Wall clock time and date at job start Tue Mar 31 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48498 * 109.46948 * 264.98547 * 3 2 1 5 5 H 1.48499 * 109.47212 * 24.98863 * 3 2 1 6 6 H 1.48504 * 109.46922 * 144.98818 * 3 2 1 7 7 C 1.38955 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99821 * 206.12862 * 7 2 1 9 9 N 1.37098 * 120.00211 * 26.12278 * 7 2 1 10 10 C 1.46504 * 119.99856 * 8.08193 * 9 7 2 11 11 C 1.53002 * 109.47042 * 263.24549 * 10 9 7 12 12 C 1.50698 * 109.46841 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00177 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00037 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00103 * 188.08563 * 9 7 2 16 16 O 1.21291 * 120.00151 * 180.02562 * 15 9 7 17 17 C 1.50701 * 119.99801 * 359.97438 * 15 9 7 18 18 C 1.53007 * 109.47039 * 180.02562 * 17 15 9 19 19 H 1.08995 * 110.43530 * 56.08845 * 18 17 15 20 20 C 1.54855 * 110.60181 * 178.68978 * 18 17 15 21 21 C 1.54481 * 101.65969 * 93.93705 * 20 18 17 22 22 N 1.46757 * 105.55088 * 25.43484 * 21 20 18 23 23 C 1.34419 * 111.30167 * 342.93632 * 22 21 20 24 24 O 1.21277 * 124.94466 * 180.42868 * 23 22 21 25 25 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46820 * 23.24893 * 10 9 7 27 27 H 1.08999 * 109.46568 * 143.25070 * 10 9 7 28 28 H 1.08992 * 109.47273 * 300.00004 * 11 10 9 29 29 H 1.08999 * 109.47013 * 60.00793 * 11 10 9 30 30 H 0.96705 * 117.00074 * 179.97438 * 14 12 11 31 31 H 1.09004 * 109.47074 * 60.00377 * 17 15 9 32 32 H 1.08995 * 109.47521 * 300.00375 * 17 15 9 33 33 H 1.08999 * 111.04430 * 335.84294 * 20 18 17 34 34 H 1.08999 * 110.99480 * 212.00813 * 20 18 17 35 35 H 1.09004 * 110.24367 * 266.38256 * 21 20 18 36 36 H 1.09004 * 110.24443 * 144.47765 * 21 20 18 37 37 H 0.96998 * 124.34943 * 162.96522 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.6015 1.9852 -1.3947 5 1 1.3966 2.6809 0.5914 6 1 3.4887 1.4730 0.8033 7 6 2.0089 -1.2034 -0.0005 8 1 3.0061 -1.2513 0.4114 9 7 1.4284 -2.3298 -0.5238 10 6 0.1540 -2.2321 -1.2398 11 6 -0.9937 -2.5725 -0.2869 12 6 -2.3045 -2.4725 -1.0236 13 8 -2.3193 -2.1614 -2.1910 14 8 -3.4557 -2.7290 -0.3829 15 6 2.0302 -3.5271 -0.3795 16 8 1.5169 -4.5236 -0.8428 17 6 3.3413 -3.6276 0.3566 18 6 3.8045 -5.0857 0.3767 19 1 3.8725 -5.4774 -0.6381 20 6 5.1680 -5.2144 1.0995 21 6 4.7267 -5.5519 2.5409 22 7 3.4063 -6.1792 2.4114 23 6 2.8627 -5.9289 1.2078 24 8 1.7753 -6.3217 0.8414 25 1 -0.4850 0.8400 -0.0004 26 1 0.0254 -1.2170 -1.6156 27 1 0.1522 -2.9320 -2.0754 28 1 -0.8650 -3.5874 0.0889 29 1 -0.9919 -1.8726 0.5487 30 1 -4.2711 -2.6515 -0.8970 31 1 3.2121 -3.2729 1.3792 32 1 4.0892 -3.0161 -0.1482 33 1 5.7170 -4.2732 1.0699 34 1 5.7610 -6.0237 0.6734 35 1 4.6553 -4.6418 3.1364 36 1 5.4312 -6.2468 2.9981 37 1 2.9803 -6.7063 3.1054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:05 Heat of formation + Delta-G solvation = -177.634267 kcal Electronic energy + Delta-G solvation = -23329.385836 eV Core-core repulsion = 19685.038159 eV Total energy + Delta-G solvation = -3644.347677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51478 -41.18601 -39.97792 -37.28235 -37.19533 -36.77501 -33.73357 -33.46387 -32.32985 -29.65867 -27.16167 -26.92188 -25.03315 -22.53058 -22.11746 -21.14483 -20.62959 -19.26769 -18.66311 -18.21681 -17.78216 -17.28706 -16.83523 -16.69640 -16.46050 -16.05943 -15.60504 -15.34783 -14.71716 -14.63470 -14.32019 -14.22358 -13.96147 -13.53329 -13.38773 -13.17044 -13.12331 -12.84111 -12.66924 -12.53382 -12.27650 -12.08396 -11.97165 -11.83616 -11.67401 -11.58264 -10.86979 -10.61347 -10.14396 -9.89687 -9.76786 -8.29580 -5.76986 1.25685 1.47554 1.56012 1.64383 1.77655 2.01219 2.26634 2.37264 2.61433 3.03246 3.17923 3.61241 3.75985 4.01640 4.15309 4.24504 4.35057 4.42800 4.59705 4.64867 4.67067 4.83314 4.86808 4.90957 5.08948 5.19525 5.24746 5.28675 5.32948 5.54912 5.63423 5.84050 6.11122 6.19096 6.49313 7.03761 7.19913 7.50646 7.67003 8.11165 8.73966 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.006663 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.480047 B = 4201.178272 C = 5774.569604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C -0.004 4.004 3 Si 0.985 3.015 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.250 1.250 7 C -0.355 4.355 8 H 0.124 0.876 9 N -0.460 5.460 10 C 0.163 3.837 11 C -0.098 4.098 12 C 0.500 3.500 13 O -0.553 6.553 14 O -0.512 6.512 15 C 0.430 3.570 16 O -0.612 6.612 17 C -0.092 4.092 18 C -0.108 4.108 19 H 0.086 0.914 20 C -0.117 4.117 21 C 0.099 3.901 22 N -0.733 5.733 23 C 0.504 3.496 24 O -0.565 6.565 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.423 0.577 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -3.482 7.241 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.206 4.206 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.173 1.173 7 C -0.481 4.481 8 H 0.141 0.859 9 N -0.180 5.180 10 C 0.038 3.962 11 C -0.137 4.137 12 C 0.345 3.655 13 O -0.444 6.444 14 O -0.325 6.325 15 C 0.220 3.780 16 O -0.498 6.498 17 C -0.132 4.132 18 C -0.130 4.130 19 H 0.104 0.896 20 C -0.154 4.154 21 C -0.025 4.025 22 N -0.389 5.389 23 C 0.290 3.710 24 O -0.442 6.442 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.284 0.716 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.506 -3.912 6.668 12.253 hybrid contribution -1.205 0.630 -0.282 1.388 sum 8.301 -3.282 6.386 10.976 Atomic orbital electron populations 1.70096 1.07559 1.28298 1.46565 1.25997 0.95849 1.02611 0.96160 0.85061 0.78769 0.77022 0.78225 1.20963 1.21751 1.17326 1.20112 1.01242 0.85901 1.40843 0.85855 1.44040 1.18892 1.06940 1.48080 1.20687 0.82730 1.01063 0.91693 1.21528 0.87994 1.02635 1.01543 1.23490 0.86341 0.70611 0.85080 1.90610 1.88379 1.46184 1.19211 1.84531 1.17731 1.82124 1.48142 1.21154 0.89813 0.82274 0.84727 1.90669 1.68811 1.36283 1.54049 1.21270 0.94765 0.95501 1.01698 1.21766 0.96277 0.94581 1.00400 0.89575 1.22805 0.93600 1.05536 0.93507 1.22341 0.82796 0.99335 0.97981 1.46328 1.21822 1.54703 1.16075 1.21341 0.86212 0.79646 0.83754 1.90755 1.23153 1.54575 1.75689 0.92095 0.89277 0.95814 0.91363 0.85750 0.71581 0.88987 0.86455 0.86364 0.88192 0.89904 0.87101 0.75081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.40 8.73 21.66 0.19 -44.21 16 2 C 0.00 -0.19 4.88 84.93 0.41 0.22 16 3 Si 0.98 37.33 29.63 68.60 2.03 39.37 16 4 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 7 C -0.35 -16.73 9.25 84.04 0.78 -15.95 16 8 H 0.12 5.12 6.47 -2.91 -0.02 5.10 16 9 N -0.46 -23.18 2.64 -635.52 -1.68 -24.86 16 10 C 0.16 8.55 3.81 86.38 0.33 8.88 16 11 C -0.10 -4.81 5.61 29.85 0.17 -4.64 16 12 C 0.50 22.20 8.33 71.24 0.59 22.79 16 13 O -0.55 -26.83 16.74 21.97 0.37 -26.46 16 14 O -0.51 -17.82 13.42 -51.38 -0.69 -18.51 16 15 C 0.43 20.81 7.36 87.66 0.64 21.46 16 16 O -0.61 -34.28 13.37 18.22 0.24 -34.04 16 17 C -0.09 -3.20 3.52 29.85 0.11 -3.10 16 18 C -0.11 -3.30 2.57 -10.72 -0.03 -3.32 16 19 H 0.09 2.95 8.02 -2.39 -0.02 2.94 16 20 C -0.12 -1.92 6.73 31.73 0.21 -1.70 16 21 C 0.10 1.46 7.77 86.83 0.68 2.14 16 22 N -0.73 -18.01 6.24 -459.81 -2.87 -20.88 16 23 C 0.50 18.48 7.39 87.90 0.65 19.13 16 24 O -0.56 -28.07 15.85 18.27 0.29 -27.78 16 25 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 26 H 0.09 4.93 5.77 -2.39 -0.01 4.91 16 27 H 0.02 1.32 7.59 -2.39 -0.02 1.30 16 28 H 0.07 3.51 8.14 -2.39 -0.02 3.49 16 29 H 0.12 6.32 6.42 -2.39 -0.02 6.31 16 30 H 0.42 9.84 9.10 -74.05 -0.67 9.16 16 31 H 0.09 3.03 8.01 -2.38 -0.02 3.01 16 32 H 0.12 3.43 7.79 -2.39 -0.02 3.41 16 33 H 0.12 1.37 7.91 -2.39 -0.02 1.35 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.41 8.83 8.96 -92.71 -0.83 8.00 16 Total: -1.00 -77.79 312.08 2.05 -75.74 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.37 Total: 35.73 kcal Atomic # 6 Polarization: 41.36 SS G_CDS: 4.54 Total: 45.90 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -4.36 Total: -89.95 kcal Atomic # 8 Polarization: -107.00 SS G_CDS: 0.21 Total: -106.79 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.37 kcal Total: -77.79 2.05 -75.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.897 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds