Wall clock time and date at job start Tue Mar 31 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37364 * 125.83455 * 2 1 4 4 N 1.29398 * 108.83273 * 179.87027 * 3 2 1 5 5 N 1.40170 * 108.13850 * 0.38626 * 4 3 2 6 6 C 1.46501 * 126.35006 * 179.75494 * 5 4 3 7 7 C 1.50700 * 109.47068 * 269.99780 * 6 5 4 8 8 O 1.20824 * 119.99894 * 359.97438 * 7 6 5 9 9 O 1.34232 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99795 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.21294 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00347 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00137 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00130 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00110 * 180.02562 * 14 13 11 17 17 N 1.31415 * 119.99616 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00181 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46886 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47218 * 119.99636 * 18 16 14 21 21 H 1.48502 * 109.46812 * 239.99878 * 18 16 14 22 22 C 1.34818 * 125.83407 * 180.30146 * 2 1 3 23 23 O 1.21813 * 126.29915 * 359.93868 * 22 2 1 24 24 H 1.09002 * 109.47391 * 269.69141 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.69197 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.69324 * 1 2 3 27 27 H 1.08004 * 125.58419 * 0.03361 * 3 2 1 28 28 H 1.08994 * 109.47168 * 30.00064 * 6 5 4 29 29 H 1.09008 * 109.47151 * 149.99601 * 6 5 4 30 30 H 1.08999 * 109.47786 * 300.00290 * 10 9 7 31 31 H 1.09002 * 109.46976 * 59.99942 * 10 9 7 32 32 H 0.97001 * 119.99703 * 0.02562 * 13 11 10 33 33 H 0.97006 * 119.99736 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0028 5 7 3.5344 -0.6661 -0.0043 6 6 4.7314 -1.5109 -0.0091 7 6 5.1411 -1.7934 -1.4316 8 8 4.4989 -1.3365 -2.3473 9 8 6.2195 -2.5527 -1.6811 10 6 6.5548 -2.7836 -3.0748 11 6 7.7851 -3.6498 -3.1587 12 8 8.3259 -4.0351 -2.1436 13 7 8.2840 -3.9973 -4.3615 14 6 9.4029 -4.7858 -4.4378 15 1 9.8844 -5.1289 -3.5339 16 6 9.9176 -5.1436 -5.6779 17 7 9.3314 -4.7266 -6.7776 18 14 11.4418 -6.2186 -5.7817 19 1 11.9068 -6.5518 -4.4114 20 1 11.1163 -7.4697 -6.5123 21 1 12.5142 -5.4882 -6.5040 22 6 2.2543 -1.0930 -0.0058 23 8 1.8805 -2.2523 -0.0108 24 1 -0.3634 -0.0055 1.0276 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5091 27 1 1.9250 2.1374 0.0005 28 1 5.5416 -0.9959 0.5069 29 1 4.5153 -2.4501 0.5002 30 1 5.7231 -3.2842 -3.5706 31 1 6.7487 -1.8294 -3.5648 32 1 7.8513 -3.6895 -5.1733 33 1 9.6905 -4.9767 -7.6434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323612254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:31 Heat of formation + Delta-G solvation = -61.292507 kcal Electronic energy + Delta-G solvation = -21451.352952 eV Core-core repulsion = 17708.509889 eV Total energy + Delta-G solvation = -3742.843063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.69041 -40.30156 -38.15886 -37.48771 -36.33218 -35.44298 -33.99673 -32.26833 -31.37403 -29.28127 -28.14465 -27.03818 -24.62018 -23.18374 -21.89433 -20.84501 -19.58774 -18.13265 -17.98815 -17.88534 -16.83955 -16.69151 -16.37512 -15.96478 -15.73703 -15.44967 -14.86905 -14.53485 -14.21674 -13.99294 -13.77498 -13.14820 -12.98018 -12.85603 -12.72562 -12.19896 -12.08474 -12.01427 -11.61855 -11.14602 -10.91542 -10.53343 -10.44502 -10.38191 -10.31437 -10.20787 -9.61081 -8.88043 -8.51814 -8.07796 -6.49372 -3.91373 1.30647 1.66849 2.21135 2.33957 2.67689 2.96334 3.12558 3.24687 3.32413 3.73975 4.09716 4.11277 4.40759 4.56890 4.62921 4.82784 4.96575 5.04193 5.07761 5.11656 5.15754 5.49327 5.53028 5.69419 5.75136 6.04869 6.19942 6.55251 7.30263 7.48766 7.71398 7.80826 7.95648 8.48839 9.07715 9.39805 9.89491 10.67972 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.049740 B = 0.002759 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.795134 B =10145.054330 C =10235.562694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.562 5.562 3 C 0.259 3.741 4 N -0.273 5.273 5 N -0.442 5.442 6 C 0.174 3.826 7 C 0.442 3.558 8 O -0.502 6.502 9 O -0.322 6.322 10 C 0.062 3.938 11 C 0.439 3.561 12 O -0.575 6.575 13 N -0.553 5.553 14 C -0.301 4.301 15 H 0.107 0.893 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.934 3.066 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.653 3.347 23 O -0.547 6.547 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 13.645 11.995 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.291 5.291 3 C -0.041 4.041 4 N -0.093 5.093 5 N -0.263 5.263 6 C 0.051 3.949 7 C 0.282 3.718 8 O -0.390 6.390 9 O -0.235 6.235 10 C -0.015 4.015 11 C 0.224 3.776 12 O -0.459 6.459 13 N -0.190 5.190 14 C -0.430 4.430 15 H 0.125 0.875 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.352 3.648 23 O -0.420 6.420 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.249 0.751 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.228 0.772 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.790 12.866 12.179 23.731 hybrid contribution -0.395 -0.350 -1.036 1.163 sum -16.185 12.516 11.143 23.298 Atomic orbital electron populations 1.21838 0.73979 1.04899 1.03525 1.45866 1.08928 1.06578 1.67771 1.25957 0.85696 0.94795 0.97605 1.77028 1.18329 0.91184 1.22794 1.48285 1.05477 1.03389 1.69180 1.20725 0.85951 0.96362 0.91891 1.23969 0.78906 0.76077 0.92854 1.90677 1.52960 1.48801 1.46563 1.86518 1.43248 1.63234 1.30536 1.22779 0.98684 1.01181 0.78893 1.19285 0.86761 0.86399 0.85166 1.90563 1.62188 1.58523 1.34636 1.41712 1.26331 1.45196 1.05770 1.19784 1.03148 1.25755 0.94352 0.87516 1.25325 0.99621 0.98247 0.94638 1.69629 1.40860 1.45337 0.97968 0.85732 0.80416 0.79110 0.78694 1.19059 1.20619 1.20623 1.16665 0.81871 0.85154 0.81065 1.91113 1.77554 1.15221 1.58076 0.90769 0.89354 0.89227 0.75091 0.84038 0.84137 0.89496 0.89459 0.77159 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.05 59.85 0.66 1.13 16 2 N -0.56 -5.07 3.14 -130.10 -0.41 -5.48 16 3 C 0.26 1.83 12.66 -89.12 -1.13 0.70 16 4 N -0.27 -3.00 12.53 29.87 0.37 -2.63 16 5 N -0.44 -5.81 3.11 -66.31 -0.21 -6.01 16 6 C 0.17 2.15 6.98 -5.19 -0.04 2.11 16 7 C 0.44 7.33 8.03 36.01 0.29 7.62 16 8 O -0.50 -9.59 16.18 -18.75 -0.30 -9.89 16 9 O -0.32 -6.08 9.76 -45.91 -0.45 -6.53 16 10 C 0.06 1.22 5.94 36.00 0.21 1.44 16 11 C 0.44 10.77 7.86 -10.99 -0.09 10.68 16 12 O -0.58 -16.12 16.08 -14.11 -0.23 -16.34 16 13 N -0.55 -14.19 5.29 -10.96 -0.06 -14.25 16 14 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 15 H 0.11 3.10 7.16 -52.48 -0.38 2.73 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 17 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 18 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.65 9.02 8.60 -86.73 -0.75 8.27 16 23 O -0.55 -9.40 17.71 5.09 0.09 -9.31 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 27 H 0.23 0.25 8.06 -52.48 -0.42 -0.17 16 28 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.14 1.51 8.11 -51.92 -0.42 1.09 16 30 H 0.09 1.60 8.13 -51.93 -0.42 1.17 16 31 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 32 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -39.09 312.32 -5.06 -44.15 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.21 Total: 5.38 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: -1.07 Total: 23.96 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.43 Total: -51.98 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.89 Total: -42.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -39.09 -5.06 -44.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323612254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.138 kcal (2) G-P(sol) polarization free energy of solvation -39.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds