Wall clock time and date at job start Tue Mar 31 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48495 * 109.47373 * 240.00544 * 3 2 1 5 5 H 1.48509 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46912 * 120.00227 * 3 2 1 7 7 C 1.38941 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00324 * 157.20960 * 7 2 1 9 9 N 1.37101 * 120.00298 * 337.21054 * 7 2 1 10 10 C 1.46506 * 119.99736 * 325.34246 * 9 7 2 11 11 C 1.53000 * 109.47367 * 270.00271 * 10 9 7 12 12 C 1.50694 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00071 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00134 * 179.97438 * 12 11 10 15 15 C 1.34775 * 120.00463 * 145.34525 * 9 7 2 16 16 O 1.21289 * 119.99858 * 184.88244 * 15 9 7 17 17 C 1.50699 * 119.99809 * 4.88321 * 15 9 7 18 18 N 1.46498 * 109.46745 * 179.71144 * 17 15 9 19 19 C 1.34780 * 120.00006 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99472 * 359.97438 * 19 18 17 21 21 C 1.50694 * 120.00266 * 179.97438 * 19 18 17 22 22 C 1.53005 * 117.49926 * 248.61701 * 21 19 18 23 23 C 1.52997 * 60.00088 * 252.50911 * 22 21 19 24 24 H 0.96999 * 119.99906 * 4.99351 * 1 2 3 25 25 H 1.09004 * 109.46992 * 29.99597 * 10 9 7 26 26 H 1.08997 * 109.47277 * 149.99894 * 10 9 7 27 27 H 1.09002 * 109.47144 * 300.00308 * 11 10 9 28 28 H 1.09004 * 109.46980 * 59.99326 * 11 10 9 29 29 H 0.96705 * 117.00306 * 179.97438 * 14 12 11 30 30 H 1.08999 * 109.47462 * 59.70958 * 17 15 9 31 31 H 1.09004 * 109.47108 * 299.70442 * 17 15 9 32 32 H 0.97001 * 120.00322 * 359.97438 * 18 17 15 33 33 H 1.09003 * 115.55413 * 34.32604 * 21 19 18 34 34 H 1.09002 * 117.49611 * 0.02562 * 22 21 19 35 35 H 1.08999 * 117.50183 * 145.01894 * 22 21 19 36 36 H 1.08997 * 117.49876 * 252.50544 * 23 22 21 37 37 H 1.09008 * 117.51729 * 107.48100 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0257 -1.2396 -0.3629 9 7 1.4037 -2.3445 0.4588 10 6 0.4538 -2.2727 1.5719 11 6 1.2039 -2.4444 2.8944 12 6 0.2269 -2.3699 4.0393 13 8 -0.9486 -2.1968 3.8201 14 8 0.6626 -2.4959 5.3026 15 6 1.6826 -3.5324 -0.1134 16 8 1.0826 -4.5280 0.2327 17 6 2.7400 -3.6235 -1.1833 18 7 2.8580 -5.0118 -1.6362 19 6 3.7480 -5.3344 -2.5955 20 8 4.4509 -4.4752 -3.0841 21 6 3.8698 -6.7624 -3.0610 22 6 5.1576 -7.5116 -2.7126 23 6 4.8984 -7.0644 -4.1526 24 1 -0.4850 0.8369 -0.0731 25 1 -0.0462 -1.3042 1.5610 26 1 -0.2872 -3.0654 1.4689 27 1 1.7040 -3.4128 2.9054 28 1 1.9449 -1.6516 2.9973 29 1 -0.0014 -2.4408 6.0036 30 1 3.6959 -3.2908 -0.7788 31 1 2.4610 -2.9894 -2.0249 32 1 2.2961 -5.6990 -1.2451 33 1 2.9418 -7.3342 -3.0719 34 1 5.9165 -6.9716 -2.1464 35 1 5.0770 -8.5764 -2.4941 36 1 4.6473 -7.8350 -4.8815 37 1 5.4868 -6.2300 -4.5345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:24 Heat of formation + Delta-G solvation = -137.233272 kcal Electronic energy + Delta-G solvation = -22282.074742 eV Core-core repulsion = 18639.478984 eV Total energy + Delta-G solvation = -3642.595758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.93342 -39.70875 -38.61292 -36.14660 -35.85229 -35.20407 -33.83979 -32.05574 -30.88069 -27.75744 -25.33497 -24.33827 -22.94510 -22.45250 -20.57646 -19.87269 -19.30882 -17.90787 -17.65265 -16.78808 -16.08012 -15.98756 -15.56963 -15.46188 -15.05486 -14.82070 -14.44735 -14.29673 -13.73583 -13.44293 -12.85121 -12.79571 -12.51174 -12.34414 -12.07082 -11.62521 -11.57139 -11.31541 -11.20967 -11.10833 -10.80501 -10.65326 -10.51080 -10.49983 -10.22234 -10.14886 -9.62218 -9.35289 -8.73941 -8.67804 -7.75944 -6.53111 -4.23280 2.60827 2.73429 3.05196 3.15747 3.16391 3.28345 3.43901 3.66142 3.89819 4.02183 4.65319 4.74944 4.80832 4.87248 4.89527 5.24390 5.51641 5.52143 5.68505 5.71772 5.82709 5.90850 6.03995 6.07909 6.09961 6.24584 6.28763 6.68889 6.77662 6.81449 7.19851 7.37316 7.67484 7.91259 8.16883 8.24882 8.54745 8.87548 9.23382 9.65921 10.48122 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.004724 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.263454 B = 5925.712343 C = 7349.613990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.050 3.950 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.427 5.427 10 C 0.121 3.879 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.524 6.524 15 C 0.461 3.539 16 O -0.604 6.604 17 C 0.118 3.882 18 N -0.708 5.708 19 C 0.539 3.461 20 O -0.549 6.549 21 C -0.191 4.191 22 C -0.154 4.154 23 C -0.150 4.150 24 H 0.275 0.725 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.402 0.598 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.409 0.591 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 -7.886 1.394 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.159 4.159 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.003 4.003 11 C -0.163 4.163 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.250 3.750 16 O -0.491 6.491 17 C -0.008 4.008 18 N -0.361 5.361 19 C 0.324 3.676 20 O -0.428 6.428 21 C -0.212 4.212 22 C -0.192 4.192 23 C -0.187 4.187 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.259 0.741 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.246 0.754 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.761 -7.526 0.922 9.523 hybrid contribution -0.440 0.709 0.717 1.100 sum 5.322 -6.817 1.640 8.803 Atomic orbital electron populations 1.69838 1.06397 1.28663 1.43450 1.25398 0.95087 1.00123 0.95244 0.86155 0.79414 0.80735 0.79459 1.19385 1.20770 1.19546 1.19473 0.98234 0.85120 1.45960 0.88510 1.43318 1.38761 1.05530 1.26831 1.21281 0.91062 1.06344 0.81601 1.21828 0.98087 1.05078 0.91318 1.23727 0.89104 0.71438 0.83189 1.90709 1.19340 1.44915 1.85120 1.84586 1.46169 1.85243 1.17602 1.20279 0.86165 0.84573 0.83963 1.90520 1.55006 1.36825 1.66775 1.20906 0.99201 0.82474 0.98219 1.45761 1.39987 1.11026 1.39346 1.19563 0.79747 0.89142 0.79109 1.90681 1.44733 1.50403 1.56976 1.22186 0.96551 0.95144 1.07311 1.22916 0.96992 1.00180 0.99097 1.22929 1.00844 1.03386 0.91530 0.91398 0.86132 0.91280 0.88582 0.87586 0.74052 0.89614 0.88664 0.75392 0.85892 0.88287 0.87958 0.88135 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.71 11.34 55.50 0.63 -21.08 16 2 C 0.05 1.19 4.95 -17.47 -0.09 1.11 16 3 Si 0.92 18.66 29.61 -169.99 -5.03 13.63 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.36 -8.56 8.69 -14.93 -0.13 -8.69 16 8 H 0.10 2.19 7.01 -52.48 -0.37 1.82 16 9 N -0.43 -10.03 2.54 -114.81 -0.29 -10.32 16 10 C 0.12 2.78 4.34 -4.04 -0.02 2.76 16 11 C -0.12 -2.34 6.13 -27.89 -0.17 -2.51 16 12 C 0.48 8.57 8.33 36.00 0.30 8.87 16 13 O -0.51 -10.67 16.74 -18.75 -0.31 -10.98 16 14 O -0.52 -7.21 13.42 -39.25 -0.53 -7.73 16 15 C 0.46 10.42 7.70 -10.99 -0.08 10.33 16 16 O -0.60 -14.43 15.22 5.55 0.08 -14.35 16 17 C 0.12 2.36 4.76 -5.20 -0.02 2.33 16 18 N -0.71 -12.37 5.53 -61.47 -0.34 -12.71 16 19 C 0.54 9.03 7.61 -10.99 -0.08 8.94 16 20 O -0.55 -11.03 16.26 5.56 0.09 -10.94 16 21 C -0.19 -2.35 6.19 -91.77 -0.57 -2.92 16 22 C -0.15 -1.58 10.23 -26.73 -0.27 -1.85 16 23 C -0.15 -1.60 10.04 -26.73 -0.27 -1.87 16 24 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 25 H 0.12 3.03 5.32 -51.93 -0.28 2.76 16 26 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 29 H 0.40 3.59 9.10 45.56 0.41 4.00 16 30 H 0.09 1.67 7.78 -51.93 -0.40 1.26 16 31 H 0.10 2.01 8.05 -51.93 -0.42 1.59 16 32 H 0.41 6.79 7.44 -40.82 -0.30 6.49 16 33 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.32 7.67 -51.92 -0.40 0.92 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -30.90 327.81 -5.97 -36.87 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -3.80 Total: 16.16 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -1.41 Total: 16.51 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.00 Total: -44.11 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.67 Total: -44.00 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.90 -5.97 -36.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.363 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds