Wall clock time and date at job start Tue Mar 31 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37364 * 125.83455 * 2 1 4 4 N 1.29398 * 108.83273 * 179.87027 * 3 2 1 5 5 N 1.40170 * 108.13850 * 0.38626 * 4 3 2 6 6 C 1.46501 * 126.35006 * 179.75494 * 5 4 3 7 7 C 1.50700 * 109.47068 * 269.99780 * 6 5 4 8 8 O 1.20824 * 119.99894 * 359.97438 * 7 6 5 9 9 O 1.34232 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99795 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.21294 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00347 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00137 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00130 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00110 * 180.02562 * 14 13 11 17 17 N 1.31415 * 119.99616 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00181 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46886 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47218 * 119.99636 * 18 16 14 21 21 H 1.48502 * 109.46812 * 239.99878 * 18 16 14 22 22 C 1.34818 * 125.83407 * 180.30146 * 2 1 3 23 23 O 1.21813 * 126.29915 * 359.93868 * 22 2 1 24 24 H 1.09002 * 109.47391 * 269.69141 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.69197 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.69324 * 1 2 3 27 27 H 1.08004 * 125.58419 * 0.03361 * 3 2 1 28 28 H 1.08994 * 109.47168 * 30.00064 * 6 5 4 29 29 H 1.09008 * 109.47151 * 149.99601 * 6 5 4 30 30 H 1.08999 * 109.47786 * 300.00290 * 10 9 7 31 31 H 1.09002 * 109.46976 * 59.99942 * 10 9 7 32 32 H 0.97001 * 119.99703 * 0.02562 * 13 11 10 33 33 H 0.97006 * 119.99736 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0028 5 7 3.5344 -0.6661 -0.0043 6 6 4.7314 -1.5109 -0.0091 7 6 5.1411 -1.7934 -1.4316 8 8 4.4989 -1.3365 -2.3473 9 8 6.2195 -2.5527 -1.6811 10 6 6.5548 -2.7836 -3.0748 11 6 7.7851 -3.6498 -3.1587 12 8 8.3259 -4.0351 -2.1436 13 7 8.2840 -3.9973 -4.3615 14 6 9.4029 -4.7858 -4.4378 15 1 9.8844 -5.1289 -3.5339 16 6 9.9176 -5.1436 -5.6779 17 7 9.3314 -4.7266 -6.7776 18 14 11.4418 -6.2186 -5.7817 19 1 11.9068 -6.5518 -4.4114 20 1 11.1163 -7.4697 -6.5123 21 1 12.5142 -5.4882 -6.5040 22 6 2.2543 -1.0930 -0.0058 23 8 1.8805 -2.2523 -0.0108 24 1 -0.3634 -0.0055 1.0276 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5091 27 1 1.9250 2.1374 0.0005 28 1 5.5416 -0.9959 0.5069 29 1 4.5153 -2.4501 0.5002 30 1 5.7231 -3.2842 -3.5706 31 1 6.7487 -1.8294 -3.5648 32 1 7.8513 -3.6895 -5.1733 33 1 9.6905 -4.9767 -7.6434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323612254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:31 Heat of formation + Delta-G solvation = -89.309827 kcal Electronic energy + Delta-G solvation = -21452.567874 eV Core-core repulsion = 17708.509889 eV Total energy + Delta-G solvation = -3744.057985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.50076 -41.71721 -40.08412 -38.50771 -37.75587 -36.32061 -36.06171 -33.45714 -33.09134 -30.58858 -29.31292 -27.81741 -26.54101 -24.05241 -22.84182 -21.96174 -21.48664 -20.11356 -19.27129 -18.84278 -17.99662 -17.90704 -17.75604 -17.13107 -16.92593 -16.72979 -16.39286 -15.87187 -15.78673 -15.51315 -14.78700 -14.38681 -14.28682 -13.77575 -13.59691 -13.55935 -13.47612 -13.40555 -12.96308 -12.95418 -12.48618 -12.11940 -12.07471 -11.97629 -11.60767 -11.49759 -11.12210 -10.55443 -10.14456 -9.77278 -8.54511 -6.05405 0.43299 0.90732 0.98777 1.33348 1.33930 1.42890 1.56023 1.63698 1.83294 2.20282 2.29279 2.95648 3.10770 3.38260 3.51473 3.96463 4.02242 4.07325 4.09033 4.09940 4.16747 4.34339 4.53516 4.77018 4.80504 4.93148 5.14396 5.35436 5.62652 5.86314 6.38011 6.48762 6.53867 6.84197 7.00283 7.36365 7.89410 8.62868 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.049740 B = 0.002759 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.795134 B =10145.054330 C =10235.562694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.287 3.713 4 N -0.312 5.312 5 N -0.452 5.452 6 C 0.176 3.824 7 C 0.444 3.556 8 O -0.529 6.529 9 O -0.335 6.335 10 C 0.073 3.927 11 C 0.438 3.562 12 O -0.615 6.615 13 N -0.558 5.558 14 C -0.337 4.337 15 H 0.086 0.914 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 1.000 3.000 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.268 1.268 22 C 0.633 3.367 23 O -0.596 6.596 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.294 0.706 28 H 0.174 0.826 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.400 0.600 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 15.387 12.146 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.285 5.285 3 C -0.011 4.011 4 N -0.133 5.133 5 N -0.272 5.272 6 C 0.053 3.947 7 C 0.286 3.714 8 O -0.418 6.418 9 O -0.249 6.249 10 C -0.005 4.005 11 C 0.224 3.776 12 O -0.502 6.502 13 N -0.195 5.195 14 C -0.466 4.466 15 H 0.104 0.896 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.823 3.177 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.193 1.193 22 C 0.332 3.668 23 O -0.472 6.472 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.150 0.850 27 H 0.309 0.691 28 H 0.191 0.809 29 H 0.170 0.830 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.234 0.766 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.638 14.668 12.317 25.371 hybrid contribution -0.270 -0.780 -1.069 1.351 sum -16.908 13.888 11.248 24.602 Atomic orbital electron populations 1.22210 0.71505 1.06022 1.05124 1.46137 1.10298 1.05789 1.66304 1.27221 0.84227 0.96214 0.93423 1.77059 1.20633 0.89622 1.26009 1.48416 1.05220 1.04569 1.68970 1.20958 0.87080 0.97667 0.89025 1.24838 0.77534 0.74664 0.94360 1.90651 1.53546 1.49858 1.47789 1.86526 1.44559 1.64105 1.29750 1.22526 0.96645 1.01152 0.80151 1.20009 0.87512 0.85910 0.84155 1.90528 1.63765 1.60053 1.35817 1.41752 1.26145 1.45172 1.06427 1.19779 1.04715 1.27818 0.94311 0.89638 1.26168 1.02208 0.98868 0.93815 1.69687 1.41891 1.45565 0.98484 0.84770 0.76823 0.77627 0.78506 1.19462 1.19473 1.19341 1.17083 0.82720 0.85639 0.81351 1.91055 1.78453 1.17384 1.60338 0.88954 0.91398 0.84951 0.69121 0.80913 0.82966 0.88100 0.87475 0.76611 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.05 127.77 1.41 2.04 16 2 N -0.56 -8.85 3.14 -683.67 -2.15 -11.00 16 3 C 0.29 3.05 12.66 179.82 2.28 5.33 16 4 N -0.31 -6.23 12.53 -59.41 -0.74 -6.98 16 5 N -0.45 -11.50 3.11 -481.77 -1.50 -13.00 16 6 C 0.18 4.25 6.98 85.63 0.60 4.85 16 7 C 0.44 14.67 8.03 71.24 0.57 15.24 16 8 O -0.53 -20.14 16.18 21.97 0.36 -19.78 16 9 O -0.34 -12.70 9.76 -45.08 -0.44 -13.14 16 10 C 0.07 2.86 5.94 71.23 0.42 3.29 16 11 C 0.44 21.88 7.86 87.66 0.69 22.57 16 12 O -0.61 -35.43 16.08 15.72 0.25 -35.17 16 13 N -0.56 -29.20 5.29 -306.98 -1.62 -30.83 16 14 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 15 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 16 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 17 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 18 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 C 0.63 17.26 8.60 178.99 1.54 18.80 16 23 O -0.60 -21.05 17.71 -4.71 -0.08 -21.13 16 24 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 26 H 0.13 -0.22 8.14 -2.38 -0.02 -0.24 16 27 H 0.29 -1.07 8.06 -2.91 -0.02 -1.10 16 28 H 0.17 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.15 3.28 8.11 -2.38 -0.02 3.26 16 30 H 0.10 3.70 8.13 -2.39 -0.02 3.68 16 31 H 0.11 3.80 8.13 -2.39 -0.02 3.78 16 32 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 33 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -87.83 312.32 5.61 -82.22 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.44 Total: 19.63 kcal Atomic # 6 Polarization: 44.90 SS G_CDS: 8.79 Total: 53.69 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -5.73 Total: -110.80 kcal Atomic # 8 Polarization: -89.31 SS G_CDS: 0.09 Total: -89.23 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -87.83 5.61 -82.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323612254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -87.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds