Wall clock time and date at job start Tue Mar 31 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00164 * 2 1 4 4 H 1.48499 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47024 * 299.99790 * 3 2 1 6 6 H 1.48502 * 109.47215 * 60.00113 * 3 2 1 7 7 C 1.37882 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99643 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.91830 * 56.09662 * 9 7 2 11 11 C 1.55154 * 111.00498 * 292.19109 * 9 7 2 12 12 C 1.54322 * 102.94204 * 206.42365 * 11 9 7 13 13 N 1.47019 * 107.27223 * 22.19795 * 12 11 9 14 14 C 1.34777 * 125.65061 * 181.07843 * 13 12 11 15 15 O 1.21278 * 119.99931 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99833 * 359.97311 * 14 13 12 17 17 N 1.46506 * 109.47249 * 180.02562 * 16 14 13 18 18 C 1.47088 * 125.55883 * 269.71830 * 17 16 14 19 19 C 1.54095 * 103.77604 * 179.86725 * 18 17 16 20 20 O 1.45698 * 104.00535 * 0.37913 * 19 18 17 21 21 C 1.33765 * 109.48002 * 359.74689 * 20 19 18 22 22 O 1.21507 * 123.07503 * 179.97438 * 21 20 19 23 23 C 1.47426 * 108.70209 * 1.05519 * 13 12 11 24 24 H 0.97005 * 119.99523 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99996 * 303.90298 * 10 9 7 26 26 H 1.08999 * 110.71557 * 88.06460 * 11 9 7 27 27 H 1.08995 * 110.87338 * 324.86279 * 11 9 7 28 28 H 1.09001 * 109.88768 * 262.77536 * 12 11 9 29 29 H 1.09004 * 110.00812 * 141.67871 * 12 11 9 30 30 H 1.08997 * 109.47372 * 299.99870 * 16 14 13 31 31 H 1.08996 * 109.47442 * 59.99958 * 16 14 13 32 32 H 1.08997 * 110.56678 * 298.57108 * 18 17 16 33 33 H 1.09006 * 110.56342 * 61.42799 * 18 17 16 34 34 H 1.09001 * 110.73245 * 241.64202 * 19 18 17 35 35 H 1.09000 * 110.42614 * 118.96471 * 19 18 17 36 36 H 1.08998 * 110.36718 * 94.71247 * 23 13 12 37 37 H 1.09005 * 110.36600 * 217.03808 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.3514 -2.5689 -1.1077 11 6 0.4985 -2.7069 1.3414 12 6 0.3968 -4.2432 1.4463 13 7 1.4584 -4.8096 0.6015 14 6 1.6912 -6.1229 0.4076 15 8 2.5988 -6.4776 -0.3144 16 6 0.8238 -7.1504 1.0878 17 7 1.2777 -8.4937 0.7193 18 6 0.7954 -9.2741 -0.4304 19 6 1.5982 -10.5867 -0.3457 20 8 2.4330 -10.4138 0.8358 21 6 2.1957 -9.2142 1.3780 22 8 2.7605 -8.8145 2.3769 23 6 2.2256 -3.7031 0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.2780 -1.8361 -1.1500 26 1 -0.4933 -2.2566 1.3008 27 1 1.0711 -2.3005 2.1751 28 1 -0.5780 -4.5755 1.0893 29 1 0.5393 -4.5567 2.4805 30 1 0.8943 -7.0273 2.1685 31 1 -0.2114 -7.0173 0.7737 32 1 -0.2730 -9.4699 -0.3392 33 1 1.0122 -8.7546 -1.3638 34 1 2.2159 -10.7193 -1.2340 35 1 0.9267 -11.4358 -0.2182 36 1 3.1046 -3.4793 0.6055 37 1 2.5190 -3.9542 -1.0183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329807505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:38 Heat of formation + Delta-G solvation = -140.506989 kcal Electronic energy + Delta-G solvation = -22992.445957 eV Core-core repulsion = 19349.708240 eV Total energy + Delta-G solvation = -3642.737717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62498 -39.48978 -37.43632 -37.11343 -35.33225 -34.38297 -32.19678 -30.78692 -29.83925 -28.63294 -27.61093 -25.02901 -23.82585 -22.57195 -21.39247 -19.81526 -19.01082 -17.70575 -17.31905 -17.23604 -16.92029 -16.54124 -15.49673 -15.09541 -15.02538 -14.67700 -14.27381 -14.20438 -13.91491 -13.71284 -13.27375 -13.01407 -12.67060 -12.37996 -12.20322 -11.96752 -11.67998 -11.41027 -11.37311 -10.94871 -10.81960 -10.68040 -10.64794 -10.50396 -10.10855 -9.91569 -9.49504 -8.90518 -8.72576 -8.28272 -8.07880 -6.35705 -4.43071 2.20858 2.71394 2.92091 3.15584 3.24877 3.28262 3.30942 3.56554 3.97360 4.22390 4.44429 4.51449 4.77369 4.94061 4.98462 5.03836 5.17771 5.31972 5.46202 5.55509 5.68351 5.78125 5.93761 6.07681 6.23816 6.36701 6.58661 6.81196 6.88745 7.23524 7.23928 7.26108 7.68301 7.92541 7.93922 8.03913 8.49970 8.60062 9.26018 9.40596 10.72115 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.042395 B = 0.003645 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.304436 B = 7680.455816 C = 7761.291764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.139 4.139 12 C 0.096 3.904 13 N -0.604 5.604 14 C 0.504 3.496 15 O -0.546 6.546 16 C 0.134 3.866 17 N -0.614 5.614 18 C 0.067 3.933 19 C 0.044 3.956 20 O -0.328 6.328 21 C 0.650 3.350 22 O -0.520 6.520 23 C 0.120 3.880 24 H 0.269 0.731 25 H 0.386 0.614 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 -14.651 0.316 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.027 4.027 13 N -0.337 5.337 14 C 0.290 3.710 15 O -0.424 6.424 16 C 0.009 3.991 17 N -0.361 5.361 18 C -0.057 4.057 19 C -0.031 4.031 20 O -0.239 6.239 21 C 0.404 3.596 22 O -0.405 6.405 23 C -0.001 4.001 24 H 0.079 0.921 25 H 0.238 0.762 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.076 -15.321 0.408 15.859 hybrid contribution -0.132 1.585 0.001 1.591 sum -4.208 -13.735 0.409 14.371 Atomic orbital electron populations 1.69563 1.06008 1.27705 1.50538 1.24988 0.95029 0.99613 0.93354 0.86335 0.80192 0.82567 0.77751 1.19536 1.20733 1.20766 1.21527 0.93889 0.90162 1.51778 0.91540 1.19581 0.86030 0.90821 0.82748 1.86088 1.51027 1.52769 1.49635 1.23201 1.03177 0.89895 1.01490 1.22239 0.89904 0.97541 0.93030 1.48609 1.33134 1.04755 1.47214 1.20557 0.85587 0.82415 0.82474 1.90673 1.32509 1.79948 1.39273 1.21097 0.98213 0.77920 1.01823 1.47450 1.42861 1.16513 1.29233 1.22837 0.99892 0.91461 0.91486 1.24263 0.93301 0.98028 0.87502 1.87267 1.60848 1.33871 1.41868 1.18357 0.79078 0.79276 0.82899 1.91043 1.53601 1.71023 1.24789 1.22410 0.94551 0.85116 0.98041 0.92096 0.76196 0.89763 0.91216 0.92186 0.92517 0.86624 0.86787 0.88845 0.88624 0.87582 0.87657 0.90998 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.45 10.79 55.43 0.60 -21.86 16 2 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.64 8.25 -34.44 -0.28 -13.92 16 8 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 9 C 0.25 5.82 0.89 -89.62 -0.08 5.74 16 10 O -0.58 -14.43 13.18 -35.23 -0.46 -14.90 16 11 C -0.14 -2.83 5.64 -24.90 -0.14 -2.97 16 12 C 0.10 1.60 6.49 -3.07 -0.02 1.58 16 13 N -0.60 -11.54 3.33 -170.52 -0.57 -12.10 16 14 C 0.50 9.25 7.92 -10.99 -0.09 9.16 16 15 O -0.55 -11.98 16.69 5.56 0.09 -11.88 16 16 C 0.13 1.79 5.69 -5.19 -0.03 1.76 16 17 N -0.61 -8.15 2.45 -180.23 -0.44 -8.59 16 18 C 0.07 0.56 7.70 -3.15 -0.02 0.54 16 19 C 0.04 0.33 8.23 37.73 0.31 0.64 16 20 O -0.33 -4.41 11.09 -37.82 -0.42 -4.83 16 21 C 0.65 10.49 8.85 53.71 0.48 10.96 16 22 O -0.52 -10.48 17.54 -19.11 -0.34 -10.82 16 23 C 0.12 2.65 6.08 -2.53 -0.02 2.64 16 24 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 25 H 0.39 9.62 6.93 45.56 0.32 9.94 16 26 H 0.08 1.78 7.84 -51.93 -0.41 1.38 16 27 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.12 1.47 7.92 -51.93 -0.41 1.06 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.57 8.01 -51.93 -0.42 1.15 16 37 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -33.19 316.79 -6.03 -39.22 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.26 Total: 8.34 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 0.01 Total: 17.84 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.41 Total: -42.55 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.13 Total: -42.43 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.19 -6.03 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329807505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.285 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds