.93 -92.71 -0.83 8.59 16 33 H 0.41 9.89 8.81 -92.70 -0.82 9.07 16 Total: -1.00 -65.44 308.83 -0.33 -65.77 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -0.47 Total: 16.25 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 6.15 Total: 33.53 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -7.89 Total: -137.73 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.07 Total: -22.13 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.31 kcal Total: -65.44 -0.33 -65.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.684 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds